HaploReg v4.1

HaploReg v4.1

Broad Institute Homepage MIT

HaploReg is a tool for exploring annotations of the noncoding genome at variants on haplotype blocks, such as candidate regulatory SNPs at disease-associated loci. Using LD information from the 1000 Genomes Project, linked SNPs and small indels can be visualized along with chromatin state and protein binding annotation from the Roadmap Epigenomics and ENCODE projects, sequence conservation across mammals, the effect of SNPs on regulatory motifs, and the effect of SNPs on expression from eQTL studies. HaploReg is designed for researchers developing mechanistic hypotheses of the impact of non-coding variants on clinical phenotypes and normal variation.

Update 2015.11.05: Version 4.1 GWAS and eQTL have been updated; a simpler pruning strategy is applied when combining GWAS; and links out to other NHGRI/EBI GWAS hits and GRASP QTL hits are provided.

Update 2015.09.15: Version 4.0 now includes many recent eQTL results including the GTEx pilot, four different options for defining enhancers using Roadmap Epigenomics data, and a complete set of source files for download and local analysis. Older versions available: v3, v2, v1.

Build Query

Use one of the three methods below to enter a set of variants. If an r² threshold is specified (see the Set Options tab), results for each variant will be shown in a separate table along with other variants in LD. If r² is set to NA, only queried variants will be shown, together in one table.

Query (comma-delimited list of rsIDs OR a single region as chrN:start-end):
or, upload a text file (one refSNP ID per line):
or, select a GWAS:

Set Options

LD threshold, r² (select NA to only show query variants):
1000G Phase 1 population for LD calculation: AFR AMR ASN EUR
Source for epigenomes:
Mammalian conservation algorithm: GERP SiPhy-omega both
Show position relative to: GENCODE genes RefSeq genes both
Condense lists in table longer than:
Condense indel oligos longer than:
Output mode: HTML Text

Documentation

For details on data sources and methods along with usage examples, see the full documentation (opens in a pop-up window.)

The HaploReg database and web interface were produced by Luke Ward in the Kellis Lab at MIT. HaploReg is hosted by the Broad Institute.

To cite HaploReg, please refer to our publication in Nucleic Acids Research: HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants. (PMID:22064851).

The underlying data are available in the following directory.

Contact: luke@lukeward.net

Query SNP: rs2066847 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
165072986711rs2066847GGC0.010.010.000.014 altered motifs3 hitsNOD2frameshift


Query SNP: rs7517847 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
16721598611rs7517847TG0.200.560.450.434 altered motifs2 hits3 hitsIL23Rintronic


Query SNP: rs2066844 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
165071201511rs2066844CT0.000.030.000.05MUS, GI14 tissues13 tissuesNRSF7 altered motifs1 hitNOD2missense


Query SNP: rs11581607 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
16723423211rs79755370CA0.010.060.000.0629 tissues4 bound proteinsIL23Rintronic
16724027511rs11209026GA0.010.060.000.06GR15 hits3 hitsIL23Rmissense
16724200711rs11581607GA0.010.060.000.064 altered motifsIL23Rintronic
16724766311rs113935720TC0.010.060.000.064 altered motifsIL23Rintronic


Query SNP: rs11742570 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
54040594811rs6890268AT0.630.490.150.58BLD12 tissuesBLDEvi-11 hit86kb 3' of AC108105.1
54040602811rs6871591TA0.620.490.150.58BLD12 tissuesBLD,MUS4 altered motifs1 hit86kb 3' of AC108105.1
54041048211rs11742570TC0.630.490.150.587 tissues17 tissues28 tissuesGATA23 hits926 hits1 hit90kb 3' of AC108105.1
54041083311rs6451493GT0.630.490.150.586 tissues16 tissues19 tissues4 bound proteinsCEBPB,HNF1,Pou2f21 hit1 hit90kb 3' of AC108105.1
54041118911rs6451494TC0.630.490.150.585 tissues17 tissues19 tissues4 bound proteinsMef2,Sox1 hit91kb 3' of AC108105.1
54041180811rs6883964AG0.630.490.150.58BLD, SKIN7 tissuesSKIN,BRST12 altered motifs1 hit91kb 3' of AC108105.1
54041209311rs12655810TC0.630.490.150.58BLD5 tissues8 altered motifs1 hit92kb 3' of AC108105.1
54041236411rs6888952AG0.630.490.150.58BLD4 tissues7 altered motifs1 hit92kb 3' of AC108105.1
54041284211rs10473191TA0.630.490.150.58MUS13 altered motifs1 hit92kb 3' of AC108105.1
54041431711rs1445004CT0.630.490.150.58SKINBHLHE40,Gm3971 hit94kb 3' of AC108105.1
54041496511rs1992660CT0.630.490.150.58SKIN6 altered motifs1 hit1 hit95kb 3' of AC108105.1


Query SNP: rs6738490 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
223324849111rs11680089GC0.280.390.330.53BRST, BLD, SKIN7 altered motifs8 hitsATG16L1
223324861211rs11680130GA0.250.380.330.53BLD, SKIN8 hitsATG16L1
223324904211rs56049444CT0.170.370.330.53BLDBLD, THYM5 tissues8 hitsATG16L1
223324908711rs55835501CT0.250.390.330.53BLDBLD, THYM7 tissuesAIRE7 hitsATG16L1
223324909511rs56227616TC0.200.380.330.53BLDBLD, THYM8 tissuesRFX57 hitsATG16L1
223325019311rs10210302CT0.250.380.330.53VASHlx11 hit2 hits9 hitsATG16L1
223325169911rs2289477TG0.260.390.330.5324 tissues53 tissues33 bound proteinsAP-2,Pbx3,Znf1437 hitsATG16L15'-UTR
223325280211rs6752107GA0.260.390.330.5321 tissues7 tissues1 hit10 hitsATG16L1intronic
223325293711rs6738490TC0.260.390.330.5321 tissues7 tissuesBLDGATA18 hitsATG16L1intronic
223325312311rs6431654CT0.260.390.330.5319 tissues12 tissuesBLD,LNG,BLDGATA1Nanog1 hit10 hitsATG16L1intronic
223325350711rs6745825AG0.260.390.330.53BLD, LIV19 tissuesGI6 altered motifs8 hitsATG16L1intronic
223325503711rs6705964GC0.250.390.330.53BLD6 tissues4 altered motifs9 hitsATG16L1intronic
223325858811rs6431660AG0.170.360.330.53BLD8 altered motifs11 hitsATG16L1intronic
223325877511rs6431661CT0.210.360.330.53BLD, STRMAIRE8 hitsATG16L1intronic
223325923511rs34123137TA0.200.360.330.53BLD, STRM, GI5 altered motifs8 hitsATG16L1intronic
223326014411rs35300242GA0.200.360.330.534 tissuesBLD15 altered motifs8 hitsATG16L1intronic
223326117611rs10164737CT0.100.360.330.539 hitsATG16L1intronic


Query SNP: rs9271366 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
63261907711rs9271366GA0.830.920.840.87Nanog6 hits122 hits261 hits9.1kb 5' of HLA-DQA1


Query SNP: rs12994997 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
223326354211rs12162308CG0.250.370.330.53PLCNTWhn11 hitsATG16L1intronic
223326420011rs6708373AG0.250.380.330.53LIV11 hitsATG16L1intronic
223326426911rs10165561GC0.250.380.330.53Ets,LUN-111 hitsATG16L1intronic
223326485711rs12994997GA0.250.370.330.53ESDR, LIV1 hit1655 hits11 hitsATG16L1intronic
223326706011rs13009506GT0.200.360.330.53BLD, THYMTBX51 hit10 hitsATG16L1intronic
223326796311rs3792112CT0.250.370.330.53BLD6 tissues9 tissues6 bound proteinsIrf10 hitsATG16L1intronic
223327104411rs3792111CT0.170.360.330.53BLDBLD, LIV, GIGI4 bound proteins10 hitsATG16L1intronic
223327176411rs3828309AG0.200.360.330.53BLD, LIV, PANCGI,GIAP-4,Ets1 hit4 hits10 hitsATG16L1intronic


Query SNP: rs2076756 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
165071825311rs62029864GA0.050.150.000.22FAT, SKIN6 tissues6 tissuesGATA2GR,Irf,Nkx21 hitNOD2intronic
165072297011rs2076756AG0.050.150.000.22BLDMef2,Nanog6 hits1 hit3 hitsNOD2intronic
165072493811rs749910GA0.050.150.000.22BLDLNGHEY1,TATA1 hitNOD2intronic


Query SNP: rs11209026 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
16723423211rs79755370CA0.010.060.000.0629 tissues4 bound proteinsIL23Rintronic
16724027511rs11209026GA0.010.060.000.06GR15 hits3 hitsIL23Rmissense
16724200711rs11581607GA0.010.060.000.064 altered motifsIL23Rintronic
16724766311rs113935720TC0.010.060.000.064 altered motifsIL23Rintronic


Query SNP: rs11465804 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
16723684311rs11465804TG0.030.060.000.066 altered motifs4 hits2 hits1 hitIL23Rintronic
16724247211rs80174646GT0.030.070.000.06Evi-1,GATA,Pou3f1IL23Rintronic
16724370111rs11488194AG0.270.090.000.06CEBPB,Foxm1,Hoxa7IL23Rintronic
16724454811rs148170789AG0.160.080.000.064 altered motifsIL23Rintronic
16724474211rs140953244GA0.270.090.000.06GATA,Lmo2-complex,SREBPIL23Rintronic
16724630311rs7551201CT0.270.090.000.06AP-1,Pax-5IL23Rintronic
16724647411rs6701313CT0.030.070.000.06IL23Rintronic
16725126811rs112106127CT0.160.080.000.06IL23Rintronic
16725723611rs41494046CG0.280.090.000.0612 tissuesSKINIL23Rintronic


Query SNP: rs6752107 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
223324849111rs11680089GC0.280.390.330.53BRST, BLD, SKIN7 altered motifs8 hitsATG16L1
223324861211rs11680130GA0.250.380.330.53BLD, SKIN8 hitsATG16L1
223324904211rs56049444CT0.170.370.330.53BLDBLD, THYM5 tissues8 hitsATG16L1
223324908711rs55835501CT0.250.390.330.53BLDBLD, THYM7 tissuesAIRE7 hitsATG16L1
223324909511rs56227616TC0.200.380.330.53BLDBLD, THYM8 tissuesRFX57 hitsATG16L1
223325019311rs10210302CT0.250.380.330.53VASHlx11 hit2 hits9 hitsATG16L1
223325169911rs2289477TG0.260.390.330.5324 tissues53 tissues33 bound proteinsAP-2,Pbx3,Znf1437 hitsATG16L15'-UTR
223325280211rs6752107GA0.260.390.330.5321 tissues7 tissues1 hit10 hitsATG16L1intronic
223325293711rs6738490TC0.260.390.330.5321 tissues7 tissuesBLDGATA18 hitsATG16L1intronic
223325312311rs6431654CT0.260.390.330.5319 tissues12 tissuesBLD,LNG,BLDGATA1Nanog1 hit10 hitsATG16L1intronic
223325350711rs6745825AG0.260.390.330.53BLD, LIV19 tissuesGI6 altered motifs8 hitsATG16L1intronic
223325503711rs6705964GC0.250.390.330.53BLD6 tissues4 altered motifs9 hitsATG16L1intronic
223325858811rs6431660AG0.170.360.330.53BLD8 altered motifs11 hitsATG16L1intronic
223325877511rs6431661CT0.210.360.330.53BLD, STRMAIRE8 hitsATG16L1intronic
223325923511rs34123137TA0.200.360.330.53BLD, STRM, GI5 altered motifs8 hitsATG16L1intronic
223326014411rs35300242GA0.200.360.330.534 tissuesBLD15 altered motifs8 hitsATG16L1intronic
223326117611rs10164737CT0.100.360.330.539 hitsATG16L1intronic


Query SNP: rs7765379 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
63271315111rs7765379TG0.090.140.090.14BLDAP-13 hits20 hits4.9kb 5' of XXbac-BPG254F23.7


Query SNP: rs17622378 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
513244276011rs17622378AG0.050.280.000.387 tissues4 altered motifs45 hitsC5orf56intronic


Query SNP: rs11742570 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
54040594811rs6890268AT0.630.490.150.58BLD12 tissuesBLDEvi-11 hit86kb 3' of AC108105.1
54040602811rs6871591TA0.620.490.150.58BLD12 tissuesBLD,MUS4 altered motifs1 hit86kb 3' of AC108105.1
54041048211rs11742570TC0.630.490.150.587 tissues17 tissues28 tissuesGATA23 hits926 hits1 hit90kb 3' of AC108105.1
54041083311rs6451493GT0.630.490.150.586 tissues16 tissues19 tissues4 bound proteinsCEBPB,HNF1,Pou2f21 hit1 hit90kb 3' of AC108105.1
54041118911rs6451494TC0.630.490.150.585 tissues17 tissues19 tissues4 bound proteinsMef2,Sox1 hit91kb 3' of AC108105.1
54041180811rs6883964AG0.630.490.150.58BLD, SKIN7 tissuesSKIN,BRST12 altered motifs1 hit91kb 3' of AC108105.1
54041209311rs12655810TC0.630.490.150.58BLD5 tissues8 altered motifs1 hit92kb 3' of AC108105.1
54041236411rs6888952AG0.630.490.150.58BLD4 tissues7 altered motifs1 hit92kb 3' of AC108105.1
54041284211rs10473191TA0.630.490.150.58MUS13 altered motifs1 hit92kb 3' of AC108105.1
54041431711rs1445004CT0.630.490.150.58SKINBHLHE40,Gm3971 hit94kb 3' of AC108105.1
54041496511rs1992660CT0.630.490.150.58SKIN6 altered motifs1 hit1 hit95kb 3' of AC108105.1


Query SNP: rs6596 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
165067581211rs6596GA0.030.120.000.164 tissuesLNG,PLCNT,BLDCMYC4 altered motifs1 hit3 hitsSNX20synonymous


Query SNP: rs10761659 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
106268580411rs10761659AG0.100.560.770.52DMRT54 hits419 hits1 hit14kb 3' of ZNF365


Query SNP: rs4409764 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
109952448011rs4409764TG0.400.570.530.52GI6 tissues6 tissuesMrg,Sox,Tgif12 hits136 hits8 hits1.9kb 3' of RP11-129J12.2
109952458811rs4129134CG0.440.570.530.52GI6 tissues4 tissues8 altered motifs8 hits1.8kb 3' of RP11-129J12.2
109952481311rs4129133TC0.400.570.530.526 tissuesESC8 hits1.5kb 3' of RP11-129J12.2


Query SNP: rs6478106 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
911478338611rs6478106CT0.440.410.360.29BLD4 altered motifs1 hit1 hit2 hits5.9kb 3' of TNFSF15


Query SNP: rs2155219 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
117658815011rs2155219GT0.540.480.520.486 tissues4 tissues5 altered motifs7 hits350 hits35kb 3' of C11orf30


Query SNP: rs6596 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
165067581211rs6596GA0.030.120.000.164 tissuesLNG,PLCNT,BLDCMYC4 altered motifs1 hit3 hitsSNX20synonymous


Query SNP: rs11741861 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
515089834711rs11741861AG0.060.120.410.09NF-I1 hit142 hits44 hitsIRGMintronic


Query SNP: rs10781499 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
913637195311rs10781499GA0.290.470.300.41GR2 hits186 hits31 hitsCARD9synonymous


Query SNP: rs56167332 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
515940076111rs56167332CA0.200.300.350.354 altered motifs1 hit38kb 3' of AC008697.1


Query SNP: rs3792109 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
223327577111rs3792109GA0.200.360.330.545 altered motifs2 hits1 hit9 hitsSCARNA5intronic


Query SNP: rs2076756 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
165071825311rs62029864GA0.050.150.000.22FAT, SKIN6 tissues6 tissuesGATA2GR,Irf,Nkx21 hitNOD2intronic
165072297011rs2076756AG0.050.150.000.22BLDMef2,Nanog6 hits1 hit3 hitsNOD2intronic
165072493811rs749910GA0.050.150.000.22BLDLNGHEY1,TATA1 hitNOD2intronic


Query SNP: rs4077515 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
913637204411rs4077515CT0.290.470.310.4111 tissuesIPSC,IPSC,BRST5 hits23 hits29 hitsCARD9missense


Query SNP: rs71485777 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
109952357011rs71485777TCCCTGCA10 tissues16 tissues11 tissuesCOMP1,Maf2.8kb 3' of RP11-129J12.2


Query SNP: rs2188962 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
513243511311rs2188962CT0.050.290.000.38LIV16 tissues6 tissuesHNF4A,HNF4G6 altered motifs3 hits324 hits45 hitsC5orf56intronic


Query SNP: rs11742570 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
54040594811rs6890268AT0.630.490.150.58BLD12 tissuesBLDEvi-11 hit86kb 3' of AC108105.1
54040602811rs6871591TA0.620.490.150.58BLD12 tissuesBLD,MUS4 altered motifs1 hit86kb 3' of AC108105.1
54041048211rs11742570TC0.630.490.150.587 tissues17 tissues28 tissuesGATA23 hits926 hits1 hit90kb 3' of AC108105.1
54041083311rs6451493GT0.630.490.150.586 tissues16 tissues19 tissues4 bound proteinsCEBPB,HNF1,Pou2f21 hit1 hit90kb 3' of AC108105.1
54041118911rs6451494TC0.630.490.150.585 tissues17 tissues19 tissues4 bound proteinsMef2,Sox1 hit91kb 3' of AC108105.1
54041180811rs6883964AG0.630.490.150.58BLD, SKIN7 tissuesSKIN,BRST12 altered motifs1 hit91kb 3' of AC108105.1
54041209311rs12655810TC0.630.490.150.58BLD5 tissues8 altered motifs1 hit92kb 3' of AC108105.1
54041236411rs6888952AG0.630.490.150.58BLD4 tissues7 altered motifs1 hit92kb 3' of AC108105.1
54041284211rs10473191TA0.630.490.150.58MUS13 altered motifs1 hit92kb 3' of AC108105.1
54041431711rs1445004CT0.630.490.150.58SKINBHLHE40,Gm3971 hit94kb 3' of AC108105.1
54041496511rs1992660CT0.630.490.150.58SKIN6 altered motifs1 hit1 hit95kb 3' of AC108105.1


Query SNP: rs75900472 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
9496795011rs7850675AC0.230.040.060.005 tissuesEomes,TBX5146bp 5' of AL158147.1
9496801911rs10974895TC0.100.040.060.00IPSC,HRT5 altered motifs77bp 5' of AL158147.1
9496833111rs10974896TC0.110.040.060.0019 altered motifs145bp 3' of AL158147.1
9496873511rs16922486TC0.100.020.060.00MUSDMRT1,DMRT4549bp 3' of AL158147.1
9497415311rs61473187GA0.120.030.010.004 tissues5 tissuesCEBPBFoxj2,Mef26kb 3' of AL158147.1
9497532611rs144050958GA0.120.030.010.00Sp47.1kb 3' of AL158147.1
9498080911rs189151190CT0.000.000.000.00BLDSKINAP-14.2kb 5' of JAK2
9498160011rs75900472ACA0.120.020.010.00BLDMUSIk-2,LUN-1,NF-AT3.4kb 5' of JAK2


Query SNP: rs2413583 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
223926376811rs2413583CT0.320.140.040.16BLD, LIVDobox4,SREBP,Zfp4102 hits70 hits1 hit2.7kb 5' of AL031590.1


Query SNP: rs3197999 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
34968409911rs3197999GA0.240.220.060.315 tissuesOVRYSMC3,TCF12,ZBRK16 hits467 hits59 hitsMST1missense


Query SNP: rs3828309 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
223326354211rs12162308CG0.250.370.330.53PLCNTWhn11 hitsATG16L1intronic
223326420011rs6708373AG0.250.380.330.53LIV11 hitsATG16L1intronic
223326426911rs10165561GC0.250.380.330.53Ets,LUN-111 hitsATG16L1intronic
223326485711rs12994997GA0.250.370.330.53ESDR, LIV1 hit1655 hits11 hitsATG16L1intronic
223326706011rs13009506GT0.200.360.330.53BLD, THYMTBX51 hit10 hitsATG16L1intronic
223326796311rs3792112CT0.250.370.330.53BLD6 tissues9 tissues6 bound proteinsIrf10 hitsATG16L1intronic
223327104411rs3792111CT0.170.360.330.53BLDBLD, LIV, GIGI4 bound proteins10 hitsATG16L1intronic
223327176411rs3828309AG0.200.360.330.53BLD, LIV, PANCGI,GIAP-4,Ets1 hit4 hits10 hitsATG16L1intronic


Query SNP: rs116392568 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
11rs11639256816 hits


Query SNP: rs11743851 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
513127790711rs11743851TC0.020.270.000.32BLD7 tissuesBLDSIX5,Znf1435 hitsCDC42SE2intronic


Query SNP: rs1250550 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
107930056011rs1250550CA0.090.270.480.3010 tissuesMUS,BRN3 hits2 hitsZMIZ1intronic


Query SNP: rs10781499 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
913637195311rs10781499GA0.290.470.300.41GR2 hits186 hits31 hitsCARD9synonymous


Query SNP: rs10761659 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
106268580411rs10761659AG0.100.560.770.52DMRT54 hits419 hits1 hit14kb 3' of ZNF365


Query SNP: rs9264942 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
63130660311rs9264942TC0.300.340.380.365 altered motifs4 hits469 hits67 hits5kb 5' of XXbac-BPG248L24.13


Query SNP: rs11236797 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
117658860511rs11236797CA0.190.410.420.44BLD14 tissues29 tissues4 bound proteinsGATA36kb 3' of C11orf30


Query SNP: rs56167332 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
515940076111rs56167332CA0.200.300.350.354 altered motifs1 hit38kb 3' of AC008697.1


Query SNP: rs7554511 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
120090510111rs35730213GC0.150.190.000.267 tissuesDobox48 hitsC1orf106intronic
120090596711rs12132298TC0.150.190.000.266 tissues18 tissues5 bound proteinsHNF1,TCF48 hitsC1orf106intronic
120090676911rs59655222TC0.150.190.000.265 tissuesESDR,PLCNT8 hitsC1orf106intronic
120090843411rs7554511CA0.150.190.000.26GI10 tissuesGI,GIFOXA1GATA,Maf5 hits574 hits8 hitsC1orf106intronic
120090872211rs41299637TG0.150.190.000.26GI6 tissuesLNG,PLCNTCMYC,GATA3,P3008 hitsC1orf106intronic
120090959911rs12131796GA0.150.190.000.26STRM, GI, LNGBLD4 altered motifs8 hitsC1orf106intronic


Query SNP: rs4613763 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
54036035611rs11743463CA0.220.080.010.13BLD, SKINHP1-site-factor,NF-I,Pax-440kb 3' of AC108105.1
54036287211rs73082864AG0.220.080.010.13Nkx3,Pax-8,TATA42kb 3' of AC108105.1
54037505411rs146646093AAAAC0.220.080.010.13VASGR55kb 3' of AC108105.1
54037605711rs56244034AT0.220.080.010.13BLDNkx6-156kb 3' of AC108105.1
54037776411rs17227583TC0.220.080.010.13BLD, THYMTAL1,TATA57kb 3' of AC108105.1
54038395911rs895123CG0.220.080.010.13BLD15 tissues22 tissuesCJUN,P300,STAT3Mxi1,Myc64kb 3' of AC108105.1
54038918511rs1124233GA0.240.080.010.13BLD, THYM, GI4 altered motifs69kb 3' of AC108105.1
54039212411rs2371685AT0.220.080.010.13BLD, GIBbx,Bcl6b,Sox72kb 3' of AC108105.1
54039262611rs4613763TC0.220.080.010.13BLD, GIBAF155,SIX5,Znf1432 hits1 hit72kb 3' of AC108105.1
54039409911rs10512735GT0.220.080.010.13Nrf174kb 3' of AC108105.1
54039632311rs11749040GA0.230.080.010.13MUS, GIFoxk176kb 3' of AC108105.1
54039991811rs11738106TA0.220.080.010.136 tissues80kb 3' of AC108105.1
54040140711rs17234657TG0.220.080.010.1314 tissues15 tissuesMyc1 hit1 hit81kb 3' of AC108105.1
54040213111rs6879283TC0.220.080.010.1312 tissues20 tissues13 bound proteinsNkx282kb 3' of AC108105.1
54040309111rs1373694GA0.220.080.010.13BLD5 altered motifs83kb 3' of AC108105.1
54040688311rs6896243CT0.220.080.010.13BLD, LIV9 tissues11 tissuesPax-486kb 3' of AC108105.1


Query SNP: rs11010067 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
103500650311rs11010067CG0.450.370.320.378 tissuesGATA,Irf1 hit2262 hits11 hits2kb 3' of CUL2


Query SNP: rs2413583 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
223926376811rs2413583CT0.320.140.040.16BLD, LIVDobox4,SREBP,Zfp4102 hits70 hits1 hit2.7kb 5' of AL031590.1


Query SNP: rs224090 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
106278155911rs224090TC0.650.550.440.59Mef21 hit6 hits12kb 3' of RP11-436D10.3
106278164411rs224092AG0.650.550.440.59AIRE,Hand1,Pax-61 hit6 hits12kb 3' of RP11-436D10.3
106279031111rs224109GC0.650.550.440.59BRNMUSLNG6 altered motifs6 hits3.3kb 3' of RP11-436D10.3


Query SNP: rs2823286 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
211544561911rs2823286GA0.230.280.140.28BLD, LNG6 tissues13 tissuesBATF,PU1,USF1Mef2,p3001 hit287 hits1 hit43kb 5' of AJ006998.2


Query SNP: rs6596 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
165067581211rs6596GA0.030.120.000.164 tissuesLNG,PLCNT,BLDCMYC4 altered motifs1 hit3 hitsSNX20synonymous


Query SNP: rs12422544 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
124006382211rs12424040CA0.010.170.020.026 tissuesMUS,OVRY13 altered motifsSLC2A13intronic
124006532511rs12426378TA0.010.170.020.02GATA,Pitx2SLC2A13intronic
124006852711rs28365689TC0.010.170.020.02CEBPA,Pou2f2,Rad211 hitSLC2A13intronic
124007332411rs28365169AC0.010.170.020.02CIZ,HDAC2,Sin3Ak-201 hitSLC2A13intronic
124007780011rs202148073ATTTGA0.010.170.020.02SKIN6 altered motifs1 hitSLC2A13intronic
124008058111rs141025863GC0.010.170.020.02ATF3,Spz1,ZBTB33SLC2A13intronic
124008084011rs77205332GC0.010.170.020.02Irf,TAL1SLC2A13intronic
124008622511rs11564216GT0.010.170.020.02IPSCSLC2A13intronic
124008768111rs28365173CT0.010.170.020.02STRMESDRHltf,SRFSLC2A13intronic
124009057911rs138638118TAATAT0.010.170.020.02PANC15 altered motifsSLC2A13intronic
124009666311rs10506144AC0.010.170.020.02MybSLC2A13intronic
124009684811rs117880631GA0.010.170.020.02ESDRBcl6bSLC2A13intronic
124010150011rs11175186CG0.010.170.020.026 tissuesCRVXSLC2A13intronic
124010639311rs78917199CA0.010.170.020.0223 tissues4 tissues31 tissuesZNF263Nkx3303bp 5' of SLC2A13
124010732011rs4768213GA0.010.170.020.0220 tissues9 tissues12 tissues4 altered motifs1.2kb 5' of SLC2A13
124011166511rs729215TA0.010.170.030.02Maf,Pou2f25.6kb 5' of SLC2A13
124011401911rs17458549AG0.010.170.020.0210 altered motifs7.9kb 5' of SLC2A13
124011453811rs201580148GGA0.010.170.020.02SKINPANCHP1-site-factor,Mef28.4kb 5' of SLC2A13
124011942911rs117563959AG0.010.170.020.02CEBPB,SIX513kb 5' of SLC2A13
124012977111rs35316273AG0.010.170.020.02NF-I,Pou2f211kb 3' of RP11-476D10.1
124013463011rs12422544TC0.010.170.020.027 altered motifs6.3kb 3' of RP11-476D10.1
124013714411rs142516728AG0.010.170.020.02BLD, SKINMef21 hit3.8kb 3' of RP11-476D10.1
124014871311rs118148378CG0.010.170.020.02GI,CRVX9 altered motifs1 hit5.8kb 5' of RP11-476D10.1
124014896111rs78214347AG0.010.170.020.025 altered motifs1 hit6.1kb 5' of RP11-476D10.1
124014974311rs17458808TA0.010.170.020.02SKIN, FATHic16.5kb 5' of AC079630.2
124019371911rs17484003TC0.010.160.020.02BLDAscl2,LBP-1AC079630.4


Query SNP: rs3024505 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
120676655911rs3024505GA0.040.100.020.17BLD, BONE15 tissues34 tissues22 bound proteinsMZF1::1-4,Pax-47 hits257 hits1kb 3' of IL10
120676906811rs3024495CT0.020.100.020.17BLD, GI11 tissuesBLD,SKINIL10intronic


Query SNP: rs6478109 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
911480648611rs6478109AG0.890.740.530.698 tissues22 tissues23 tissuesEBF1,NFKB,TCF12Hoxa71 hit1 hit2 hits359bp 5' of TNFSF15


Query SNP: rs6561151 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
134391057011rs6561151GA0.360.350.300.244 tissuesSKIN7 altered motifs16 hits17kb 3' of LACC1
134391094011rs9316058GC0.360.350.300.244 tissuesEvi-1,Osf2,PEBP16 hits17kb 3' of LACC1
134391265311rs9316059AT0.350.330.300.24ESDR, HRT, PANCGfi1,Zfp69116 hits19kb 3' of LACC1
134391604511rs61960013CG0.350.350.300.24STRMHEN1,YY118 hits22kb 3' of LACC1


Query SNP: rs9264942 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
63130660311rs9264942TC0.300.340.380.365 altered motifs4 hits469 hits67 hits5kb 5' of XXbac-BPG248L24.13


Query SNP: rs1893217 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
181280814111rs8096138CG0.040.070.160.16GR,Osr,TATA10 hitsPTPN2intronic
181280846711rs35153695ACA0.040.070.160.1617 altered motifs10 hitsPTPN2intronic
181280934111rs1893217AG0.050.070.160.16ESCRXR::LXR,RXRA5 hits1095 hits10 hitsPTPN2intronic


Query SNP: rs2024092 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
19112365311rs4807570GA0.310.330.130.20ESDR10 tissues4 tissues6 altered motifs3 hitsSBNO2intronic
19112403211rs2024092GA0.320.330.130.2010 tissues5 tissues5 altered motifs1 hit452 hits4 hitsSBNO2intronic


Query SNP: rs3091315 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
173426664611rs3091315AG0.410.470.620.32FAT, BLD5 altered motifs1 hit363 hits3.6kb 5' of CCL7
173426695511rs3091316GA0.260.460.620.32BLDGmeb1,Mef2,Pou2f22 hits3.3kb 5' of CCL7


Query SNP: rs2823286 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
211544561911rs2823286GA0.230.280.140.28BLD, LNG6 tissues13 tissuesBATF,PU1,USF1Mef2,p3001 hit287 hits1 hit43kb 5' of AJ006998.2


Query SNP: rs12946510 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
173975612411rs12946510CT0.170.360.350.474 tissues11 tissues13 tissues13 bound proteins7 altered motifs1 hit238 hits33 hits1.6kb 3' of RP11-94L15.2


Query SNP: rs4409764 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
109952448011rs4409764TG0.400.570.530.52GI6 tissues6 tissuesMrg,Sox,Tgif12 hits136 hits8 hits1.9kb 3' of RP11-129J12.2
109952458811rs4129134CG0.440.570.530.52GI6 tissues4 tissues8 altered motifs8 hits1.8kb 3' of RP11-129J12.2
109952481311rs4129133TC0.400.570.530.526 tissuesESC8 hits1.5kb 3' of RP11-129J12.2


Query SNP: rs2066847 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
165072986711rs2066847GGC0.010.010.000.014 altered motifs3 hitsNOD2frameshift


Query SNP: rs3197999 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
34968409911rs3197999GA0.240.220.060.315 tissuesOVRYSMC3,TCF12,ZBRK16 hits467 hits59 hitsMST1missense


Query SNP: rs7608910 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
26097750611rs7608697AC0.680.320.050.37BLDBLD, SKINSKINBCL11A,IRF45 altered motifs17 hitsPUS10intronic
26097755311rs7596362TC0.910.330.050.37BLDBLD, SKINSKINIRF44 altered motifs17 hitsPUS10intronic
26097772111rs7608910AG0.430.300.050.37BLDLNG, BLDSKIN2 hits405 hits15 hitsPUS10intronic
26097778211rs4560096TG0.430.300.050.37BLDLNG, BLDAP-4,Sin3Ak-2013 hitsPUS10intronic


Query SNP: rs7746082 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
610598715011rs6568421AG0.170.190.000.296 tissues5 tissuesNkx22 hits82kb 3' of 7SK
610598739411rs7746082GC0.010.180.000.295 tissuesMUS,MUS,SKINCphx,HNF41 hit272 hits83kb 3' of 7SK


Query SNP: rs7282490 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
214419585811rs7282490GA0.790.430.420.60BLD7 tissuesBLD1 hit221 hits4 hits5.4kb 5' of AP001057.1


Query SNP: rs4246905 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
911479096911rs4246905TC0.950.780.650.72ESDR, BRST, MUSESDR,MUS2 hits491 hits1 hitTNFSF15intronic


Query SNP: rs114985235 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
63130191611rs114985235TC0.050.070.160.04LBP-9273bp 5' of XXbac-BPG248L24.13
63130191711rs116589426TA0.050.070.160.04Msx-1274bp 5' of XXbac-BPG248L24.13
63130192011rs114151681GA0.050.080.160.04AP-3,PU.1277bp 5' of XXbac-BPG248L24.13
63130192411rs9380241CT0.050.080.160.04PU.1281bp 5' of XXbac-BPG248L24.13


Query SNP: rs26528 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
162850638811rs26528TC0.350.500.360.41BLD7 tissuesPLCNT,BLDPPAR,RXRA,Zfp6911 hit383 hits141 hitsIL27intronic
162850777511rs153109TC0.350.500.360.41BLD7 tissuesBLD,MUS,BLDVDR141 hitsIL27


Query SNP: rs9271060 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
63260773611rs9271060CG0.770.770.780.73BLDESC, BLD, FATBLD,BLD6 bound proteinsEvi-1257 hits18kb 5' of HLA-DRB1


Query SNP: rs6425143 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
117287521211rs6425143TG0.380.520.880.246 tissues7 tissuesNFKB1 hit1 hitRP1-15D23.2


Query SNP: rs10761659 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
106268580411rs10761659AG0.100.560.770.52DMRT54 hits419 hits1 hit14kb 3' of ZNF365


Query SNP: rs13333062 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
165088664811rs8053407GA0.190.110.080.1411 altered motifsRP11-883G14.1
165088767211rs59140851CA0.170.110.080.14BLDIPSC,BLDBHLHE40RP11-883G14.1
165088790311rs16949029GC0.170.110.080.14Nkx2RP11-883G14.1
165088820911rs1874494AG0.170.110.060.14NRSFNRSF,RXRA1 hitRP11-883G14.1
165088887511rs13333062GA0.180.110.060.14TBX51 hitRP11-883G14.1


Query SNP: rs780094 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
22751837011rs780094TC0.870.600.440.59LIV, BLDLIVFOXA2,MAFK,RXRA9 altered motifs21 hits100 hits29 hitsGCKRintronic


Query SNP: rs9286879 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
117288519411rs4916283GA0.230.490.920.248 tissues34 altered motifs1 hitRP1-15D23.2
117288643611rs68143871AG0.300.490.920.2411 tissues6 altered motifs1 hitRP1-15D23.2
117288956711rs10912490CT0.290.490.920.245 altered motifs1 hitRP1-15D23.2
117289089511rs12739009AC0.310.500.920.24FAC11 hitRP1-15D23.2
117289243411rs2213742CT0.300.490.920.241 hitRP1-15D23.2
117289261911rs2213745AG0.300.490.920.24VAS5 altered motifs1 hitRP1-15D23.2
117289309411rs9286879AG0.320.500.920.24CRVX10 tissues2 hits2 hits1 hitRP1-15D23.2
117289324011rs7527462CG0.290.490.920.24CRVX10 tissuesPLCNT,PANCAIRE1 hitRP1-15D23.2
117289379911rs10489276CT0.300.490.920.24CRVX,VAS1 hit1 hitRP1-15D23.2
117289480811rs2157453GA0.300.490.920.24BLD, SKIN12 tissuesBLD,CRVXGATA11 hit1 hit1 hitRP1-15D23.2
117289485211rs2157454GA0.300.490.920.24BLD, SKIN12 tissuesCRVXGATA15 altered motifs1 hitRP1-15D23.2
117289504311rs2187892GA0.300.490.920.245 tissues11 tissuesBLD,CRVXE2F,LBP-1,RXRA1 hitRP1-15D23.2


Query SNP: rs2024092 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
19112365311rs4807570GA0.310.330.130.20ESDR10 tissues4 tissues6 altered motifs3 hitsSBNO2intronic
19112403211rs2024092GA0.320.330.130.2010 tissues5 tissues5 altered motifs1 hit452 hits4 hitsSBNO2intronic


Query SNP: rs13407913 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
22487382311rs11892869AT0.850.390.450.41CRVX13 tissues6 tissues5 bound proteinsTCF12,Znf14335 hitsADCY3intronic
22487420311rs7580081GC0.870.390.450.41CRVX14 tissues9 tissues5 bound proteins8 altered motifs35 hitsADCY3intronic
22487477511rs13407913AG0.850.390.450.4111 tissues6 altered motifs287 hits36 hitsADCY3intronic
22487507011rs13410999TC0.840.390.450.4110 tissuesGR,HDAC2,Pax-81 hit35 hitsADCY3intronic
22487516411rs139058744GGCTCA0.850.390.450.419 tissuesHsf20 hitsADCY3intronic
22487648811rs6545776AC0.820.380.450.41PLCNT7 altered motifs36 hitsADCY3intronic


Query SNP: rs2076756 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
165071825311rs62029864GA0.050.150.000.22FAT, SKIN6 tissues6 tissuesGATA2GR,Irf,Nkx21 hitNOD2intronic
165072297011rs2076756AG0.050.150.000.22BLDMef2,Nanog6 hits1 hit3 hitsNOD2intronic
165072493811rs749910GA0.050.150.000.22BLDLNGHEY1,TATA1 hitNOD2intronic


Query SNP: rs921720 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
812552242911rs921720AG0.130.530.410.638 tissues6 tissues2 hits260 hitsRP11-136O12.2
812552389511rs10956252CG0.130.530.410.63HRTRP11-136O12.2
812552493711rs55867617CG0.130.530.410.6310 tissuesCRVXCEBPB,JUND6 altered motifsRP11-136O12.2
812552532811rs4871611GA0.130.530.360.63CRVX11 tissues11 tissues4 bound proteinsGR1 hitRP11-136O12.2


Query SNP: rs3764147 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
134388378911rs3764147AG0.330.370.320.24FAT6 tissues5 altered motifs4 hits321 hits17 hitsLACC1missense
134388610611rs1932990CT0.330.370.320.249 altered motifs17 hitsLACC1intronic


Query SNP: rs7517810 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
117288432011rs7517810CT0.230.490.890.249 tissuesMUS1 hit146 hits1 hitRP1-15D23.2


Query SNP: rs11209026 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
16723423211rs79755370CA0.010.060.000.0629 tissues4 bound proteinsIL23Rintronic
16724027511rs11209026GA0.010.060.000.06GR15 hits3 hitsIL23Rmissense
16724200711rs11581607GA0.010.060.000.064 altered motifsIL23Rintronic
16724766311rs113935720TC0.010.060.000.064 altered motifsIL23Rintronic


Query SNP: rs4768236 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
124036267011rs4768236CA0.470.560.440.69KAP1,ZBRK11 hitLRRK2intronic


Query SNP: rs11564258 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
124036696211rs3789329TC0.010.170.040.02HNF1,Irx,TATA1 hitLRRK2intronic
124036921111rs12422278TA0.010.170.040.025 altered motifs1 hitLRRK23'-UTR
124037510311rs12422527TC0.010.170.040.02CTCFGR1 hit5.8kb 3' of LRRK2
124037511911rs139236560CATC0.010.170.040.02CTCF9 altered motifs1 hit5.8kb 3' of LRRK2
124037666911rs17497325TC0.010.170.040.02Osr1 hit7.4kb 3' of LRRK2
124037894911rs17466738CT0.010.170.040.02BRN,BRN,GIAIRE1 hit9.7kb 3' of LRRK2
124037913811rs117366914CA0.010.170.040.02BRNPPAR,RXRA1 hit9.9kb 3' of LRRK2
124038132511rs117780447GC0.010.170.040.024 altered motifs1 hit12kb 3' of LRRK2
124038385611rs12424494GA0.010.170.040.02CDP,Maf,TATA1 hit9.5kb 5' of MUC19
124038432311rs150236143GT0.020.170.040.02HDAC2,Sox,TLX1::NFIC1 hit9.1kb 5' of MUC19
124039061611rs17466893GA0.010.160.030.02LIVSTAT1 hit2.8kb 5' of MUC19
124039077211rs17466907AG0.010.150.030.02LIVPdx11 hit2.6kb 5' of MUC19
124039302611rs17466969AT0.010.150.030.026 altered motifs1 hit368bp 5' of MUC19
124039346211rs148698440AG0.010.150.030.021 hitMUC19synonymous
124039479611rs73094961CT0.030.160.030.02MUC19intronic
124039484511rs141037287GC0.010.150.030.02ATF31 hitMUC19intronic
124039538811rs117222477AG0.010.150.030.024 altered motifs1 hitMUC19intronic
124039541411rs117144345GT0.010.150.030.02CIZ,HDAC2,Irf1 hitMUC19intronic
124039560611rs144214850TGT0.010.150.030.029 altered motifs1 hitMUC19intronic
124039565411rs141893556AG0.010.150.030.0229 altered motifs1 hitMUC19intronic
124039585611rs117887879AG0.010.150.030.0210 altered motifs1 hitRP11-115F18.1intronic
124039616011rs1365762CT0.010.150.030.02HNF1,Pou2f2,Pou5f11 hitRP11-115F18.1intronic
124039672811rs11564264CT0.010.150.030.02HDAC2,Sox1 hitRP11-115F18.1intronic
124039712211rs11564262CT0.010.150.030.02DMRT4,Gfi11 hitRP11-115F18.1intronic
124039760511rs117929583GA0.010.150.030.0210 altered motifs1 hitRP11-115F18.1intronic
124039805011rs145665119TC0.010.150.030.027 altered motifs1 hitRP11-115F18.1intronic
124039812811rs3909731CT0.010.150.030.021 hitRP11-115F18.1intronic
124039839511rs11564259GC0.010.150.030.02Maf,TEF-11 hitRP11-115F18.1intronic
124039849811rs11564258GA0.010.150.030.02AP-4,Hbp12 hits1 hitRP11-115F18.1intronic
124039890111rs971615CT0.010.150.030.02Gfi1,SZF1-11 hitRP11-115F18.1intronic
124039905411rs971616TG0.010.150.030.021 hitRP11-115F18.1intronic
124039917511rs971617GT0.010.150.030.02HMG-IY,HNF4,Irf1 hitRP11-115F18.1intronic
124039965811rs77719105GA0.010.150.030.029 altered motifs1 hitRP11-115F18.1intronic
124039971311rs78300565GA0.010.150.030.02Maf1 hitRP11-115F18.1intronic
124039977311rs199703399GGTTT0.010.150.030.027 altered motifs1 hitRP11-115F18.1intronic
124040009711rs2017917TC0.010.150.030.02Foxq1,Mef21 hitRP11-115F18.1intronic
124040049111rs3899331CT0.010.150.030.026 altered motifs1 hitRP11-115F18.1intronic
124040065011rs3899332TC0.010.150.030.021 hitRP11-115F18.1intronic
124040121911rs17444626TC0.010.150.030.021 hitRP11-115F18.1intronic
124040248411rs4768248AG0.010.150.030.02Myc1 hitRP11-115F18.1intronic
124040253211rs4768249TC0.010.150.030.02GATA1 hitRP11-115F18.1intronic
124040256311rs4768251TC0.010.150.030.026 altered motifs1 hitRP11-115F18.1intronic
124040323611rs17467039TC0.010.150.030.02GR1 hitRP11-115F18.1intronic
124040340311rs17444646AG0.010.150.030.02EWSR1-FLI11 hitRP11-115F18.1intronic
124040358411rs144873199AG0.010.150.030.02Zbtb31 hitRP11-115F18.1intronic
124040370911rs146687709TA0.010.150.030.02Pdx11 hitRP11-115F18.1intronic
124040378011rs117725664TG0.010.150.030.021 hitRP11-115F18.1intronic
124040406011rs117033661GT0.010.150.030.02ZID1 hitRP11-115F18.1intronic
124040439411rs149344784TC0.010.140.030.02ERalpha-a,Nr2f21 hitRP11-115F18.1intronic
124040442011rs186316711CG0.000.140.030.02Pou2f2,TAL1,ZNF2191 hitRP11-115F18.1intronic
124040446411rs147045449TC0.010.150.030.02CACD1 hitRP11-115F18.1intronic
124040446911rs138361990GA0.010.150.030.021 hitRP11-115F18.1intronic
124040461111rs11564256CT0.010.150.030.021 hitRP11-115F18.1intronic
124040474011rs143926317TA0.010.150.030.025 altered motifs1 hitRP11-115F18.1intronic
124040547511rs17444667CA0.010.150.030.02ESDR, ESC, IPSCIPSC1 hitRP11-115F18.1intronic
124040613111rs201098338C10-mer0.000.140.030.02BRSTBRST,BRSTZnf1431 hitRP11-115F18.1synonymous
124040749411rs117591458AG0.010.150.030.025 altered motifs1 hitRP11-115F18.1intronic
124040772811rs12426903CT0.010.150.030.02BCL,NF-kappaB1 hitRP11-115F18.1intronic
124040932711rs12422390CT0.010.150.030.027 altered motifs1 hitRP11-115F18.1intronic
124040939211rs12423986TC0.010.150.030.02Hoxd101 hitRP11-115F18.1intronic
124041016311rs17444681TC0.010.150.030.02PLZF1 hitRP11-115F18.1intronic
124041029111rs17444688TC0.010.150.030.024 altered motifs1 hitRP11-115F18.1intronic
124041069311rs146427470TG0.010.150.030.02Gfi1,Pax-5,RREB-11 hitRP11-115F18.1intronic
124041073111rs17467081CT0.010.150.030.02MUS1 hitRP11-115F18.1intronic
124041134511rs11564255AG0.010.150.030.02AP-31 hitRP11-115F18.1intronic
124041152711rs117867889GA0.010.150.030.021 hitRP11-115F18.1intronic
124041186511rs17467095CA0.010.150.030.02ESC5 altered motifs1 hitRP11-115F18.1intronic
124041187511rs17444702CT0.010.150.030.02ESC5 altered motifs1 hitRP11-115F18.1intronic
124041279211rs17467102TC0.010.150.030.02TATA,Zfp4101 hitRP11-115F18.1intronic
124041290811rs17467109AC0.010.150.030.02ERalpha-a,Pou1f11 hitRP11-115F18.1intronic
124041303011rs117908462AG0.010.150.030.02HNF1,Myc1 hitRP11-115F18.1intronic
124041310911rs74565412AG0.010.150.030.021 hitRP11-115F18.1intronic
124041315511rs75697282AG0.010.150.040.02Pou2f2,TATA1 hitRP11-115F18.1intronic
124041329511rs12427134CT0.010.160.030.026 altered motifs1 hitRP11-115F18.1intronic
124041332711rs12424424GA0.010.150.030.028 altered motifs1 hitRP11-115F18.1intronic
124041392511rs17492152CA0.010.150.030.024 altered motifs1 hitRP11-115F18.1intronic
124041407411rs17444744TG0.010.150.030.02ESC12 altered motifs1 hitRP11-115F18.1intronic
124041412811rs17444751GA0.010.150.030.02ESC6 altered motifs1 hitRP11-115F18.1intronic
124041419111rs75200805AG0.010.150.030.02ESCPou1f1,Pou2f21 hitRP11-115F18.1intronic
124041442811rs181457935AG0.010.150.030.02Gfi1,HDAC2,Sox1 hitRP11-115F18.1intronic
124041487011rs4768252CT0.010.150.030.026 altered motifs1 hitRP11-115F18.1missense
124041492411rs4768253CT0.010.150.030.021 hitRP11-115F18.1missense
124041499711rs4768254GA0.010.150.030.0224 altered motifs1 hitRP11-115F18.1intronic
124041525111rs148124094CT0.010.150.030.021 hitRP11-115F18.1intronic
124041538811rs117021749GC0.010.150.030.02STAT1 hitRP11-115F18.1missense
124041540411rs191075898TC0.000.130.030.025 altered motifs1 hitRP11-115F18.1synonymous
124041545411rs80220485CT0.010.150.030.026 altered motifs1 hitRP11-115F18.1missense
124041553611rs117909126CT0.010.150.030.027 altered motifs1 hitRP11-115F18.1intronic
124041570011rs17467137TC0.010.150.030.025 altered motifs1 hitRP11-115F18.1synonymous
124041594811rs11564253AG0.010.150.030.02Ets1 hitRP11-115F18.1intronic
124041618111rs142268259CA0.010.150.030.02HDAC2,RORalpha11 hitRP11-115F18.1missense
124041630511rs183347939TC0.010.150.030.02Irf,Pou2f21 hitRP11-115F18.1intronic
124041630711rs143377635AAT0.010.150.030.026 altered motifs1 hitRP11-115F18.1intronic
124041635911rs17467144GA0.010.160.030.0211 altered motifs1 hitRP11-115F18.1missense
124041637511rs117237084AG0.010.160.030.025 altered motifs1 hitRP11-115F18.1missense
124041641111rs118081441GA0.010.150.030.02Isl2,RXRA,Sox1 hitRP11-115F18.1missense
124041643611rs116946443TC0.010.150.030.02RXRA,ZEB11 hitRP11-115F18.1splice donor
124041665111rs144495455AC0.010.150.030.02PLCNTGmeb11 hitRP11-115F18.1intronic
124041680711rs139590240CA0.010.150.030.02CHD21 hitRP11-115F18.1intronic
124041685011rs143615969AC0.010.150.030.024 altered motifs1 hitRP11-115F18.1intronic
124041702011rs147196025AG0.010.150.030.02CTCF,Rad211 hitRP11-115F18.1intronic
124041702211rs140578439GC0.010.150.030.021 hitRP11-115F18.1intronic
124041716011rs17444765GA0.010.150.030.02Rad211 hitRP11-115F18.1intronic
124041786311rs11564145GC0.010.150.030.02Foxp3,Spz11 hitRP11-115F18.1intronic
124041804611rs141315343TG0.010.150.030.02ATF31 hitRP11-115F18.1intronic
124041834611rs7487333CT0.010.150.030.02PLZF1 hitRP11-115F18.1intronic
124041840511rs7485401TA0.010.150.030.024 altered motifs1 hitRP11-115F18.1intronic
124041845611rs35462920TA0.010.160.030.02Foxp1,Mef21 hitRP11-115F18.1intronic
124041850811rs7487209GA0.010.150.030.027 altered motifs1 hitRP11-115F18.1intronic
124041859011rs5015147GA0.010.150.030.021 hitRP11-115F18.1intronic
124041861711rs5015148TG0.010.150.030.02Foxp1,Sox,Zfp1051 hitRP11-115F18.1intronic
124041869211rs5015149AT0.010.150.030.026 altered motifs1 hitRP11-115F18.1intronic
124041883611rs148180074AG0.010.150.030.024 altered motifs1 hitRP11-115F18.1intronic
124041894911rs150306906AG0.010.150.030.021 hitRP11-115F18.1intronic
124041907111rs118122990CT0.010.150.030.02Ets1 hitRP11-115F18.1intronic
124041909411rs117435671TC0.010.150.030.02RBP-Jkappa1 hitRP11-115F18.1intronic
124041913911rs117844952TC0.010.150.030.02Bbx1 hitRP11-115F18.1intronic
124041960911rs149308025GA0.010.150.030.02AP-1,Rad211 hitRP11-115F18.1intronic
124041964711rs116911200AC0.010.150.030.02MZF1::1-41 hitRP11-115F18.1intronic
124041976811rs76672535CT0.010.150.030.025 altered motifs1 hitRP11-115F18.1intronic
124041992411rs117482806GA0.010.150.030.02DMRT1,SRF1 hitRP11-115F18.1intronic
124042001311rs17467157AT0.010.150.030.02Nkx3,Pou1f1,Pou2f21 hitRP11-115F18.1intronic
124042030511rs2114566AG0.010.150.030.02Zbtb31 hitRP11-115F18.1missense
124042039511rs17467164GA0.010.150.030.02Mef2,SRF,THAP11 hitRP11-115F18.1missense
124042046511rs17467171TC0.010.150.030.024 altered motifs1 hitRP11-115F18.1intronic
124042046811rs17467178AT0.010.150.030.029 altered motifs1 hitRP11-115F18.1intronic
124042054811rs200903764TTGAT0.010.150.030.026 altered motifs1 hitRP11-115F18.1intronic
124042078211rs4768258GA0.010.150.030.02Eomes,Pou2f21 hitRP11-115F18.1intronic
124042085911rs4768259CA0.010.150.030.02CTCFL1 hitRP11-115F18.1intronic
124042120511rs80212515CG0.010.150.030.02Cdx,Foxp1,HNF11 hitRP11-115F18.1splice acceptor
124042125811rs149221842CT0.010.150.030.02AP-1,GR1 hitRP11-115F18.1missense
124042145911rs116937891TC0.010.150.030.02Foxq1,GATA,p3001 hitRP11-115F18.1intronic
124042149611rs148144443TTAAT0.010.160.030.0212 altered motifs1 hitRP11-115F18.1intronic
124042175811rs11176553CT0.020.150.030.028 altered motifs1 hitRP11-115F18.1intronic
124042240911rs200610116TTTTGT0.010.150.030.0214 altered motifs1 hitRP11-115F18.1intronic
124042265511rs201714398AATCTT0.010.150.030.0211 altered motifsRP11-115F18.1intronic
124042267911rs138069086AG0.010.150.030.021 hitRP11-115F18.1intronic
124042270211rs77099153CT0.010.150.030.021 hitRP11-115F18.1intronic
124042294211rs12425211TG0.010.150.030.027 altered motifs1 hitRP11-115F18.1intronic
124042322011rs148542465TG0.010.150.030.02CAC-binding-protein1 hitRP11-115F18.1intronic
124042325411rs117036566GT0.010.150.030.02BCL,CTCF,PLZF1 hitRP11-115F18.1intronic
124042343711rs144937184AG0.010.160.030.02GLI,Pax-41 hitRP11-115F18.1intronic
124042355711rs17467185TG0.010.150.030.0225 altered motifs1 hitRP11-115F18.1intronic
124042364611rs147968276CT0.010.150.030.029 altered motifs1 hitRP11-115F18.1intronic
124042401611rs145798252GC0.010.160.030.021 hitRP11-115F18.1intronic
124042407711rs138435304AG0.010.160.030.02Foxl1,Msx-1,Pdx11 hitRP11-115F18.1intronic
124042419311rs11564144AC0.010.160.030.029 altered motifs1 hitRP11-115F18.1intronic
124042436611rs11176564CT0.010.160.030.02IPSCHNF4,Nanog,Sin3Ak-201 hitRP11-115F18.1intronic
124042464811rs12425677TC0.010.160.030.02CDP,TEF-11 hitRP11-115F18.1intronic
124042466011rs12425678TC0.010.160.030.02GR1 hitRP11-115F18.1intronic
124042536911rs150011257CT0.010.160.030.02Zfx1 hitRP11-115F18.1intronic
124042538711rs144318248AC0.010.160.030.025 altered motifs1 hitRP11-115F18.1intronic
124042559311rs201448645TCT0.010.160.030.0223 altered motifs1 hitRP11-115F18.1intronic
124042592211rs11564250AG0.010.160.030.02GATA,Zfp4101 hitRP11-115F18.1intronic
124042614711rs17444840GA0.010.160.030.024 altered motifs1 hitRP11-115F18.1intronic
124042619911rs11564126AG0.010.160.030.021 hitRP11-115F18.1intronic
124042632211rs17467213GA0.010.160.030.025 altered motifs1 hitRP11-115F18.1intronic
124042636311rs17462180TA0.010.160.030.0215 altered motifs1 hitRP11-115F18.1intronic
124042660111rs11564249CT0.010.160.030.021 hitRP11-115F18.1synonymous
124042706011rs17444875GA0.010.160.030.02Foxk1,Nr2e31 hitRP11-115F18.1intronic
124042735711rs17467249TG0.010.160.030.025 altered motifs1 hitRP11-115F18.1intronic
124042747611rs17467263GC0.010.160.030.02BHLHE40,Rad21,TBX51 hitRP11-115F18.1missense
124042763311rs11564143AG0.010.160.030.02DBP,NF-I1 hitRP11-115F18.1intronic
124042794311rs17444903TA0.010.150.030.025 altered motifs1 hitRP11-115F18.1intronic
124042799311rs61736852GA0.010.150.030.02HDAC2,Irf,TATA1 hitRP11-115F18.1missense
124042804511rs11564170CA0.010.150.030.02NF-AT,NF-AT11 hitRP11-115F18.1missense
124042806911rs17467284GT0.010.150.030.02Bcl6b,p531 hitRP11-115F18.1missense
124042815811rs17467291TG0.010.150.030.02Pou2f2,TATA1 hitRP11-115F18.1intronic
124042829611rs117981694GA0.010.150.030.02Bcl6b1 hitRP11-115F18.1intronic
124042854411rs11564246TC0.010.150.030.024 altered motifs1 hitRP11-115F18.1intronic
124042879511rs145671396GA0.000.150.030.028 altered motifs1 hitRP11-115F18.1intronic
124042902011rs80118503GA0.010.150.030.02AFP1,Mef2,Pax-41 hitRP11-115F18.1intronic
124042919511rs77220017TC0.010.150.030.02Nr2e3,Nr2f21 hitRP11-115F18.1intronic
124042920011rs75771828GA0.010.150.030.02CEBPB1 hitRP11-115F18.1intronic
124042941611rs11564111CT0.010.150.030.02GR,Nanog,Sox1 hitRP11-115F18.1intronic
124042942811rs80205770AG0.010.150.030.024 altered motifs1 hitRP11-115F18.1intronic
124042967211rs10506156GA0.010.150.030.02BDP1,CTCF,Rad211 hitRP11-115F18.1missense
124042969111rs10506157TC0.010.150.030.02Arid5a,Foxa1 hitRP11-115F18.1intronic
124042985311rs143228478GGTA0.010.150.030.027 altered motifs1 hitRP11-115F18.1intronic
124043035211rs10506158GA0.010.150.030.02NERF1a,PLZF1 hitRP11-115F18.1intronic
124043041911rs189186053AC0.010.140.030.025 altered motifs1 hitRP11-115F18.1intronic
124043043211rs78437109GA0.010.150.030.021 hitRP11-115F18.1intronic
124043046411rs35673053GT0.010.150.030.021 hitRP11-115F18.1intronic
124043057411rs11564244TC0.010.150.030.024 altered motifs1 hitRP11-115F18.1intronic
124043114611rs10506159AG0.010.150.030.02GATA,STAT,Smad31 hitRP11-115F18.1intronic
124043130611rs11564242TC0.010.150.030.02MAFF,MAFKCTCF,SRF1 hitRP11-115F18.1intronic
124043141511rs11564241AG0.010.150.030.02MAFF,MAFKPou2f21 hitRP11-115F18.1intronic
124043153311rs11564114TA0.010.150.030.02DMRT4,E2F,Irf1 hitRP11-115F18.1intronic
124043174011rs11564240CG0.010.150.030.021 hitRP11-115F18.1intronic
124043179711rs146015937AAGAAGA0.010.150.030.02Pou2f2,Pou6f11 hitRP11-115F18.1intronic
124043191311rs10506160CA0.010.150.030.021 hitRP11-115F18.1intronic
124043221911rs11564169GT0.010.150.030.029 altered motifs1 hitRP11-115F18.1intronic
124043224811rs75197709TA0.010.150.030.02HP1-site-factor,Mef2,TATA1 hitRP11-115F18.1intronic
124043233611rs143218501TG0.010.150.030.024 altered motifs1 hitRP11-115F18.1intronic
124043252011rs10506161CT0.010.150.030.025 altered motifs1 hitRP11-115F18.1intronic
124043259511rs142614989CATC0.010.150.030.0216 altered motifs1 hitRP11-115F18.1intronic
124043273311rs11564104TC0.010.150.030.024 altered motifs1 hitRP11-115F18.1synonymous
124043283711rs150783999CTTAAC0.010.150.030.0236 altered motifs1 hitRP11-115F18.1intronic
124043288511rs79306701TA0.010.150.030.021 hitRP11-115F18.1intronic
124043295911rs141522472TC0.010.150.030.02Pou2f21 hitRP11-115F18.1intronic
124043327911rs10506163AG0.010.150.030.02SKIN9 altered motifs1 hitRP11-115F18.1intronic
124043341611rs76476033CA0.010.150.030.02BLDCDP,FXR,Pax-21 hitRP11-115F18.1intronic
124043402011rs11564238TG0.010.150.030.02Fox,GR1 hitRP11-115F18.1intronic
124043408911rs17444966TC0.010.150.030.0210 altered motifs1 hitRP11-115F18.1intronic
124043421711rs11564237TC0.010.150.030.02GR1 hitRP11-115F18.1intronic


Query SNP: rs2413583 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
223926376811rs2413583CT0.320.140.040.16BLD, LIVDobox4,SREBP,Zfp4102 hits70 hits1 hit2.7kb 5' of AL031590.1


Query SNP: rs12521868 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
513244870111rs12521868GT0.050.280.000.387 tissues5 altered motifs1 hit5 hits45 hitsC5orf56intronic


Query SNP: rs2024092 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
19112365311rs4807570GA0.310.330.130.20ESDR10 tissues4 tissues6 altered motifs3 hitsSBNO2intronic
19112403211rs2024092GA0.320.330.130.2010 tissues5 tissues5 altered motifs1 hit452 hits4 hitsSBNO2intronic


Query SNP: rs516246 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
194870285111rs679574CG0.490.380.010.43SPLNRREB-131 hitsFUT2intronic
194870288811rs516316GC0.490.380.010.43SPLNMyc,Nrf11 hit30 hitsFUT2intronic
194870291511rs516246CT0.490.380.010.43SPLN8 altered motifs3 hits178 hits31 hitsFUT2intronic
194870320511rs681343CT0.490.380.010.431 hit31 hitsFUT2synonymous
194870341711rs601338GA0.490.380.010.43HDAC2,HNF42 hits31 hitsFUT2nonsense


Query SNP: rs80262450 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
181281892311rs80262450GA0.010.030.140.11BRNMef2,ZBTB334 hitsPTPN2intronic


Query SNP: rs1819333 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
616695927611rs2149090TC0.760.570.610.524 tissues11 tissues8 tissuesPOL2,NFKB,GATA27 altered motifs17 hits2.1kb 5' of RNASET2
616695929811rs2149091CT0.760.570.610.524 tissues11 tissues11 tissuesPOL2,NFKB,GATA2GATA,TAL119 hits2.1kb 5' of RNASET2
616695949011rs2149092CT0.760.570.610.524 tissues13 tissues27 tissues15 bound proteins11 altered motifs17 hits2.3kb 5' of RNASET2
616696005911rs1819333TG0.760.570.610.52BLD, LIV14 tissues12 tissuesCFOSAP-1,BDP1,NF-I1 hit342 hits19 hits2.9kb 5' of RNASET2
616696032411rs2013815TA0.760.570.610.526 tissues4 tissuesCFOS17 hits3.1kb 5' of RNASET2
616696063111rs2769349GA0.760.570.610.524 tissuesFAC1,Mef2,SIX517 hits3.4kb 5' of RNASET2
616696075111rs4710147GA0.750.570.610.52BLD, GI, LIVBLD,THYM4 altered motifs19 hits3.6kb 5' of RNASET2
616696086511rs2757046CT0.760.570.610.52BLD, GI, LIVBLDPax-517 hits3.7kb 5' of RNASET2
616696100111rs2757047CT0.760.570.610.52BLD, GI, LIV6 altered motifs17 hits3.8kb 5' of RNASET2


Query SNP: rs4409764 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
109952448011rs4409764TG0.400.570.530.52GI6 tissues6 tissuesMrg,Sox,Tgif12 hits136 hits8 hits1.9kb 3' of RP11-129J12.2
109952458811rs4129134CG0.440.570.530.52GI6 tissues4 tissues8 altered motifs8 hits1.8kb 3' of RP11-129J12.2
109952481311rs4129133TC0.400.570.530.526 tissuesESC8 hits1.5kb 3' of RP11-129J12.2


Query SNP: rs10995271 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
106267872611rs10995271GC0.170.280.540.39KAP1,Smad1 hit2 hits5 hits6.7kb 3' of ZNF365


Query SNP: rs17293632 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
156715025811rs17293632CT0.020.140.030.2117 tissues20 tissues41 tissues24 bound proteins25 altered motifs2 hits315 hits2 hitsSMAD3intronic


Query SNP: rs11879191 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
191040223511rs11879191GA0.170.180.460.1821 tissues11 tissues21 tissuesRXRA,Spz1,ZBTB331 hit157 hits15 hitsCDC37intronic


Query SNP: rs2945412 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
172751661711rs2945412GA0.810.650.310.595 tissuesFoxp1,TCF41 hit269 hits9 hitsKSR1intronic


Query SNP: rs148319899 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
124033721111rs10506154AG0.010.160.030.0212 altered motifs1 hitLRRK2intronic
124034642111rs148319899TC0.010.160.030.02Dbx11 hitLRRK2intronic
124034707111rs17484493TC0.010.160.030.0215 altered motifs1 hitLRRK2intronic
124035197511rs12426639AT0.010.160.030.02ESC, IPSC, BRN4 altered motifs1 hitLRRK2intronic


Query SNP: rs11741861 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
515089834711rs11741861AG0.060.120.410.09NF-I1 hit142 hits44 hitsIRGMintronic


Query SNP: rs17293632 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
156715025811rs17293632CT0.020.140.030.2117 tissues20 tissues41 tissues24 bound proteins25 altered motifs2 hits315 hits2 hitsSMAD3intronic


Query SNP: rs1819333 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
616695927611rs2149090TC0.760.570.610.524 tissues11 tissues8 tissuesPOL2,NFKB,GATA27 altered motifs17 hits2.1kb 5' of RNASET2
616695929811rs2149091CT0.760.570.610.524 tissues11 tissues11 tissuesPOL2,NFKB,GATA2GATA,TAL119 hits2.1kb 5' of RNASET2
616695949011rs2149092CT0.760.570.610.524 tissues13 tissues27 tissues15 bound proteins11 altered motifs17 hits2.3kb 5' of RNASET2
616696005911rs1819333TG0.760.570.610.52BLD, LIV14 tissues12 tissuesCFOSAP-1,BDP1,NF-I1 hit342 hits19 hits2.9kb 5' of RNASET2
616696032411rs2013815TA0.760.570.610.526 tissues4 tissuesCFOS17 hits3.1kb 5' of RNASET2
616696063111rs2769349GA0.760.570.610.524 tissuesFAC1,Mef2,SIX517 hits3.4kb 5' of RNASET2
616696075111rs4710147GA0.750.570.610.52BLD, GI, LIVBLD,THYM4 altered motifs19 hits3.6kb 5' of RNASET2
616696086511rs2757046CT0.760.570.610.52BLD, GI, LIVBLDPax-517 hits3.7kb 5' of RNASET2
616696100111rs2757047CT0.760.570.610.52BLD, GI, LIV6 altered motifs17 hits3.8kb 5' of RNASET2


Query SNP: rs1250546 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
107927277511rs1250546AG0.160.330.470.3715 tissues1 hit105 hitsZMIZ1intronic


Query SNP: rs17293632 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
156715025811rs17293632CT0.020.140.030.2117 tissues20 tissues41 tissues24 bound proteins25 altered motifs2 hits315 hits2 hitsSMAD3intronic


Query SNP: rs7869487 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
911481863411rs7869487CT0.950.780.580.704 altered motifs2 hits13kb 5' of TNFSF15


Query SNP: rs7714584 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
515087749211rs9324660CG0.470.150.440.09Mtf133 hitsIRGM
515087782911rs1428555CT0.480.150.440.094 altered motifs1 hit34 hitsIRGM
515087805411rs1428554AG0.480.150.440.09HDAC2,Sox1 hit34 hitsIRGM
515087806511rs1428553GA0.480.150.440.095 altered motifs34 hitsIRGM
515087854511rs7715981AG0.490.150.440.09Foxk1,Mef2,Zfp10534 hitsIRGM
515087874611rs7736554TC0.490.150.440.0913 altered motifs34 hitsIRGM
515087892011rs7736873TC0.490.150.440.094 altered motifs35 hitsIRGM
515087930511rs11747270AG0.490.150.440.09HLF,Hsf1 hit2 hits36 hitsIRGM
515087935811rs11167518CA0.490.150.440.099 altered motifs34 hitsIRGM
515088008011rs10041072TC0.490.150.440.09Foxa,STAT,TCF1235 hitsIRGM
515088100111rs6888206CT0.490.150.430.094 altered motifs31 hitsIRGM
515088134311rs10463310GA0.490.150.440.09Pou2f235 hitsIRGM
515088174511rs73284126GA0.490.150.440.096 altered motifs34 hitsIRGM
515088180211rs61530785AG0.220.130.410.09Mef241 hitsIRGM
515088187411rs7732643AT0.500.150.440.09AFP1,Sox35 hitsIRGM
515088203911rs7732945AG0.490.150.440.094 altered motifs34 hitsIRGM
515088258011rs1820682TC0.490.150.440.095 altered motifs35 hitsIRGM
515088301211rs2344181TG0.500.150.440.098 altered motifs34 hitsIRGM
515088302411rs4560537GA0.490.150.440.09GATA,Pax-4,YY134 hitsIRGM
515088485211rs3900064CG0.420.150.440.0935 hitsIRGM
515088506011rs11746108CA0.490.150.440.09Irf,Nkx234 hitsIRGM
515088510011rs11739619AT0.490.150.440.09TBX5,YY134 hitsIRGM
515088519111rs114244137CA0.490.150.440.09HNF6,Sox,Tgif1IRGM
515088584511rs11167519CT0.490.150.440.0935 hitsIRGM
515088607711rs11167520TC0.490.150.440.09Maf35 hitsIRGM
515088638911rs115823027GA0.490.150.440.09PLZF,Pou5f1IRGM
515088652411rs73284141AG0.490.150.440.0934 hitsIRGM
515088683011rs3906527TA0.490.150.440.0910 altered motifs34 hitsIRGM
515088695611rs2345001GT0.490.150.440.095 altered motifs34 hitsIRGM
515088715611rs3906528GA0.490.150.440.09Foxo,GR,Nrf-234 hitsIRGM
515088779511rs2344180TA0.500.150.440.097 altered motifs34 hitsIRGM
515088781411rs2880791CA0.490.150.440.09CCNT2,GATA34 hitsIRGM
515088800511rs10064334CA0.490.150.440.095 altered motifs34 hitsIRGM
515088858911rs4579248CT0.100.120.410.097 altered motifs43 hitsIRGM
515088864611rs34716763CTGC0.490.150.440.09Gfi1,Pou2f233 hitsIRGM
515088904711rs3857422AG0.490.150.440.099 altered motifs35 hitsIRGM
515088977011rs4352593TA,C,G0.490.150.440.0934 hitsIRGM
515088987911rs7709464CA0.490.150.440.09SIX535 hitsIRGM
515089048911rs10053750AG0.490.150.440.096 altered motifs35 hitsIRGM
515089073011rs7714415AG0.510.150.440.095 altered motifs34 hitsIRGM
515089085811rs7714584AG0.490.150.440.095 altered motifs1 hit1 hit35 hitsIRGM
515089152211rs6579806CT0.490.150.440.098 altered motifs35 hitsIRGM
515089156011rs4958848GC0.490.150.440.099 altered motifs34 hitsIRGM
515089219111rs1863998AT0.500.150.440.094 altered motifs34 hitsIRGM
515089222311rs11167521AG0.490.150.440.097 altered motifs34 hitsIRGM
515089230511rs35564298ATA0.490.150.440.0911 altered motifsIRGM
515089250011rs10057988AG0.490.150.440.094 altered motifs34 hitsIRGM
515089265511rs10052606TG0.490.150.440.096 altered motifs34 hitsIRGM
515089289011rs57001853AG0.490.150.440.09ATF3,NF-E2,Pitx334 hitsIRGM
515089305911rs2217266CA0.490.150.440.09AP-1,HNF134 hitsIRGM
515089329111rs1816256TC0.420.150.440.096 altered motifs35 hitsIRGM
515089878411rs4958426AC0.050.120.410.09BATF45 hitsIRGMintronic
515089965611rs11743488AG0.100.120.410.096 altered motifs44 hitsIRGMintronic


Query SNP: rs11209026 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
16723423211rs79755370CA0.010.060.000.0629 tissues4 bound proteinsIL23Rintronic
16724027511rs11209026GA0.010.060.000.06GR15 hits3 hitsIL23Rmissense
16724200711rs11581607GA0.010.060.000.064 altered motifsIL23Rintronic
16724766311rs113935720TC0.010.060.000.064 altered motifsIL23Rintronic


Query SNP: rs11209026 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
16723423211rs79755370CA0.010.060.000.0629 tissues4 bound proteinsIL23Rintronic
16724027511rs11209026GA0.010.060.000.06GR15 hits3 hitsIL23Rmissense
16724200711rs11581607GA0.010.060.000.064 altered motifsIL23Rintronic
16724766311rs113935720TC0.010.060.000.064 altered motifsIL23Rintronic


Query SNP: rs2188962 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
513243511311rs2188962CT0.050.290.000.38LIV16 tissues6 tissuesHNF4A,HNF4G6 altered motifs3 hits324 hits45 hitsC5orf56intronic


Query SNP: rs7282490 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
214419585811rs7282490GA0.790.430.420.60BLD7 tissuesBLD1 hit221 hits4 hits5.4kb 5' of AP001057.1


Query SNP: rs9457247 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
616697868611rs9457247CT0.240.430.390.48STRM5 tissues17 hitsRP1-167A14.2
616697871611rs9459827AT0.240.420.390.48FAT, VAS, BONENRSF17 hitsRP1-167A14.2
616697990711rs1794699GC0.240.430.390.48NF-E217 hitsRP1-167A14.2


Query SNP: rs9989735 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
223024941611rs9989899GA0.160.140.000.184 altered motifs1 hit35 hitsSP140intronic
223025027511rs34855578CG0.150.140.000.184 altered motifs32 hitsSP140intronic
223025028011rs35857956CT0.150.140.000.1832 hitsSP140intronic
223025073911rs9989735GC0.120.130.000.18POL24H820 altered motifs33 hitsSP140intronic
223025091511rs9989835AT0.160.140.000.18ZBRK135 hitsSP140intronic
223025126111rs13385151CT0.120.130.000.18Sp10036 hitsSP140intronic
223025170211rs10498246TA0.160.140.000.18Hoxa13,RXRA35 hitsSP140intronic
223025215911rs7423615CT0.120.130.000.18BLDGATA1 hit35 hitsSP140intronic
223025519911rs28693552GC0.130.140.000.18BLDBLD, THYM21 altered motifs33 hitsSP140intronic


Query SNP: rs9292777 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
54043784611rs9292777CT0.670.510.150.5814 tissues25 tissues6 bound proteins3 hits1 hit1 hit117kb 3' of AC108105.1


Query SNP: rs6651252 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
812854145111rs10103637CA0.320.160.030.10BLDNF-kappaB,PU.1,STATRP11-89M16.1
812854145711rs10103640CT0.320.160.030.10BLD22 altered motifsRP11-89M16.1
812854319711rs938651AC0.320.160.030.10BLD7 tissuesMUSRP11-89M16.1
812854328611rs2011527TC0.320.160.030.10BLD7 tissues4 tissues12 altered motifsRP11-89M16.1
812854391711rs6470637AG0.320.160.030.10BLD6 tissues4 altered motifs2 hitsRP11-89M16.1
812854411011rs16903097TG0.300.150.020.10BLD7 tissuesBLD,THYM,PANCBCL,NRSF,Sin3Ak-20RP11-89M16.1
812854527711rs6982966GA0.350.170.030.10BLD4 altered motifsRP11-89M16.1
812854534611rs6982716AG0.360.170.030.10BLDRP11-89M16.1
812854570611rs73374987CT0.270.150.030.10BLD4 altered motifsRP11-89M16.1
812854706511rs10098765AG0.290.150.010.10Nrf1,TATA,TCF4RP11-89M16.1
812854848211rs10678821TTTTTC0.290.150.020.107 altered motifsRP11-89M16.1
812854897011rs77247401CCTG0.290.160.030.10GR,Nkx2RP11-89M16.1
812854907711rs73374998TA0.360.170.030.10PLCNT,LNGRP11-89M16.1
812854962011rs73375000CT0.290.150.030.10Eomes,Spz1RP11-89M16.1
812855018411rs10089868AC0.290.150.010.104 altered motifsRP11-89M16.1
812855021211rs10089972CT0.290.150.010.10GR,Sin3Ak-20,YY1RP11-89M16.1
812855269811rs73376904AT0.290.160.030.10BLD, GI, LIVGI5 altered motifsRP11-89M16.1
812855493511rs6651252TC0.330.170.030.10BLD, PANC, LNG10 tissues21 tissues12 bound proteinsSP1,TCF42 hits135 hitsRP11-89M16.1


Query SNP: rs7097656 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
108049107511rs7097656TC0.970.880.990.8114 tissuesBLD4 altered motifs240 hits9 hitsTSPAN14intronic
108049178811rs7922621CA0.950.880.990.81BLD, LIV19 tissues13 tissues11 bound proteinsCEBPB,Pax-58 hitsTSPAN14intronic
108049201311rs7910643GA0.960.880.990.81BLD, LIV18 tissues7 tissuesPOL2,TCF4ZBTB336 hitsTSPAN14intronic
108049394511rs7900536CA0.950.880.990.81BLD, THYM19 tissues28 tissuesBAF155,Maf2 hits9 hitsTSPAN14intronic
108049422811rs6586028CT0.980.890.990.81BLD20 tissuesBLD,SKINRad21,ZEB16 hitsTSPAN14intronic
108049781411rs7896832TC0.950.880.990.814 tissues23 tissues30 tissues19 bound proteins8 hitsTSPAN14intronic
108050551511rs9633740AG0.960.880.990.81GI, LNG, LIV23 tissues33 tissuesCTCF,ZNF263Zfx8 hitsTSPAN14intronic


Query SNP: rs8005161 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
148799854311rs10220572CG0.410.170.190.09GI,BLD,BLDHNF4,Hdx1 hit2.1kb 5' of U6
148800079711rs8006352GT0.410.170.190.09BLD6 altered motifs1 hit4.3kb 5' of GPR65
148800122811rs8007233GA0.410.170.190.09BLDDMRT11 hit3.9kb 5' of GPR65
148800403711rs73312867AC0.180.120.190.09BLDBLDBLD9 altered motifs1.1kb 5' of GPR65
148800479711rs28667727TC0.410.170.190.09BLD, GIBLD, THYMBLD,BLD5 altered motifs1 hit326bp 5' of GPR65
148800625111rs8005161CT0.410.170.190.096 tissuesBLD, GI9 tissues4 bound proteins2 hits119 hits3 hitsGPR65intronic
148800943511rs7216089012-merT0.410.170.190.09BLDBLD, THYMBLDLUN-1,Pou3f11 hitGPR65intronic
148801153811rs3742704AC0.180.130.190.09BLD4 tissuesPax-41 hit2 hitsRP11-300J18.2missense
148801248311rs12434101TC0.200.130.190.09BLDLNGRP11-300J18.23'-UTR
148802247711rs11624293TC0.200.130.190.09HRT, LIVPRDM1,Zbtb32 hitsRP11-300J18.1


Query SNP: rs3091316 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
173426664611rs3091315AG0.410.470.620.32FAT, BLD5 altered motifs1 hit363 hits3.6kb 5' of CCL7
173426695511rs3091316GA0.260.460.620.32BLDGmeb1,Mef2,Pou2f22 hits3.3kb 5' of CCL7


Query SNP: rs2476601 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
111383494611rs2476601AG1.000.961.000.90BRST, BLD, SKIN4 tissuesSTAT3Ets,NERF1a,PU.114 hits3 hits1 hitPTPN22


Query SNP: rs2542151 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
18127748951-1rs888270GA0.010.110.160.15BLD, THYMBLDDobox410 hitsRP11-973H7.1
181277559211rs2847260CT0.800.860.840.854 tissuesBLD,THYM8 altered motifs10 hitsRP11-973H7.1
181277585211rs2542147GT0.800.860.840.855 tissues5 tissuesSIX5,p30010 hitsRP11-973H7.1
181277757411rs2542148CG0.820.860.840.8514 tissuesLNG4 tissues11 hits1.7kb 5' of RP11-973H7.1
181277871611rs2847278CT0.830.870.840.858 altered motifs12 hits2.8kb 5' of RP11-973H7.1
181277901911rs2542149GA0.830.870.840.85IPSCCTCF,RAD21Zfx12 hits3.1kb 5' of RP11-973H7.1
181277934311rs2847280AG0.830.870.840.85IPSCESDR,IPSC5 altered motifs12 hits3.4kb 5' of RP11-973H7.1
181277976411rs2542150GC0.830.870.840.85IPSCIPSCAP-1,NRSF,Pax-812 hits3.8kb 5' of RP11-973H7.1
181277994811rs2542151GT0.830.870.840.85Egr-1,Ets,GR6 hits12 hits4kb 5' of RP11-973H7.1


Query SNP: rs2284553 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
213340438911rs2284553AG0.940.660.610.6124 tissues40 tissuesPOL2,POL24H81 hit222 hits13 hitsIFNGR2intronic


Query SNP: rs3197999 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
34968409911rs3197999GA0.240.220.060.315 tissuesOVRYSMC3,TCF12,ZBRK16 hits467 hits59 hitsMST1missense


Query SNP: rs5743289 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
165072286311rs5743289CT0.020.100.000.16BLD, LIVNkx23 hits505 hits3 hitsNOD2intronic


Query SNP: rs6062504 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
206371755511rs6062504AG0.740.730.360.70IPSC, BLDZbtb31 hit4 hitsZGPATintronic


Query SNP: rs1819658 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
105815339011rs1819658CT0.470.230.440.204 tissuesPLCNT,BLDAP-2,SIX51 hit2 hits15 hits38kb 3' of IPMK


Query SNP: rs2945412 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
172751661711rs2945412GA0.810.650.310.595 tissuesFoxp1,TCF41 hit269 hits9 hitsKSR1intronic


Query SNP: rs12942547 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
174237552611rs12942547AG0.420.290.380.42BLDBRST, BLD, BRN8 altered motifs1 hit340 hits1 hitSTAT3intronic


Query SNP: rs12946510 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
173975612411rs12946510CT0.170.360.350.474 tissues11 tissues13 tissues13 bound proteins7 altered motifs1 hit238 hits33 hits1.6kb 3' of RP11-94L15.2


Query SNP: rs6651252 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
812854145111rs10103637CA0.320.160.030.10BLDNF-kappaB,PU.1,STATRP11-89M16.1
812854145711rs10103640CT0.320.160.030.10BLD22 altered motifsRP11-89M16.1
812854319711rs938651AC0.320.160.030.10BLD7 tissuesMUSRP11-89M16.1
812854328611rs2011527TC0.320.160.030.10BLD7 tissues4 tissues12 altered motifsRP11-89M16.1
812854391711rs6470637AG0.320.160.030.10BLD6 tissues4 altered motifs2 hitsRP11-89M16.1
812854411011rs16903097TG0.300.150.020.10BLD7 tissuesBLD,THYM,PANCBCL,NRSF,Sin3Ak-20RP11-89M16.1
812854527711rs6982966GA0.350.170.030.10BLD4 altered motifsRP11-89M16.1
812854534611rs6982716AG0.360.170.030.10BLDRP11-89M16.1
812854570611rs73374987CT0.270.150.030.10BLD4 altered motifsRP11-89M16.1
812854706511rs10098765AG0.290.150.010.10Nrf1,TATA,TCF4RP11-89M16.1
812854848211rs10678821TTTTTC0.290.150.020.107 altered motifsRP11-89M16.1
812854897011rs77247401CCTG0.290.160.030.10GR,Nkx2RP11-89M16.1
812854907711rs73374998TA0.360.170.030.10PLCNT,LNGRP11-89M16.1
812854962011rs73375000CT0.290.150.030.10Eomes,Spz1RP11-89M16.1
812855018411rs10089868AC0.290.150.010.104 altered motifsRP11-89M16.1
812855021211rs10089972CT0.290.150.010.10GR,Sin3Ak-20,YY1RP11-89M16.1
812855269811rs73376904AT0.290.160.030.10BLD, GI, LIVGI5 altered motifsRP11-89M16.1
812855493511rs6651252TC0.330.170.030.10BLD, PANC, LNG10 tissues21 tissues12 bound proteinsSP1,TCF42 hits135 hitsRP11-89M16.1


Query SNP: rs6716753 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
223023241411rs6716753TC0.200.150.000.19BLD, BRNCEBPB1 hit105 hits35 hitsAC009950.1intronic
223023332511rs6436922AG0.210.170.000.19BLDPLZF,Pax-4,TATA35 hitsAC009950.1intronic
223023376311rs1946410CT0.200.150.000.19BLDPLZF,TATA32 hitsAC009950.1intronic


Query SNP: rs925255 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
22839192711rs925255CT0.230.320.230.4623 tissues43 tissues6 bound proteinsHoxb13,Hoxd10,OTX1 hit538 hits2 hitsAC104695.3intronic


Query SNP: rs1842076 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
54023605311rs17822785AG0.080.260.040.26STRM, SKINCEBPA,CEBPB,STAT25kb 5' of LINC00604
54023630011rs4957259CT0.150.270.040.26STRMLNGAFP1,Foxj2,Mef224kb 5' of LINC00604
54023654611rs1842077GA0.150.270.040.26Bcl6b,Nkx3,STAT24kb 5' of LINC00604
54023691611rs1842076TC0.150.270.040.265 altered motifs24kb 5' of LINC00604
54023875511rs1981843AC0.070.250.040.264 altered motifs22kb 5' of LINC00604
54023913011rs148124370CCAGAT0.140.270.040.2610 altered motifs22kb 5' of LINC00604
54023957011rs17822905AC0.110.260.040.268 altered motifs21kb 5' of LINC00604
54024124511rs72748435GT0.110.250.040.26MAFKCEBPG,CIZ,FAC119kb 5' of LINC00604
54024145511rs4594900CT0.130.260.040.26Pbx319kb 5' of LINC00604
54024267211rs1544775GA0.110.260.040.26VASCFOS,GATA218kb 5' of LINC00604
54024268111rs1544776CG0.110.260.040.26VASCFOS,GATA2En-118kb 5' of LINC00604
54024316211rs17823013AG0.080.250.040.26Foxo,Pax-4,RXRA17kb 5' of LINC00604
54024332511rs138526127TCT0.060.250.040.26Ets,Sox17kb 5' of LINC00604
54024352211rs17823049TG0.110.260.040.26ERalpha-a,FXR,RORalpha117kb 5' of LINC00604
54024399311rs12517667GA0.070.250.040.26NRSF,Pax-417kb 5' of LINC00604
54024442811rs4957124TA0.110.260.040.26Pbx-1,Pou3f216kb 5' of LINC00604


Query SNP: rs212388 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
615906940411rs212388CT0.320.450.370.58ESC, IPSC, BLDIPSC, BLD, THYM5 tissuesMAXIk-1,MZF1::1-4,STAT3 hits379 hits1 hit4.1kb 5' of RP1-111C20.3


Query SNP: rs2284553 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
213340438911rs2284553AG0.940.660.610.6124 tissues40 tissuesPOL2,POL24H81 hit222 hits13 hitsIFNGR2intronic


Query SNP: rs395157 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
53886763011rs395157CT0.400.460.240.528 tissues4 tissuesEvi-1,Gfi1,NF-AT2 hitsOSMRintronic


Query SNP: rs11190140 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
109953171511rs10883370TC0.600.590.540.514 tissues8 hits537bp 5' of RP11-129J12.2
109953183611rs11190140TC0.600.590.540.514 tissues7 tissuesESDR,BLD,BLDNF-AT1,Sp100,TATA2 hits1 hit8 hits658bp 5' of RP11-129J12.2


Query SNP: rs11747270 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
515087749211rs9324660CG0.470.150.440.09Mtf133 hitsIRGM
515087782911rs1428555CT0.480.150.440.094 altered motifs1 hit34 hitsIRGM
515087805411rs1428554AG0.480.150.440.09HDAC2,Sox1 hit34 hitsIRGM
515087806511rs1428553GA0.480.150.440.095 altered motifs34 hitsIRGM
515087854511rs7715981AG0.490.150.440.09Foxk1,Mef2,Zfp10534 hitsIRGM
515087874611rs7736554TC0.490.150.440.0913 altered motifs34 hitsIRGM
515087892011rs7736873TC0.490.150.440.094 altered motifs35 hitsIRGM
515087930511rs11747270AG0.490.150.440.09HLF,Hsf1 hit2 hits36 hitsIRGM
515087935811rs11167518CA0.490.150.440.099 altered motifs34 hitsIRGM
515088008011rs10041072TC0.490.150.440.09Foxa,STAT,TCF1235 hitsIRGM
515088100111rs6888206CT0.490.150.430.094 altered motifs31 hitsIRGM
515088134311rs10463310GA0.490.150.440.09Pou2f235 hitsIRGM
515088174511rs73284126GA0.490.150.440.096 altered motifs34 hitsIRGM
515088180211rs61530785AG0.220.130.410.09Mef241 hitsIRGM
515088187411rs7732643AT0.500.150.440.09AFP1,Sox35 hitsIRGM
515088203911rs7732945AG0.490.150.440.094 altered motifs34 hitsIRGM
515088258011rs1820682TC0.490.150.440.095 altered motifs35 hitsIRGM
515088301211rs2344181TG0.500.150.440.098 altered motifs34 hitsIRGM
515088302411rs4560537GA0.490.150.440.09GATA,Pax-4,YY134 hitsIRGM
515088485211rs3900064CG0.420.150.440.0935 hitsIRGM
515088506011rs11746108CA0.490.150.440.09Irf,Nkx234 hitsIRGM
515088510011rs11739619AT0.490.150.440.09TBX5,YY134 hitsIRGM
515088519111rs114244137CA0.490.150.440.09HNF6,Sox,Tgif1IRGM
515088584511rs11167519CT0.490.150.440.0935 hitsIRGM
515088607711rs11167520TC0.490.150.440.09Maf35 hitsIRGM
515088638911rs115823027GA0.490.150.440.09PLZF,Pou5f1IRGM
515088652411rs73284141AG0.490.150.440.0934 hitsIRGM
515088683011rs3906527TA0.490.150.440.0910 altered motifs34 hitsIRGM
515088695611rs2345001GT0.490.150.440.095 altered motifs34 hitsIRGM
515088715611rs3906528GA0.490.150.440.09Foxo,GR,Nrf-234 hitsIRGM
515088779511rs2344180TA0.500.150.440.097 altered motifs34 hitsIRGM
515088781411rs2880791CA0.490.150.440.09CCNT2,GATA34 hitsIRGM
515088800511rs10064334CA0.490.150.440.095 altered motifs34 hitsIRGM
515088858911rs4579248CT0.100.120.410.097 altered motifs43 hitsIRGM
515088864611rs34716763CTGC0.490.150.440.09Gfi1,Pou2f233 hitsIRGM
515088904711rs3857422AG0.490.150.440.099 altered motifs35 hitsIRGM
515088977011rs4352593TA,C,G0.490.150.440.0934 hitsIRGM
515088987911rs7709464CA0.490.150.440.09SIX535 hitsIRGM
515089048911rs10053750AG0.490.150.440.096 altered motifs35 hitsIRGM
515089073011rs7714415AG0.510.150.440.095 altered motifs34 hitsIRGM
515089085811rs7714584AG0.490.150.440.095 altered motifs1 hit1 hit35 hitsIRGM
515089152211rs6579806CT0.490.150.440.098 altered motifs35 hitsIRGM
515089156011rs4958848GC0.490.150.440.099 altered motifs34 hitsIRGM
515089219111rs1863998AT0.500.150.440.094 altered motifs34 hitsIRGM
515089222311rs11167521AG0.490.150.440.097 altered motifs34 hitsIRGM
515089230511rs35564298ATA0.490.150.440.0911 altered motifsIRGM
515089250011rs10057988AG0.490.150.440.094 altered motifs34 hitsIRGM
515089265511rs10052606TG0.490.150.440.096 altered motifs34 hitsIRGM
515089289011rs57001853AG0.490.150.440.09ATF3,NF-E2,Pitx334 hitsIRGM
515089305911rs2217266CA0.490.150.440.09AP-1,HNF134 hitsIRGM
515089329111rs1816256TC0.420.150.440.096 altered motifs35 hitsIRGM
515089878411rs4958426AC0.050.120.410.09BATF45 hitsIRGMintronic
515089965611rs11743488AG0.100.120.410.096 altered motifs44 hitsIRGMintronic


Query SNP: rs6708413 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
210242685011rs35711445TAT0.900.570.580.79BLDBLD4 altered motifsIL18RAPintronic
210242856011rs11694658AG0.880.570.580.79BLDGmeb1,Hdx,ZBTB337 hits15 hitsIL18RAPintronic
210243042011rs2160232GA0.890.570.580.79BLDCIZ,YY17 hits15 hitsIL18RAPintronic
210243197711rs6713618AT0.900.570.580.79BLD4 altered motifs1 hit12 hitsIL18RAPintronic
210243200711rs6716784TG0.900.570.580.79BLDGfi1,Pou1f1,Sox7 hits15 hitsIL18RAPintronic
210243399811rs6543134TG0.900.570.580.79BLD6 altered motifs7 hits15 hitsAC007278.2intronic
210243446511rs2110735AG0.900.570.580.79BLD, MUSHic18 hits14 hitsAC007278.2intronic
210243574611rs2110734CT0.900.570.580.79BLD, GI4 altered motifs7 hits14 hitsIL18RAPintronic
210243653511rs6746271GC0.890.570.580.79BLD8 tissues19 tissues6 bound proteinsMaf7 hits14 hitsIL18RAPintronic
210243798911rs2058660GA0.890.570.580.79BLD7 altered motifs1 hit24 hits14 hitsIL18RAPintronic
210243834311rs2058658TC0.900.570.580.79BLD4 altered motifs7 hits14 hitsIL18RAPintronic
210243918411rs4851009GA0.900.570.580.797 tissues7 hits14 hitsIL18RAPintronic
210244062711rs11677107CA0.820.570.580.79BLD4 altered motifs1 hit12 hitsIL18RAPintronic
210244186811rs1558652GA0.820.570.580.79BLD5 altered motifs1 hit12 hitsIL18RAPintronic
210244356411rs1558650TA0.900.570.580.795 tissuesBLD,BLDCTCF7 hits14 hitsIL18RAPintronic
210244385311rs4851584AG0.830.570.580.79BLDDMRT11 hit12 hitsIL18RAPintronic
210244642011rs6734736CT0.900.570.580.793 hits14 hitsIL18RAPintronic
210244690911rs6708413GA0.900.570.580.796 altered motifs238 hits14 hitsIL18RAPintronic
210244944811rs6543137TG0.890.570.580.795 tissuesCTCF,SMC31 hit11 hitsIL18RAPintronic
210245232711rs7559479GA0.890.570.580.79GI4 altered motifs4 hits14 hitsIL18RAP3'-UTR
210245410811rs917997TC0.890.570.580.79BLD, GITAL12 hits14 hits14 hits1.5kb 3' of IL18RAP
210245452811rs2075185AG0.850.570.580.79GIERalpha-a1 hit12 hits2kb 3' of IL18RAP
210245701411rs4851587CT0.890.570.580.7910 altered motifs1 hit11 hits4.4kb 3' of IL18RAP
210245761911rs6757276TG0.890.570.580.791 hit11 hits5.1kb 3' of IL18RAP
210245803311rs4070554AG0.880.570.580.797 altered motifs3 hits14 hits5.5kb 3' of IL18RAP
210245910111rs6761825TC0.880.570.580.795 altered motifs3 hits14 hits6.5kb 3' of IL18RAP


Query SNP: rs75900472 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
9496795011rs7850675AC0.230.040.060.005 tissuesEomes,TBX5146bp 5' of AL158147.1
9496801911rs10974895TC0.100.040.060.00IPSC,HRT5 altered motifs77bp 5' of AL158147.1
9496833111rs10974896TC0.110.040.060.0019 altered motifs145bp 3' of AL158147.1
9496873511rs16922486TC0.100.020.060.00MUSDMRT1,DMRT4549bp 3' of AL158147.1
9497415311rs61473187GA0.120.030.010.004 tissues5 tissuesCEBPBFoxj2,Mef26kb 3' of AL158147.1
9497532611rs144050958GA0.120.030.010.00Sp47.1kb 3' of AL158147.1
9498080911rs189151190CT0.000.000.000.00BLDSKINAP-14.2kb 5' of JAK2
9498160011rs75900472ACA0.120.020.010.00BLDMUSIk-2,LUN-1,NF-AT3.4kb 5' of JAK2


Query SNP: rs9491891 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
612794510511rs6939352TG0.080.070.000.161 hitRP11-73O6.4
612794897811rs9491890GA0.080.070.000.16BLD, MUSGICdx2,Hoxb91 hitRP11-73O6.4
612795600611rs9491891AG0.070.070.000.16BLDAIRE,YY1RP11-73O6.4
612795613011rs147626184C10-mer0.070.070.000.16BLD, ADRL4 altered motifsRP11-73O6.4
612795708811rs118097399CT0.070.070.000.16BRN, ADRLGI,LNG,MUSBbx,Hbp1,MafRP11-73O6.4
612795921311rs9491892TG0.080.070.000.1612 altered motifsRP11-73O6.4
612795923011rs9482848AT0.080.070.000.167 altered motifsRP11-73O6.4
612795978611rs9491893GA0.080.070.000.16ESDRSP2,Zfp691RP11-73O6.4
612796515611rs113297984GA0.110.080.000.164 altered motifsRP11-73O6.4
612796524111rs72973797GA0.160.090.000.1621 altered motifsRP11-73O6.4
612796601311rs72973800CT0.100.070.000.1610 altered motifsRP11-73O6.4
612796670311rs761332GA0.160.090.000.164 tissuesESDR,BLD,LNGE2A,HNF4RP11-73O6.4
612796739111rs9482849TC0.160.090.000.164 tissuesSKINRP11-73O6.4


Query SNP: rs1363907 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
5968956681-1rs2549783TC0.640.680.680.59BLD, HRTBLDMyc,NF-kappaB105 hitsERAP2intronic
5968988291-1rs3849749AT0.640.690.730.59Smad4105 hitsERAP2intronic
5969007081-1rs251340AG0.640.680.720.59Pax-5102 hitsERAP2intronic
5969042231-1rs2548530TC0.640.680.730.59ESDR, FAT, BLD5 tissues9 altered motifs104 hitsERAP2intronic
5969088451-1rs2549794CT0.640.680.730.59LIV, ADRL, MUS1 hit7 hits116 hitsERAP2intronic
5969117301-1rs2910793GA0.640.680.730.59MUSHNF1,NRSF,TCF12102 hitsERAP2intronic
5969139441-1rs2859491TC0.640.690.720.59102 hitsERAP2intronic
59691597111rs2351011CA0.360.320.280.41Crx,Pitx2,SREBP102 hitsERAP2intronic
59691637511rs2927609GA0.360.320.280.41Sox105 hitsERAP2intronic
59691709911rs1363907GA0.360.310.280.41Pax-4,Sox1 hit177 hits111 hitsERAP2intronic
59691729411rs1820148AG0.360.320.280.418 altered motifs101 hitsERAP2intronic
59691740011rs1363908TC0.360.320.280.417 altered motifs102 hitsERAP2intronic


Query SNP: rs6651252 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
812854145111rs10103637CA0.320.160.030.10BLDNF-kappaB,PU.1,STATRP11-89M16.1
812854145711rs10103640CT0.320.160.030.10BLD22 altered motifsRP11-89M16.1
812854319711rs938651AC0.320.160.030.10BLD7 tissuesMUSRP11-89M16.1
812854328611rs2011527TC0.320.160.030.10BLD7 tissues4 tissues12 altered motifsRP11-89M16.1
812854391711rs6470637AG0.320.160.030.10BLD6 tissues4 altered motifs2 hitsRP11-89M16.1
812854411011rs16903097TG0.300.150.020.10BLD7 tissuesBLD,THYM,PANCBCL,NRSF,Sin3Ak-20RP11-89M16.1
812854527711rs6982966GA0.350.170.030.10BLD4 altered motifsRP11-89M16.1
812854534611rs6982716AG0.360.170.030.10BLDRP11-89M16.1
812854570611rs73374987CT0.270.150.030.10BLD4 altered motifsRP11-89M16.1
812854706511rs10098765AG0.290.150.010.10Nrf1,TATA,TCF4RP11-89M16.1
812854848211rs10678821TTTTTC0.290.150.020.107 altered motifsRP11-89M16.1
812854897011rs77247401CCTG0.290.160.030.10GR,Nkx2RP11-89M16.1
812854907711rs73374998TA0.360.170.030.10PLCNT,LNGRP11-89M16.1
812854962011rs73375000CT0.290.150.030.10Eomes,Spz1RP11-89M16.1
812855018411rs10089868AC0.290.150.010.104 altered motifsRP11-89M16.1
812855021211rs10089972CT0.290.150.010.10GR,Sin3Ak-20,YY1RP11-89M16.1
812855269811rs73376904AT0.290.160.030.10BLD, GI, LIVGI5 altered motifsRP11-89M16.1
812855493511rs6651252TC0.330.170.030.10BLD, PANC, LNG10 tissues21 tissues12 bound proteinsSP1,TCF42 hits135 hitsRP11-89M16.1


Query SNP: rs1728918 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
22741259611rs1728918AG0.950.710.730.73LIVLNGLNG,LIVHNF4APPAR,Pou3f2,XBP-11 hit6 hits8 hits2.9kb 5' of PPM1G


Query SNP: rs181359 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
222156538211rs140488AG0.120.330.480.20BLD8 altered motifs22 hitsUBE2L3intronic
222156611411rs131664GA0.120.340.480.20BLDGfi1,Pitx222 hitsUBE2L3intronic
222156661411rs131665AG0.120.330.480.20BLDBLD,PANC5 altered motifs2 hits23 hitsUBE2L3intronic
222156700511rs140489GA0.480.370.480.204 tissues5 tissuesCEBPB,PU16 altered motifs24 hitsUBE2L3intronic
222156739711rs140490GT0.480.360.480.2017 tissues6 tissuesWHIP7 altered motifs24 hitsUBE2L3intronic
222157277511rs140498GA0.120.330.480.20LNG17 tissues6 tissuesHDAC2,POL24H8,POL2BFoxp3,Mef24 hits23 hitsUBE2L3intronic
222157294211rs140499CT0.120.330.480.20LNG20 tissues4 tissuesPOL24H8,POL2BRXRA3 hits23 hitsUBE2L3intronic
222157435211rs181359GA0.120.330.480.204 tissues21 tissuesSKIN,BLD,BLDPOL2BPax-4,Pax-61 hit6 hits23 hitsUBE2L3intronic
222157462711rs181360TG0.120.330.480.20GI, LNG19 tissues14 tissuesPOL24H87 hits23 hitsUBE2L3intronic


Query SNP: rs13300218 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
913650166111rs11574906TA0.030.090.000.10SKIN, PANCBLDZBRK12 hits5 hitsNOTCH1intronic
913650518911rs13300218GA0.010.090.000.107 altered motifs7 hitsNOTCH1intronic


Query SNP: rs13333062 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
165088664811rs8053407GA0.190.110.080.1411 altered motifsRP11-883G14.1
165088767211rs59140851CA0.170.110.080.14BLDIPSC,BLDBHLHE40RP11-883G14.1
165088790311rs16949029GC0.170.110.080.14Nkx2RP11-883G14.1
165088820911rs1874494AG0.170.110.060.14NRSFNRSF,RXRA1 hitRP11-883G14.1
165088887511rs13333062GA0.180.110.060.14TBX51 hitRP11-883G14.1


Query SNP: rs2266959 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
222156652811rs59391722GC0.040.310.400.19BLDPANC,BLDELF1,Ets,Sin3Ak-2020 hitsUBE2L3intronic
222156816711rs11089620CG0.040.320.390.1924 tissues32 tissuesSMC3,YY115 altered motifs20 hitsUBE2L3intronic
222156861511rs2266959GT0.040.310.390.1923 tissuesSPLN23 tissues4 bound proteins4 altered motifs1 hit530 hits21 hitsUBE2L3intronic
222157430811rs2266961CG0.050.310.400.1921 tissues5 tissuesPOL2BERalpha-a2 hits21 hitsUBE2L3intronic
222157580411rs73166619CT0.050.310.400.19BLD, PLCNT, GIESC,BLDFoxa20 hitsUBE2L3intronic
222157648811rs5754166CT0.050.320.390.19BLDMef220 hitsUBE2L3intronic


Query SNP: rs34592089 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
410200576611rs34592089GA0.000.030.000.06BLDRP11-498M5.2intronic


Query SNP: rs3810936 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
911479060511rs3810936TC0.890.720.520.685 tissuesESDR,ESDR,MUSPou2f21 hit1 hit1 hitTNFSF15synonymous


Query SNP: rs516246 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
194870285111rs679574CG0.490.380.010.43SPLNRREB-131 hitsFUT2intronic
194870288811rs516316GC0.490.380.010.43SPLNMyc,Nrf11 hit30 hitsFUT2intronic
194870291511rs516246CT0.490.380.010.43SPLN8 altered motifs3 hits178 hits31 hitsFUT2intronic
194870320511rs681343CT0.490.380.010.431 hit31 hitsFUT2synonymous
194870341711rs601338GA0.490.380.010.43HDAC2,HNF42 hits31 hitsFUT2nonsense


Query SNP: rs2066847 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
165072986711rs2066847GGC0.010.010.000.014 altered motifs3 hitsNOD2frameshift


Query SNP: rs6679677 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
111376118611rs6679677CA0.000.040.000.10BLDESDR, BLDE2F,Irf,NF-Y7 hits126 hits1 hit645bp 3' of RSBN1


Query SNP: rs71559680 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
62143049611rs71559680CTAGCCATHmbox1,TATA75kb 3' of RP1-135L22.1


Query SNP: rs7517810 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
117288432011rs7517810CT0.230.490.890.249 tissuesMUS1 hit146 hits1 hitRP1-15D23.2


Query SNP: rs9891119 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
174235596211rs9891119AC0.420.270.380.38BLD11 tissuesBLDGATA,Mef2,NR4A2 hits1 hit5 hitsSTAT3intronic


Query SNP: rs4809330 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
206371823411rs4809330AG0.940.750.360.70Pitx31 hit6 hits10 hitsZGPATintronic


Query SNP: rs921720 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
812552242911rs921720AG0.130.530.410.638 tissues6 tissues2 hits260 hitsRP11-136O12.2
812552389511rs10956252CG0.130.530.410.63HRTRP11-136O12.2
812552493711rs55867617CG0.130.530.410.6310 tissuesCRVXCEBPB,JUND6 altered motifsRP11-136O12.2
812552532811rs4871611GA0.130.530.360.63CRVX11 tissues11 tissues4 bound proteinsGR1 hitRP11-136O12.2


Query SNP: rs2836878 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
213909358611rs4817986GT0.100.320.180.27BLD6 tissuesLNGNkx6-1,Zfp1871 hit3 hits64kb 5' of AF064858.10
213909360811rs2836878GA0.120.320.180.27BLD6 tissuesBLD,LNGGR4 hits1268 hits3 hits64kb 5' of AF064858.10
213909397511rs4817987CT0.120.320.180.27BLD7 tissuesIk-23 hits65kb 5' of AF064858.10


Query SNP: rs13204742 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
612792462011rs13204742GT0.020.060.000.144 tissues8 tissues4 altered motifs1 hit141 hits1 hitRP11-73O6.4


Query SNP: rs1250550 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
107930056011rs1250550CA0.090.270.480.3010 tissuesMUS,BRN3 hits2 hitsZMIZ1intronic


Query SNP: rs2488389 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
119764255211rs16841842CA0.050.200.190.19Maf,Sox1 hitDENND1Bintronic
119766201111rs2488389GA0.330.220.190.198 altered motifs1 hit253 hits1 hitDENND1Bintronic


Query SNP: rs1363907 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
5968956681-1rs2549783TC0.640.680.680.59BLD, HRTBLDMyc,NF-kappaB105 hitsERAP2intronic
5968988291-1rs3849749AT0.640.690.730.59Smad4105 hitsERAP2intronic
5969007081-1rs251340AG0.640.680.720.59Pax-5102 hitsERAP2intronic
5969042231-1rs2548530TC0.640.680.730.59ESDR, FAT, BLD5 tissues9 altered motifs104 hitsERAP2intronic
5969088451-1rs2549794CT0.640.680.730.59LIV, ADRL, MUS1 hit7 hits116 hitsERAP2intronic
5969117301-1rs2910793GA0.640.680.730.59MUSHNF1,NRSF,TCF12102 hitsERAP2intronic
5969139441-1rs2859491TC0.640.690.720.59102 hitsERAP2intronic
59691597111rs2351011CA0.360.320.280.41Crx,Pitx2,SREBP102 hitsERAP2intronic
59691637511rs2927609GA0.360.320.280.41Sox105 hitsERAP2intronic
59691709911rs1363907GA0.360.310.280.41Pax-4,Sox1 hit177 hits111 hitsERAP2intronic
59691729411rs1820148AG0.360.320.280.418 altered motifs101 hitsERAP2intronic
59691740011rs1363908TC0.360.320.280.417 altered motifs102 hitsERAP2intronic


Query SNP: rs1893217 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
181280814111rs8096138CG0.040.070.160.16GR,Osr,TATA10 hitsPTPN2intronic
181280846711rs35153695ACA0.040.070.160.1617 altered motifs10 hitsPTPN2intronic
181280934111rs1893217AG0.050.070.160.16ESCRXR::LXR,RXRA5 hits1095 hits10 hitsPTPN2intronic


Query SNP: rs2284553 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
213340438911rs2284553AG0.940.660.610.6124 tissues40 tissuesPOL2,POL24H81 hit222 hits13 hitsIFNGR2intronic


Query SNP: rs6503695 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
174234751511rs6503695TC0.370.220.360.3418 tissues16 tissues5 bound proteins4 hitsSTAT3intronic


Query SNP: rs10495903 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
24357977911rs10495903CT0.170.100.010.11RFX5,SMC32 hits230 hits1 hitTHADAintronic


Query SNP: rs1292053 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
175988617611rs1292053AG0.530.440.600.42NRSF,Pbx-1,Tgif11 hit380 hits5 hitsTUBD1missense


Query SNP: rs2838519 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
214419514011rs2838519GA0.700.420.410.6010 tissues10 tissuesRREB-12 hits3 hits6.1kb 5' of AP001057.1


Query SNP: rs3024505 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
120676655911rs3024505GA0.040.100.020.17BLD, BONE15 tissues34 tissues22 bound proteinsMZF1::1-4,Pax-47 hits257 hits1kb 3' of IL10
120676906811rs3024495CT0.020.100.020.17BLD, GI11 tissuesBLD,SKINIL10intronic


Query SNP: rs423674 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
161127790211rs441349CT0.010.080.050.17LIV2 hits12 hitsRMI2
161127834511rs396263AG0.020.080.050.17LIV5 altered motifs10 hitsRMI2
161127879911rs443299GA0.190.090.050.17BLD, LIVLIV4 altered motifs11 hitsRMI2
161127946311rs529866CT0.190.090.050.17LIV4 tissues4 tissuesPOL2DBP,GR,Pax-21 hit179 hits13 hitsRMI2
161127954811rs423674GT0.190.090.050.17LIVBLD, LIV, GILNG,LIVHEY1,POL22 hits13 hitsRMI2


Query SNP: rs6863411 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
514211404911rs4912804TC0.780.650.660.61ESC, BLD, MUS9 altered motifs4 hitsNDFIP1intronic
514211412011rs4912805AG0.790.650.660.61ESC, BLD, MUS4 altered motifs5 hitsNDFIP1intronic
514211515411rs13184323TG0.790.650.660.616 tissuesDMRT1,HDAC25 hitsNDFIP1intronic
514211557411rs13188700TC0.770.650.650.618 tissues12 altered motifs5 hitsNDFIP1intronic
514211615011rs10875596TC0.790.650.650.6115 tissuesSTAT3,ZNF263GATA,Irf9 hitsNDFIP1intronic
514211689911rs7712237TC0.780.650.650.61BLD6 tissuesMef25 hitsNDFIP1intronic
514211808511rs9324866AG0.780.650.650.61GI11 tissuesLNG8 hitsNDFIP1intronic
514211906711rs1036209TA0.780.650.650.61BLDFox,HNF15 hitsNDFIP1intronic
514211947611rs1036207AG0.780.650.650.61BLDCdx25 hitsNDFIP1intronic
514212087111rs11749731AC0.780.650.660.61BLD12 tissuesBLD12 altered motifs1 hit8 hitsNDFIP1intronic
514212113911rs11750521TC0.790.650.660.61BLD7 tissues24 altered motifs5 hitsNDFIP1intronic
514212194311rs1835966CT0.790.650.650.619 tissuesZbtb38 hitsNDFIP1intronic
514212220611rs1835965GA0.790.650.650.618 tissuesSKINPax-6,ZNF2635 hitsNDFIP1intronic
514212247011rs10463348GT0.790.650.650.61Cdx,Foxa,SRF5 hitsNDFIP1intronic
514212427411rs6877864AG0.790.650.650.616 tissuesSKINGATA15 altered motifs5 hitsNDFIP1intronic
514212430511rs6882226TA0.790.650.650.616 tissuesSKINGATA17 altered motifs5 hitsNDFIP1intronic
514212542611rs6883827AG0.790.650.660.61BLDEvi-1,Rad215 hitsNDFIP1intronic
514212589711rs4912623TA0.780.650.660.61BLDFoxk1,Pou2f2,Sox6 hitsNDFIP1intronic
514212705011rs7737631TG0.780.650.670.61BLD, LIV4 hitsNDFIP1intronic
514212734611rs6874308CT0.790.650.650.614 tissuesGI6 altered motifs5 hitsNDFIP1intronic
514212892311rs11739961TG0.790.650.650.61BLD15 tissuesBLD,BLD,BLDMxi1,RFX58 hitsNDFIP1intronic
514212986811rs2338821AG0.790.650.660.61FAT, SKINBLD, LIV, MUSYY16 hitsNDFIP1intronic
514212997211rs4391200AG0.790.650.660.61FAT, SKINBLD, LIV, MUSZfp1875 hitsNDFIP1intronic
514213003211rs10062349GA0.790.650.660.61DMRT7,Mef2,Pax-45 hitsNDFIP1intronic
514213042011rs6860138GA0.790.650.660.61FATBLD, FAT, LIVBLD4 altered motifs8 hitsNDFIP1intronic
514213088311rs6580228CT0.790.650.660.61BLDSox5 hitsNDFIP1intronic
514213118911rs6580229AG0.790.650.660.61BLDNr2f2,Pax-25 hitsNDFIP1intronic
514213363911rs6863411AT0.790.650.660.61BLDBLD, LIV, GIGIFOXA1,FOXA2,HNF4ACrx,Gfi11 hit141 hits13 hitsNDFIP1intronic
514213412611rs2043280CG0.790.650.660.61BLDBLD, LIV, GIGcm1,Mef28 hitsNDFIP1intronic
514213428911rs7709361TC0.790.650.660.61BLDBLD, LIVRXRA1 hit8 hitsNDFIP1intronic
514213440111rs7723666CT0.790.650.660.61BLDBLD, LIVMaf,Pou1f18 hitsNDFIP1intronic
514213599911rs7733850CT0.790.650.650.61BLDFoxp1,GATA,Nanog8 hitsNDFIP1intronic


Query SNP: rs212388 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
615906940411rs212388CT0.320.450.370.58ESC, IPSC, BLDIPSC, BLD, THYM5 tissuesMAXIk-1,MZF1::1-4,STAT3 hits379 hits1 hit4.1kb 5' of RP1-111C20.3


Query SNP: rs3024505 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
120676655911rs3024505GA0.040.100.020.17BLD, BONE15 tissues34 tissues22 bound proteinsMZF1::1-4,Pax-47 hits257 hits1kb 3' of IL10
120676906811rs3024495CT0.020.100.020.17BLD, GI11 tissuesBLD,SKINIL10intronic


Query SNP: rs11209026 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
16723423211rs79755370CA0.010.060.000.0629 tissues4 bound proteinsIL23Rintronic
16724027511rs11209026GA0.010.060.000.06GR15 hits3 hitsIL23Rmissense
16724200711rs11581607GA0.010.060.000.064 altered motifsIL23Rintronic
16724766311rs113935720TC0.010.060.000.064 altered motifsIL23Rintronic


Query SNP: rs34779708 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
103515666011rs1545757AT0.160.330.310.37HRT, BLD6 altered motifs11 hitsCREMintronic
103515793711rs12784482AG0.160.330.310.37ESDR4 altered motifs11 hitsCREMintronic
103516030011rs34630580AG0.210.330.310.37BLD11 hitsCREMintronic
103516167911rs12782948GA0.330.360.310.378 altered motifs11 hitsCREMintronic
103516321311rs35126129GA0.210.330.310.376 altered motifs11 hitsCREMintronic
103516604811rs10827493CT0.330.360.310.37Dmbx1,Pou5f1,Sox11 hitsCREMintronic
103516640811rs35847586AG0.160.330.310.376 altered motifs11 hitsCREMintronic
103516728711rs17499811GA0.170.330.310.37GR11 hitsCREMintronic
103517104811rs10508816GA0.480.370.320.37Pou2f21 hit11 hitsCREMintronic
103517201111rs35146199TC0.160.330.310.377 tissuesIPSC4 altered motifs11 hitsCREMintronic
103517211011rs9665538TC0.360.360.310.3710 tissuesFoxp1,PLZF,Sox11 hitsCREMintronic
103517725711rs34779708TG0.310.350.320.37HRTIk-1,STAT11 hitsCREMintronic
103517874311rs12260130CT0.340.360.310.37HRTESCBRN,HRT,LNGHand111 hitsCREMintronic
103518322211rs4934538TC0.160.330.310.37BRN, LNGLNGTCF41 hit11 hitsCREMintronic
103518327111rs4934539AG0.330.360.310.37BRN, LNGLNG8 altered motifs11 hitsCREMintronic
103518410711rs1478463GA0.330.360.310.37BLDDbx1,Pax-4,Zfp10511 hitsCREMintronic
103518499911rs12777517TG0.210.330.310.37BLDFAT, BLD, LIVBLD9 altered motifs11 hitsCREMintronic
10351854931-1rs2505639AG0.370.620.680.634 tissuesADRL,HRT,BLDBCL11A20 altered motifs11 hitsCREMintronic
103518577111rs4934540TC0.330.350.310.375 tissues5 tissues4 bound proteins4 hits11 hitsCREMintronic


Query SNP: rs6856616 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
43832341511rs6856616TC0.320.160.240.05BLD8 tissuesCRVX,BLD9 bound proteins4 altered motifs1 hit36kb 3' of RP11-600L4.1


Query SNP: rs10210302 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
223324849111rs11680089GC0.280.390.330.53BRST, BLD, SKIN7 altered motifs8 hitsATG16L1
223324861211rs11680130GA0.250.380.330.53BLD, SKIN8 hitsATG16L1
223324904211rs56049444CT0.170.370.330.53BLDBLD, THYM5 tissues8 hitsATG16L1
223324908711rs55835501CT0.250.390.330.53BLDBLD, THYM7 tissuesAIRE7 hitsATG16L1
223324909511rs56227616TC0.200.380.330.53BLDBLD, THYM8 tissuesRFX57 hitsATG16L1
223325019311rs10210302CT0.250.380.330.53VASHlx11 hit2 hits9 hitsATG16L1
223325169911rs2289477TG0.260.390.330.5324 tissues53 tissues33 bound proteinsAP-2,Pbx3,Znf1437 hitsATG16L15'-UTR
223325280211rs6752107GA0.260.390.330.5321 tissues7 tissues1 hit10 hitsATG16L1intronic
223325293711rs6738490TC0.260.390.330.5321 tissues7 tissuesBLDGATA18 hitsATG16L1intronic
223325312311rs6431654CT0.260.390.330.5319 tissues12 tissuesBLD,LNG,BLDGATA1Nanog1 hit10 hitsATG16L1intronic
223325350711rs6745825AG0.260.390.330.53BLD, LIV19 tissuesGI6 altered motifs8 hitsATG16L1intronic
223325503711rs6705964GC0.250.390.330.53BLD6 tissues4 altered motifs9 hitsATG16L1intronic
223325858811rs6431660AG0.170.360.330.53BLD8 altered motifs11 hitsATG16L1intronic
223325877511rs6431661CT0.210.360.330.53BLD, STRMAIRE8 hitsATG16L1intronic
223325923511rs34123137TA0.200.360.330.53BLD, STRM, GI5 altered motifs8 hitsATG16L1intronic
223326014411rs35300242GA0.200.360.330.534 tissuesBLD15 altered motifs8 hitsATG16L1intronic
223326117611rs10164737CT0.100.360.330.539 hitsATG16L1intronic


Query SNP: rs6556412 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
515934999311rs7725339GT0.410.340.440.34BLDFoxp3AC008697.1intronic
515936037711rs6556412GA0.400.340.440.34BLD1 hitAC008697.1intronic
515936312511rs56276983GTG0.410.480.490.34BLD6 altered motifs290bp 3' of AC008697.1
515937071911rs12515766CG0.400.480.490.344 altered motifs7.9kb 3' of AC008697.1
515937106711rs6898844AG0.400.480.490.34Gfi1,Gfi1b,Pou3f38.2kb 3' of AC008697.1
515937417911rs6864071GA0.390.340.440.34Hoxa911kb 3' of AC008697.1
515937543511rs4413517CT0.510.340.440.349 altered motifs13kb 3' of AC008697.1
515937717411rs4921224CT0.500.340.440.34NRSF14kb 3' of AC008697.1
515937792011rs4379175GT0.500.340.430.34GI15kb 3' of AC008697.1


Query SNP: rs13333062 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
165088664811rs8053407GA0.190.110.080.1411 altered motifsRP11-883G14.1
165088767211rs59140851CA0.170.110.080.14BLDIPSC,BLDBHLHE40RP11-883G14.1
165088790311rs16949029GC0.170.110.080.14Nkx2RP11-883G14.1
165088820911rs1874494AG0.170.110.060.14NRSFNRSF,RXRA1 hitRP11-883G14.1
165088887511rs13333062GA0.180.110.060.14TBX51 hitRP11-883G14.1


Query SNP: rs2361755 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
168597565511rs2885363GC0.160.060.010.08GI, LIV8 tissues7 tissuesCTCFAP-1,Elf51 hit53kb 3' of IRF8
168597608011rs2361755GC0.150.060.010.08BLD, LIV, GIGI,LIVZec1 hit1 hit53kb 3' of IRF8


Query SNP: rs7608910 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
26097750611rs7608697AC0.680.320.050.37BLDBLD, SKINSKINBCL11A,IRF45 altered motifs17 hitsPUS10intronic
26097755311rs7596362TC0.910.330.050.37BLDBLD, SKINSKINIRF44 altered motifs17 hitsPUS10intronic
26097772111rs7608910AG0.430.300.050.37BLDLNG, BLDSKIN2 hits405 hits15 hitsPUS10intronic
26097778211rs4560096TG0.430.300.050.37BLDLNG, BLDAP-4,Sin3Ak-2013 hitsPUS10intronic


Query SNP: rs2076756 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
165071825311rs62029864GA0.050.150.000.22FAT, SKIN6 tissues6 tissuesGATA2GR,Irf,Nkx21 hitNOD2intronic
165072297011rs2076756AG0.050.150.000.22BLDMef2,Nanog6 hits1 hit3 hitsNOD2intronic
165072493811rs749910GA0.050.150.000.22BLDLNGHEY1,TATA1 hitNOD2intronic


Query SNP: rs4256159 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
31872381111rs34748598TC0.030.100.140.15BLDBLD, THYM, GICEBPD,DMRT7AC105750.1
31872401311rs35709387TA0.030.100.140.15BLDBLD, THYM, GIBbx,CEBPG,TATAAC105750.1
31872411411rs34563045GT0.030.100.140.15BLD4 tissuesMef2,Smad3AC105750.1
31872448611rs11713774TC0.040.100.140.15BLD4 tissues8 altered motifs1 hitAC105750.1
31872466311rs34834433TTCAA0.040.110.140.15BLDBLD, SKIN, THYMBLD,BLDEBF,HNF4AC105750.1
31872490511rs11718328AG0.040.100.140.15BLD4 tissuesBLD6 altered motifsAC105750.1
31872556411rs34599998CT0.040.100.140.15BLDBLD, SKIN, THYMBLD,BLD,BLDCTCF,DEC,RXRAAC105750.1
31872587611rs4257569CT0.040.100.140.15BLD5 tissues9 tissuesERALPHA_A4 altered motifsAC105750.1
31872591211rs4256159CT0.040.100.140.15BLD6 tissues10 tissuesERALPHA_A,CEBPB1 hit544 hitsAC105750.1
31872908711rs4128758CG0.040.100.140.15BLD4 altered motifsAC105750.1
31872909311rs4128757AT0.040.100.140.15BLD4 altered motifsAC105750.1
31872930211rs4128756GT0.040.100.140.15BLD4 altered motifsAC105750.1
31873045211rs66486067TC0.040.100.140.15BLDRREB-1,SREBPAC105750.1


Query SNP: rs8005161 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
148799854311rs10220572CG0.410.170.190.09GI,BLD,BLDHNF4,Hdx1 hit2.1kb 5' of U6
148800079711rs8006352GT0.410.170.190.09BLD6 altered motifs1 hit4.3kb 5' of GPR65
148800122811rs8007233GA0.410.170.190.09BLDDMRT11 hit3.9kb 5' of GPR65
148800403711rs73312867AC0.180.120.190.09BLDBLDBLD9 altered motifs1.1kb 5' of GPR65
148800479711rs28667727TC0.410.170.190.09BLD, GIBLD, THYMBLD,BLD5 altered motifs1 hit326bp 5' of GPR65
148800625111rs8005161CT0.410.170.190.096 tissuesBLD, GI9 tissues4 bound proteins2 hits119 hits3 hitsGPR65intronic
148800943511rs7216089012-merT0.410.170.190.09BLDBLD, THYMBLDLUN-1,Pou3f11 hitGPR65intronic
148801153811rs3742704AC0.180.130.190.09BLD4 tissuesPax-41 hit2 hitsRP11-300J18.2missense
148801248311rs12434101TC0.200.130.190.09BLDLNGRP11-300J18.23'-UTR
148802247711rs11624293TC0.200.130.190.09HRT, LIVPRDM1,Zbtb32 hitsRP11-300J18.1


Query SNP: rs10758669 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
9498160211rs10758669CA0.870.590.670.64MUSLUN-1,Spz15 hits338 hits1 hit3.4kb 5' of JAK2


Query SNP: rs1456896 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
75026486511rs1456896CT0.580.720.420.68BLDBLD, THYM5 tissuesHNF42 hits321 hits9.9kb 3' of AC020743.4


Query SNP: rs2241880 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
223327320211rs2289474CT0.250.380.330.53BLD10 hitsATG16L1intronic
223327359411rs2289472CT0.250.380.330.53BLD4 altered motifs1 hit10 hitsATG16L1intronic
223327472211rs2241880AG0.250.380.330.53NRSF3 hits4 hits10 hitsATG16L1missense
223327482211rs2241879GA0.250.380.330.53RFX5,Spz1,ZID10 hitsATG16L1intronic
223327507211rs2241878TC0.250.380.330.5314 altered motifs10 hitsATG16L1intronic


Query SNP: rs34804116 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
57324402311rs34804116CA0.510.340.160.37NF-IRP11-60A8.1


Query SNP: rs3764147 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
134388378911rs3764147AG0.330.370.320.24FAT6 tissues5 altered motifs4 hits321 hits17 hitsLACC1missense
134388610611rs1932990CT0.330.370.320.249 altered motifs17 hitsLACC1intronic


Query SNP: rs6716753 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
223023241411rs6716753TC0.200.150.000.19BLD, BRNCEBPB1 hit105 hits35 hitsAC009950.1intronic
223023332511rs6436922AG0.210.170.000.19BLDPLZF,Pax-4,TATA35 hitsAC009950.1intronic
223023376311rs1946410CT0.200.150.000.19BLDPLZF,TATA32 hitsAC009950.1intronic


Query SNP: rs113653754 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
11rs11365375419 hits


Query SNP: rs3091315 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
173426664611rs3091315AG0.410.470.620.32FAT, BLD5 altered motifs1 hit363 hits3.6kb 5' of CCL7
173426695511rs3091316GA0.260.460.620.32BLDGmeb1,Mef2,Pou2f22 hits3.3kb 5' of CCL7


Query SNP: rs3180018 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
11rs31800181 hit


Query SNP: rs3764147 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
134388378911rs3764147AG0.330.370.320.24FAT6 tissues5 altered motifs4 hits321 hits17 hitsLACC1missense
134388610611rs1932990CT0.330.370.320.249 altered motifs17 hitsLACC1intronic


Query SNP: rs10495903 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
24357977911rs10495903CT0.170.100.010.11RFX5,SMC32 hits230 hits1 hitTHADAintronic


Query SNP: rs11879191 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
191040223511rs11879191GA0.170.180.460.1821 tissues11 tissues21 tissuesRXRA,Spz1,ZBTB331 hit157 hits15 hitsCDC37intronic


Query SNP: rs6062496 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
206369774611rs6062496GA0.440.460.120.585 tissues18 tissues10 tissuesPOL25 altered motifs3 hitsRTEL1intronic


Query SNP: rs7423615 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
223024941611rs9989899GA0.160.140.000.184 altered motifs1 hit35 hitsSP140intronic
223025027511rs34855578CG0.150.140.000.184 altered motifs32 hitsSP140intronic
223025028011rs35857956CT0.150.140.000.1832 hitsSP140intronic
223025073911rs9989735GC0.120.130.000.18POL24H820 altered motifs33 hitsSP140intronic
223025091511rs9989835AT0.160.140.000.18ZBRK135 hitsSP140intronic
223025126111rs13385151CT0.120.130.000.18Sp10036 hitsSP140intronic
223025170211rs10498246TA0.160.140.000.18Hoxa13,RXRA35 hitsSP140intronic
223025215911rs7423615CT0.120.130.000.18BLDGATA1 hit35 hitsSP140intronic
223025519911rs28693552GC0.130.140.000.18BLDBLD, THYM21 altered motifs33 hitsSP140intronic


Query SNP: rs10045431 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
515938752511rs10045431AC0.920.790.900.724 altered motifs2 hits3 hits1 hit25kb 3' of AC008697.1
515938756911rs10046001TG0.920.790.900.7210 altered motifs25kb 3' of AC008697.1


Query SNP: rs2006996 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
911483035811rs2006996TC0.050.140.360.045 tissuesSKINPou5f11 hit1 hit24kb 5' of TNFSF15


Query SNP: rs2227551 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
107390943211rs2227551GT0.590.550.440.737 tissues18 tissues40 tissues10 bound proteins15 altered motifs611 hits8 hitsPLAU


Query SNP: rs5763767 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
223009789311rs5763767GA0.710.560.310.45BLDBCL,GATA,NRSF175 hits8 hitsHORMAD2intronic
223009838211rs2412971GA0.710.560.310.45BLDBRCA1,Brachyury,NRSF3 hits2 hits8 hitsHORMAD2intronic
223011626911rs4823073GA0.710.560.320.45LNG11 tissues4 tissues4 hitsHORMAD2intronic
223011648911rs4823074GA0.710.560.320.45LNG11 tissues19 tissues5 altered motifs8 hitsHORMAD2intronic


Query SNP: rs7927997 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
117659021111rs7926914GT0.290.260.190.3610 tissues16 altered motifs35kb 3' of RP11-672A2.6
117659027211rs7927894CT0.280.260.200.3610 tissuesPax-42 hits2 hits35kb 3' of RP11-672A2.6
117659033111rs7927997CT0.240.260.200.3610 tissuesTHYM4 altered motifs1 hit35kb 3' of RP11-672A2.6


Query SNP: rs12722515 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
10603839111rs41294713TC0.050.080.120.14BLDBLD, THYM4 tissuesGATA210 altered motifsIL2RAintronic
10603926711rs12722515CA0.070.080.120.14BLD1 hit333 hitsIL2RAintronic
10604835911rs791590AT0.050.080.130.14BLD, THYMBLDBbx,CEBPB,Hbp1IL2RAintronic
10605024711rs2246031CT0.060.080.130.14BLD, GI11 tissues11 tissuesBATF,NFKBTATAIL2RAintronic


Query SNP: rs12720356 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
191035929911rs12720356AC0.010.050.000.10PLCNT2 hits5 hits8 hitsTYK2missense


Query SNP: rs2241880 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
223327320211rs2289474CT0.250.380.330.53BLD10 hitsATG16L1intronic
223327359411rs2289472CT0.250.380.330.53BLD4 altered motifs1 hit10 hitsATG16L1intronic
223327472211rs2241880AG0.250.380.330.53NRSF3 hits4 hits10 hitsATG16L1missense
223327482211rs2241879GA0.250.380.330.53RFX5,Spz1,ZID10 hitsATG16L1intronic
223327507211rs2241878TC0.250.380.330.5314 altered motifs10 hitsATG16L1intronic


Query SNP: rs2301436 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
616702450011rs2301436CT0.330.390.370.44Gfi12 hits1 hit14 hitsFGFR1OPintronic
616702664011rs2282861CT0.330.400.470.44BRCA1,Homez13 hitsFGFR1OPintronic
616702675611rs2282860TC0.330.400.470.44IPSCGR,Myc13 hitsFGFR1OPintronic


Query SNP: rs2930047 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
51069541411rs2930047TC0.790.480.750.39BRN, GI18 tissues7 tissues5 bound proteins1 hit648 hits18 hitsDAPintronic


Query SNP: rs3197999 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
34968409911rs3197999GA0.240.220.060.315 tissuesOVRYSMC3,TCF12,ZBRK16 hits467 hits59 hitsMST1missense


Query SNP: rs13126505 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
410194414711rs13126505GA0.000.030.000.06ESC, ESDR1 hit528 hitsBANK1intronic


Query SNP: rs1373692 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
54043108111rs1373692AC0.680.510.150.58BRST, BLD, GI1 hit111kb 3' of AC108105.1
54043156211rs1445001AG0.680.510.150.58GI, BLDPLCNTGATA3AP-2,EBF,Nkx2111kb 3' of AC108105.1
54043231011rs6861824AG0.680.510.150.58GI, BLD8 altered motifs112kb 3' of AC108105.1


Query SNP: rs17234657 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
54036035611rs11743463CA0.220.080.010.13BLD, SKINHP1-site-factor,NF-I,Pax-440kb 3' of AC108105.1
54036287211rs73082864AG0.220.080.010.13Nkx3,Pax-8,TATA42kb 3' of AC108105.1
54037505411rs146646093AAAAC0.220.080.010.13VASGR55kb 3' of AC108105.1
54037605711rs56244034AT0.220.080.010.13BLDNkx6-156kb 3' of AC108105.1
54037776411rs17227583TC0.220.080.010.13BLD, THYMTAL1,TATA57kb 3' of AC108105.1
54038395911rs895123CG0.220.080.010.13BLD15 tissues22 tissuesCJUN,P300,STAT3Mxi1,Myc64kb 3' of AC108105.1
54038918511rs1124233GA0.240.080.010.13BLD, THYM, GI4 altered motifs69kb 3' of AC108105.1
54039212411rs2371685AT0.220.080.010.13BLD, GIBbx,Bcl6b,Sox72kb 3' of AC108105.1
54039262611rs4613763TC0.220.080.010.13BLD, GIBAF155,SIX5,Znf1432 hits1 hit72kb 3' of AC108105.1
54039409911rs10512735GT0.220.080.010.13Nrf174kb 3' of AC108105.1
54039632311rs11749040GA0.230.080.010.13MUS, GIFoxk176kb 3' of AC108105.1
54039991811rs11738106TA0.220.080.010.136 tissues80kb 3' of AC108105.1
54040140711rs17234657TG0.220.080.010.1314 tissues15 tissuesMyc1 hit1 hit81kb 3' of AC108105.1
54040213111rs6879283TC0.220.080.010.1312 tissues20 tissues13 bound proteinsNkx282kb 3' of AC108105.1
54040309111rs1373694GA0.220.080.010.13BLD5 altered motifs83kb 3' of AC108105.1
54040688311rs6896243CT0.220.080.010.13BLD, LIV9 tissues11 tissuesPax-486kb 3' of AC108105.1


Query SNP: rs174537 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
116178445511rs174536AC0.040.550.410.368 tissuesLIVHEN1,ZBTB7A2 hits114 hits44 hitsC11orf9intronic
116178520811rs174537GT0.040.550.410.36ESDR, IPSC, SKINHNF42 hits705 hits44 hitsC11orf9intronic


Query SNP: rs2058660 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
210242685011rs35711445TAT0.900.570.580.79BLDBLD4 altered motifsIL18RAPintronic
210242856011rs11694658AG0.880.570.580.79BLDGmeb1,Hdx,ZBTB337 hits15 hitsIL18RAPintronic
210243042011rs2160232GA0.890.570.580.79BLDCIZ,YY17 hits15 hitsIL18RAPintronic
210243197711rs6713618AT0.900.570.580.79BLD4 altered motifs1 hit12 hitsIL18RAPintronic
210243200711rs6716784TG0.900.570.580.79BLDGfi1,Pou1f1,Sox7 hits15 hitsIL18RAPintronic
210243399811rs6543134TG0.900.570.580.79BLD6 altered motifs7 hits15 hitsAC007278.2intronic
210243446511rs2110735AG0.900.570.580.79BLD, MUSHic18 hits14 hitsAC007278.2intronic
210243574611rs2110734CT0.900.570.580.79BLD, GI4 altered motifs7 hits14 hitsIL18RAPintronic
210243653511rs6746271GC0.890.570.580.79BLD8 tissues19 tissues6 bound proteinsMaf7 hits14 hitsIL18RAPintronic
210243798911rs2058660GA0.890.570.580.79BLD7 altered motifs1 hit24 hits14 hitsIL18RAPintronic
210243834311rs2058658TC0.900.570.580.79BLD4 altered motifs7 hits14 hitsIL18RAPintronic
210243918411rs4851009GA0.900.570.580.797 tissues7 hits14 hitsIL18RAPintronic
210244062711rs11677107CA0.820.570.580.79BLD4 altered motifs1 hit12 hitsIL18RAPintronic
210244186811rs1558652GA0.820.570.580.79BLD5 altered motifs1 hit12 hitsIL18RAPintronic
210244356411rs1558650TA0.900.570.580.795 tissuesBLD,BLDCTCF7 hits14 hitsIL18RAPintronic
210244385311rs4851584AG0.830.570.580.79BLDDMRT11 hit12 hitsIL18RAPintronic
210244642011rs6734736CT0.900.570.580.793 hits14 hitsIL18RAPintronic
210244690911rs6708413GA0.900.570.580.796 altered motifs238 hits14 hitsIL18RAPintronic
210244944811rs6543137TG0.890.570.580.795 tissuesCTCF,SMC31 hit11 hitsIL18RAPintronic
210245232711rs7559479GA0.890.570.580.79GI4 altered motifs4 hits14 hitsIL18RAP3'-UTR
210245410811rs917997TC0.890.570.580.79BLD, GITAL12 hits14 hits14 hits1.5kb 3' of IL18RAP
210245452811rs2075185AG0.850.570.580.79GIERalpha-a1 hit12 hits2kb 3' of IL18RAP
210245701411rs4851587CT0.890.570.580.7910 altered motifs1 hit11 hits4.4kb 3' of IL18RAP
210245761911rs6757276TG0.890.570.580.791 hit11 hits5.1kb 3' of IL18RAP
210245803311rs4070554AG0.880.570.580.797 altered motifs3 hits14 hits5.5kb 3' of IL18RAP
210245910111rs6761825TC0.880.570.580.795 altered motifs3 hits14 hits6.5kb 3' of IL18RAP


Query SNP: rs4871611 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
812552242911rs921720AG0.130.530.410.638 tissues6 tissues2 hits260 hitsRP11-136O12.2
812552389511rs10956252CG0.130.530.410.63HRTRP11-136O12.2
812552493711rs55867617CG0.130.530.410.6310 tissuesCRVXCEBPB,JUND6 altered motifsRP11-136O12.2
812552532811rs4871611GA0.130.530.360.63CRVX11 tissues11 tissues4 bound proteinsGR1 hitRP11-136O12.2


Query SNP: rs6740462 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
26542723011rs268124CT0.410.770.820.729 tissuesMyc,Pax-41 hitSPRED2intronic
26544013811rs6740462CA0.910.800.820.72ESDR5 tissuesUSF14 altered motifs1 hit2207 hitsAC074391.1


Query SNP: rs7746082 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
610598715011rs6568421AG0.170.190.000.296 tissues5 tissuesNkx22 hits82kb 3' of 7SK
610598739411rs7746082GC0.010.180.000.295 tissuesMUS,MUS,SKINCphx,HNF41 hit272 hits83kb 3' of 7SK


Query SNP: rs10947261 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
63240545511rs10947261GT0.110.150.300.10Foxm1,Irf,TCF11::MafG1 hit7 hits5 hitsBTNL2intronic
63240553511rs10947262CT0.140.160.300.10PLZF1 hit4 hitsBTNL2intronic
63240559711rs10947263CT0.140.160.300.10Ncx,p3003 hitsBTNL2intronic
63240575211rs10947264AG0.140.160.300.109 altered motifs3 hitsBTNL2intronic
63240579911rs201879185TAT0.140.160.300.1015 altered motifs4 hitsBTNL2intronic
63240638311rs62404577AG0.140.160.300.10SKIN, HRTIPSCTBPBCL,Pax-53 hitsBTNL2intronic
63240641411rs77331864GA0.130.160.300.10SKIN, HRTIPSCTBP3 hitsBTNL2intronic
63240642811rs73400890GA0.140.160.300.10HRTTBP9 altered motifs3 hitsBTNL2intronic
63240648511rs73400892GA0.140.160.210.10HRTTBP4 altered motifs3 hitsBTNL2intronic


Query SNP: rs359457 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
517385280511rs359456TC0.670.470.380.58BLD5 tissuesMZF1::1-4,RXRA2 hits3 hits35kb 5' of CPEB4
517385283911rs359457CT0.670.470.380.58BLD5 tissuesEts1 hit8 hits3 hits35kb 5' of CPEB4


Query SNP: rs415890 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
616699069911rs932644AC0.240.430.390.48BLDBLDCTCF,TAL1,TCF1219 hitsRP1-167A14.2
616699094411rs10946198CT0.240.430.390.4817 hitsRP1-167A14.2
616699100411rs10946199GA0.230.420.390.484 altered motifs17 hitsRP1-167A14.2
616699111811rs1743440GA0.240.430.390.485 altered motifs17 hitsRP1-167A14.2
616699126311rs1794694TC0.240.430.390.48SETDB1,TCF12,Znf14317 hitsRP1-167A14.2
616699158511rs430097AG0.240.430.390.48BLD19 hitsRP1-167A14.2
616699173811rs409356TA0.240.430.390.486 tissues17 hitsRP1-167A14.2
616699194711rs447042CT0.240.430.390.4817 hitsRP1-167A14.2
616699206511rs402191TC0.240.430.390.4819 hitsRP1-167A14.2
616699218211rs1794693TC0.240.430.390.484 altered motifs17 hitsRP1-167A14.2
616699272111rs422780AG0.240.430.390.48ESCMAFK6 altered motifs19 hitsRP1-167A14.2
616699275011rs400176TC0.240.430.390.48ESCMAFK19 hitsRP1-167A14.2
616699283011rs422562AG0.240.430.390.48ESCMAFKCCNT2,GATA,TAL112 hits19 hitsRP1-167A14.2
616699305611rs416131GT0.240.430.390.487 altered motifs1 hit19 hitsRP1-167A14.2
616699314511rs415890GC0.240.430.390.481 hit3 hits19 hitsRP1-167A14.2
616699319311rs415842GA0.240.430.390.48Foxp119 hitsRP1-167A14.2
616699405611rs407515GC0.240.430.390.4819 hitsRP1-167A14.2
616699559911rs406095CT0.240.430.390.486 altered motifs17 hitsRP1-167A14.2
616699588611rs4710161TC0.250.430.380.484 altered motifs17 hitsRP1-167A14.2
616699607411rs388406AG0.240.420.390.48BLD, LIVBLD4 altered motifs17 hitsRP1-167A14.2
616699615011rs377232CA0.340.430.390.48BLD, LIVBLDGATA,Irf18 hitsRP1-167A14.2
616699628311rs387733AG0.240.420.390.48BLD, LIVBLDCEBPA,Maf,TATA3 hits17 hitsRP1-167A14.2
616699688111rs430145CT0.240.430.390.485 tissuesESDR6 altered motifs17 hitsRP1-167A14.2
616699739011rs376097AG0.240.420.380.487 tissues13 tissuesLIVMaf,Pax-417 hitsRP1-167A14.2
616699741911rs424185CT0.240.420.380.487 tissues13 tissuesLIVCEBPB,HNF4ANanog19 hitsRP1-167A14.2
616699752011rs400837TC0.240.430.390.4817 tissues16 tissues4 tissues4 bound proteinsFoxa,Foxp1,RREB-13 hits20 hitsRP1-167A14.2


Query SNP: rs6074022 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
204611155711rs6074022CT0.970.730.580.74FAT, BLD, SKIN5 tissues17 tissues6 bound proteinsCHD2,Nrf-22 hits1257 hits10 hits6.7kb 5' of CD40


Query SNP: rs7517847 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
16721598611rs7517847TG0.200.560.450.434 altered motifs2 hits3 hitsIL23Rintronic


Query SNP: rs10051722 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
513076838311rs10051722AC0.370.430.390.32Foxd3,Foxp1287 hits382kb 5' of RNU7-53P


Query SNP: rs10065637 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
55614102411rs6873385TA0.200.150.020.234 tissuesANKRD55intronic
55614302411rs10065637CT0.030.140.020.234 tissuesEBF1,NFKB,PU1Maf,Pou5f11 hit104 hits3 hitsANKRD55intronic


Query SNP: rs12663356 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
62143049711rs12663356TC0.560.520.340.53AIRE,Hmbox1,TATA1 hit342 hits75kb 3' of RP1-135L22.1


Query SNP: rs6908425 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
62072850011rs6908425TC0.770.790.790.78ESC, IPSC4 altered motifs2 hitsCDKAL1intronic


Query SNP: rs72727394 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
153855482111rs72727394CT0.080.220.110.19BLD6 tissuesBLD,BLD,BLDMxi1,Myc,RFX527 hitsRASGRP1intronic


Query SNP: rs8005161 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
148799854311rs10220572CG0.410.170.190.09GI,BLD,BLDHNF4,Hdx1 hit2.1kb 5' of U6
148800079711rs8006352GT0.410.170.190.09BLD6 altered motifs1 hit4.3kb 5' of GPR65
148800122811rs8007233GA0.410.170.190.09BLDDMRT11 hit3.9kb 5' of GPR65
148800403711rs73312867AC0.180.120.190.09BLDBLDBLD9 altered motifs1.1kb 5' of GPR65
148800479711rs28667727TC0.410.170.190.09BLD, GIBLD, THYMBLD,BLD5 altered motifs1 hit326bp 5' of GPR65
148800625111rs8005161CT0.410.170.190.096 tissuesBLD, GI9 tissues4 bound proteins2 hits119 hits3 hitsGPR65intronic
148800943511rs7216089012-merT0.410.170.190.09BLDBLD, THYMBLDLUN-1,Pou3f11 hitGPR65intronic
148801153811rs3742704AC0.180.130.190.09BLD4 tissuesPax-41 hit2 hitsRP11-300J18.2missense
148801248311rs12434101TC0.200.130.190.09BLDLNGRP11-300J18.23'-UTR
148802247711rs11624293TC0.200.130.190.09HRT, LIVPRDM1,Zbtb32 hitsRP11-300J18.1


Query SNP: rs9271366 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
63261907711rs9271366GA0.830.920.840.87Nanog6 hits122 hits261 hits9.1kb 5' of HLA-DQA1


Query SNP: rs11805303 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
16720983311rs11805303CT0.290.190.510.30BLDPANCBcl6b,ELF11 hit1 hitIL23Rintronic


Query SNP: rs2256609 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
222157072811rs2256609AG0.040.310.400.19FAT, BLD19 tissuesBLD,BLD4 altered motifs19 hitsUBE2L3intronic


Query SNP: rs7702331 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
57324577111rs6452898AC0.500.340.160.37ESDR, ESCGATA,Pbx-1RP11-60A8.1
57324586011rs6452899GA0.500.330.160.37ESDR, ESC, IPSC5 altered motifsRP11-60A8.1
57324622311rs12513457CA0.480.340.160.379 tissues6 tissues9 tissuesNRF1Irf,Klf7,Smad3RP11-60A8.1
57324722911rs9654420AG0.490.340.160.37ESDR,VASHNF4RP11-60A8.1
57324738611rs9654421GT0.490.340.160.37RP11-60A8.1
57324856311rs9654415TC0.570.350.160.37BCL,E2A,Hic1RP11-60A8.1
57325008211rs7341037TC0.540.350.160.37GR,Ik-2,SIX5RP11-60A8.1
57325530711rs7702331AG0.540.340.160.37FAT, SKINAP-1,DEC2 hits1 hitRP11-60A8.1


Query SNP: rs281379 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
194871101711rs281379GA0.220.330.010.45ADRL,MUSBach1,Pax-2,Smad32 hits3 hits25 hits2kb 3' of MAMSTR


Query SNP: rs6863411 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
514211404911rs4912804TC0.780.650.660.61ESC, BLD, MUS9 altered motifs4 hitsNDFIP1intronic
514211412011rs4912805AG0.790.650.660.61ESC, BLD, MUS4 altered motifs5 hitsNDFIP1intronic
514211515411rs13184323TG0.790.650.660.616 tissuesDMRT1,HDAC25 hitsNDFIP1intronic
514211557411rs13188700TC0.770.650.650.618 tissues12 altered motifs5 hitsNDFIP1intronic
514211615011rs10875596TC0.790.650.650.6115 tissuesSTAT3,ZNF263GATA,Irf9 hitsNDFIP1intronic
514211689911rs7712237TC0.780.650.650.61BLD6 tissuesMef25 hitsNDFIP1intronic
514211808511rs9324866AG0.780.650.650.61GI11 tissuesLNG8 hitsNDFIP1intronic
514211906711rs1036209TA0.780.650.650.61BLDFox,HNF15 hitsNDFIP1intronic
514211947611rs1036207AG0.780.650.650.61BLDCdx25 hitsNDFIP1intronic
514212087111rs11749731AC0.780.650.660.61BLD12 tissuesBLD12 altered motifs1 hit8 hitsNDFIP1intronic
514212113911rs11750521TC0.790.650.660.61BLD7 tissues24 altered motifs5 hitsNDFIP1intronic
514212194311rs1835966CT0.790.650.650.619 tissuesZbtb38 hitsNDFIP1intronic
514212220611rs1835965GA0.790.650.650.618 tissuesSKINPax-6,ZNF2635 hitsNDFIP1intronic
514212247011rs10463348GT0.790.650.650.61Cdx,Foxa,SRF5 hitsNDFIP1intronic
514212427411rs6877864AG0.790.650.650.616 tissuesSKINGATA15 altered motifs5 hitsNDFIP1intronic
514212430511rs6882226TA0.790.650.650.616 tissuesSKINGATA17 altered motifs5 hitsNDFIP1intronic
514212542611rs6883827AG0.790.650.660.61BLDEvi-1,Rad215 hitsNDFIP1intronic
514212589711rs4912623TA0.780.650.660.61BLDFoxk1,Pou2f2,Sox6 hitsNDFIP1intronic
514212705011rs7737631TG0.780.650.670.61BLD, LIV4 hitsNDFIP1intronic
514212734611rs6874308CT0.790.650.650.614 tissuesGI6 altered motifs5 hitsNDFIP1intronic
514212892311rs11739961TG0.790.650.650.61BLD15 tissuesBLD,BLD,BLDMxi1,RFX58 hitsNDFIP1intronic
514212986811rs2338821AG0.790.650.660.61FAT, SKINBLD, LIV, MUSYY16 hitsNDFIP1intronic
514212997211rs4391200AG0.790.650.660.61FAT, SKINBLD, LIV, MUSZfp1875 hitsNDFIP1intronic
514213003211rs10062349GA0.790.650.660.61DMRT7,Mef2,Pax-45 hitsNDFIP1intronic
514213042011rs6860138GA0.790.650.660.61FATBLD, FAT, LIVBLD4 altered motifs8 hitsNDFIP1intronic
514213088311rs6580228CT0.790.650.660.61BLDSox5 hitsNDFIP1intronic
514213118911rs6580229AG0.790.650.660.61BLDNr2f2,Pax-25 hitsNDFIP1intronic
514213363911rs6863411AT0.790.650.660.61BLDBLD, LIV, GIGIFOXA1,FOXA2,HNF4ACrx,Gfi11 hit141 hits13 hitsNDFIP1intronic
514213412611rs2043280CG0.790.650.660.61BLDBLD, LIV, GIGcm1,Mef28 hitsNDFIP1intronic
514213428911rs7709361TC0.790.650.660.61BLDBLD, LIVRXRA1 hit8 hitsNDFIP1intronic
514213440111rs7723666CT0.790.650.660.61BLDBLD, LIVMaf,Pou1f18 hitsNDFIP1intronic
514213599911rs7733850CT0.790.650.650.61BLDFoxp1,GATA,Nanog8 hitsNDFIP1intronic


Query SNP: rs713875 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
223019649811rs713875CG0.350.440.660.5516 tissues19 tissues49 tissues7 bound proteins5 altered motifs1 hit2 hits10 hitsRP3-438O4.4


Query SNP: rs744166 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
174236218311rs744166AG0.680.310.380.43MUS, GI24 tissues4 tissuesUSF1,MAX,MXI1PLZF2 hits8 hits6 hitsSTAT3intronic


Query SNP: rs2149085 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
616695748311rs2149083GC0.760.570.610.5221 tissues6 tissues37 tissues11 bound proteins21 altered motifs17 hits291bp 5' of RNASET2
616695762211rs2149085TC0.760.570.610.5216 tissues15 tissues25 tissuesPOL2,FOXA2,HEY11 hit19 hits430bp 5' of RNASET2
616695824911rs2769347TA0.760.570.610.52BLD, LIV8 tissues6 tissuesHEY1,TCF44 altered motifs17 hits1.1kb 5' of RNASET2


Query SNP: rs740495 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
19112483611rs740495AG0.660.370.320.257 tissuesMUS,OVRY,MUS7 altered motifs1 hit3 hitsSBNO2intronic


Query SNP: rs1456896 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
75026486511rs1456896CT0.580.720.420.68BLDBLD, THYM5 tissuesHNF42 hits321 hits9.9kb 3' of AC020743.4


Query SNP: rs1736020 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
211544023311rs1736020CA0.090.400.190.40BLD7 tissuesBLD,MUS4 altered motifs1 hit5 hits38kb 5' of AJ006998.2


Query SNP: rs4802307 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
194634654911rs4802307GT0.030.240.040.2924 tissuesBRST40 tissuesCEBPB,POL2HNF41 hit263 hits7 hits444bp 5' of PPP5C


Query SNP: rs56163845 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
517389971111rs72810989AG0.040.170.070.31BRN, HRT11 tissues4 altered motifs3 hitsCPEB4intronic
517389988811rs17694791CT0.040.170.070.31BRN15 tissuesSETDB13 hitsCPEB4intronic
517390102111rs17694835GT0.040.170.070.31HRT8 tissuesArid5a,Foxa,STAT3 hitsCPEB4intronic
517390484811rs72810995AG0.040.170.070.31BLD, SKIN, BRNMxi1,Pitx23 hitsCPEB4intronic
517390721611rs75049939TG0.040.170.070.31BLD10 tissues4 altered motifs3 hitsCPEB4intronic
517391085011rs17695092TG0.040.170.070.31STRM, BRN, HRT13 altered motifs1 hit8 hits8 hitsCPEB4intronic
517391221911rs7736263GT0.040.170.070.3111 tissuesZic11 hits13 hitsCPEB4intronic
517391349311rs72812804TG0.040.170.070.319 tissues5 altered motifs3 hitsCPEB4intronic
517391715011rs72812805TC0.040.170.070.31MUS, BLD9 tissues5 altered motifs3 hitsCPEB4intronic
517391802011rs55946741AG0.040.170.070.3122 tissuesPANC52 tissues12 bound proteinsIrf3 hitsCPEB4intronic
517392115311rs10516107GA0.040.170.070.316 tissues4 altered motifs5 hits8 hitsCPEB4intronic
517392283711rs1484803AG0.040.170.070.3115 tissuesBLD,SKIN,HRT6 altered motifs9 hits8 hitsCPEB4intronic
517392340211rs966544AG0.040.170.070.31HRT19 tissuesHRT,BLD,BLDEBF1AP-1,BATF9 hits8 hitsCPEB4intronic
517392398711rs72812811GA0.040.170.070.31BLD, VAS, BONE19 tissues14 tissues5 altered motifs3 hitsCPEB4intronic
517392407811rs17695555CT0.040.170.070.315 tissues19 tissues7 tissues3 hitsCPEB4intronic
517392651111rs747472TC0.040.170.070.31STRM, BRN15 tissues15 tissues4 bound proteins13 hits8 hitsCPEB4intronic
517393020311rs113932433GA0.040.170.070.317 tissues3 hitsCPEB4intronic
517393080711rs56281418TC0.040.170.070.314 tissues3 hitsCPEB4intronic
517393133411rs7705507CT0.060.170.070.318 tissues4 altered motifs3 hitsCPEB4intronic
517393545511rs6861681GA0.040.170.070.31LNG5 tissuesHP1-site-factor,Hlx1,Pou6f11 hit6 hits8 hitsCPEB4intronic
517393572311rs72812826CT0.040.170.070.31LNG4 tissues7 altered motifs3 hitsCPEB4intronic
517393830711rs56245789TC0.040.170.070.31BLDERalpha-a,GATA,Zbtb33 hitsCPEB4intronic
517394058311rs56184817TC0.040.170.070.31LNG, BLD8 tissuesLNG4 altered motifs3 hitsCPEB4intronic
517394562211rs72812832GA0.040.170.070.317 tissues7 altered motifs3 hitsCPEB4intronic
517394614011rs17696147TC0.040.170.070.315 tissues3 hitsCPEB4intronic
517394694511rs56163845AG0.040.170.070.31GI, PANC, LIVGIMyc,RXRA3 hitsCPEB4intronic
517394775711rs72812842CT0.040.170.070.31GI, LIVCEBPB,CEBPG,p3003 hitsCPEB4intronic
517394825411rs55924019AG0.040.170.070.31GIHbp13 hitsCPEB4intronic


Query SNP: rs11584383 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
120096673811rs11584383TC0.160.200.010.28BDP1,Nkx22 hits1 hit10 hits2.7kb 3' of KIF21B


Query SNP: rs140068907 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
63269166611rs140068907AC0.000.010.070.00BLD4 altered motifs23kb 5' of HLA-DQB1


Query SNP: rs1487630 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
43833344611rs73243351GA0.330.070.200.08BLD, FAT6 tissuesPU1,STAT3STAT33kb 5' of RP11-83C7.1
43833420211rs1487630CT0.300.070.250.08BLDArid5b,TATA,TCF121 hit33kb 5' of RP11-83C7.1
43833838611rs143415392ACA0.300.070.270.0815 altered motifs29kb 5' of RP11-83C7.1


Query SNP: rs102275 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
116179033111rs102275TC0.630.630.410.3711 hits156 hits41 hitsC11orf10intronic


Query SNP: rs10486483 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
72684626611rs10270187CG0.140.200.110.224 altered motifs13 hitsSKAP2intronic
72684684911rs10251839CT0.140.200.110.22Myf11 hitsSKAP2intronic
72684799611rs3801812CT0.140.200.110.22Pax-413 hitsSKAP2intronic
72684832311rs10272190TA0.140.200.110.224 altered motifs13 hitsSKAP2intronic
72684851011rs66552416TCT0.150.200.110.22Pou6f1,TEF11 hitsSKAP2intronic
72684853611rs10272457TC0.140.200.110.228 altered motifs13 hitsSKAP2intronic
72684865811rs10272603TC0.140.200.110.22RXRA11 hitsSKAP2intronic
72684929911rs6461979TC0.010.190.110.225 altered motifs14 hitsSKAP2intronic
72685024311rs17376018AG0.180.200.110.225 tissuesSKIN,BLDCEBPB,p30011 hitsSKAP2intronic
72685082711rs4722647GC0.150.190.110.22FAT, BLD, SKINBLDCHD2,Pax-411 hitsSKAP2intronic
72685095311rs3934268GC0.150.200.110.22FAT, BLD, SKIN13 altered motifs11 hitsSKAP2intronic
72685105311rs2031811TC0.150.200.110.22BLD, SKIN6 altered motifs14 hitsSKAP2intronic
72685139711rs2030136TC0.150.200.100.224 altered motifs13 hitsSKAP2intronic
72685204611rs7804356TC0.150.200.110.22GR1 hit3 hits14 hitsSKAP2intronic
72685270611rs73069533GA0.010.190.110.22Ik-2,Irf11 hitsSKAP2intronic
72685282111rs10486483GA0.150.200.110.224 altered motifs1 hit225 hits14 hitsSKAP2intronic
72685291211rs3801810GA0.150.200.110.2210 altered motifs14 hitsSKAP2intronic
72685369811rs3823928TC0.150.200.110.224 tissuesADRL5 altered motifs11 hitsSKAP2intronic
72685373811rs7791513AC0.150.200.110.224 tissuesBLD,ADRLUF1H3BETA14 hitsSKAP2intronic
72685390511rs3213853TC0.150.200.110.227 tissues34 tissues5 bound proteins11 hitsSKAP2intronic
72685450411rs6461980TG0.150.200.110.226 tissuesLNG,MUS,BRSTEvi-1,GATA,IRC90081411 hitsSKAP2intronic
72685524111rs12536145AT0.150.200.110.22BLD, BRST8 tissues10 tissuesPou1f1,Pou3f3,TATA11 hitsSKAP2intronic
72685546111rs10256250AT0.150.200.110.2211 tissuesAP-114 hitsSKAP2intronic
72685583711rs3801809GA0.150.200.110.226 tissues5 tissues6 tissuesEts,SIX5,YY111 hitsSKAP2intronic
72685619311rs3839808TAT0.150.200.110.227 tissues4 tissues4 tissues6 altered motifs10 hitsSKAP2intronic
72685693611rs3801808TA0.150.200.110.227 tissues7 tissues4 tissuesGATA14 hitsSKAP2intronic
72685782011rs3801807TC0.150.200.110.2217 tissues10 tissues33 tissuesPax-4,Zic2 hits14 hitsSKAP2intronic


Query SNP: rs12942547 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
174237552611rs12942547AG0.420.290.380.42BLDBRST, BLD, BRN8 altered motifs1 hit340 hits1 hitSTAT3intronic


Query SNP: rs151181 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
162847919611rs151181TC0.150.400.130.35BLDPou1f11 hit9 hits182 hitsRP11-435I10.4intronic
162848118911rs151303CA0.120.390.120.35GIGI4 tissuesNr2f2176 hitsRP11-435I10.4intronic
162848443111rs151182CT0.120.390.130.354 altered motifs176 hitsRP11-435I10.4intronic
162848573811rs151301TA0.120.390.120.35BLDCACD,PU.1176 hitsRP11-435I10.4intronic


Query SNP: rs212388 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
615906940411rs212388CT0.320.450.370.58ESC, IPSC, BLDIPSC, BLD, THYM5 tissuesMAXIk-1,MZF1::1-4,STAT3 hits379 hits1 hit4.1kb 5' of RP1-111C20.3


Query SNP: rs293526 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
11rs77796963TC0.480.650.810.72ESC, STRMUBE3Dintronic
68291909911rs293496AC0.480.650.810.7212 altered motifs6 hitsUBE3Dintronic
68292220111rs293499TG0.480.650.810.72STRMMUSBATF,DMRT5,Irf6 hitsUBE3Dintronic
68292309211rs293501TC0.470.650.810.72Pou1f1,TEF-16 hitsUBE3Dintronic
68292394611rs293503TA0.480.650.810.7210 altered motifs5 hitsUBE3Dintronic
68292434211rs2783159AG0.480.650.810.72HP1-site-factor,RXRA,SIX55 hitsUBE3Dintronic
68292651811rs293505GC0.480.650.810.725 hitsUBE3Dintronic
68292938411rs293515GA0.480.650.810.724 altered motifs5 hitsUBE3Dintronic
68292965711rs2770679TC0.480.650.810.726 altered motifs5 hitsUBE3Dintronic
68293025011rs293514AG0.480.650.810.72p535 hitsUBE3Dintronic
68293087411rs293512GA0.480.650.810.72KAP1,SETDB18 altered motifs5 hitsUBE3Dintronic
68293252511rs293510CT0.480.650.810.72SMC35 hitsUBE3Dintronic
68293259411rs293509TC0.480.650.810.72Nanog5 hitsUBE3Dintronic
68293335211rs293508CT0.480.650.810.72Cdx2,Mrg1::Hoxa9,NF-E25 hitsRP11-445L13__B.3intronic
68293502411rs2813803AG0.480.650.810.725 hitsRP11-445L13__B.3intronic
68293534311rs913577CT0.480.650.810.724 altered motifs5 hitsRP11-445L13__B.3intronic
68293616411rs2783166AG0.470.650.810.72Bcl6b5 hitsRP11-445L13__B.3intronic
68293669211rs293529TA0.480.650.810.726 altered motifs5 hitsRP11-445L13__B.3intronic
68293746911rs293528CA0.480.650.810.725 hitsRP11-445L13__B.3intronic
68293813511rs293527CT0.480.650.810.729 altered motifs5 hitsRP11-445L13__B.3intronic
68293833711rs293526CT0.480.650.810.72GR5 hitsRP11-445L13__B.3intronic
68293937811rs293525CT0.480.650.810.72Sox3 hits5 hitsUBE3Dintronic
68294014011rs293524GT0.450.660.810.72STRM5 altered motifs6 hitsUBE3Dintronic
68294202211rs293522GA0.430.650.810.72PTF1-beta,PU.1,TR46 hitsUBE3Dintronic
68294327811rs169789CT0.470.650.810.72ERalpha-a,GATA5 hitsUBE3Dintronic


Query SNP: rs3897478 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
111990856711rs3897478TC0.390.120.030.11Maf1 hit6 hits687bp 3' of RP5-1042I8.7
111991268711rs699779AG0.400.120.030.11STRMYY12 hits3 hitsNOTCH23'-UTR
111991296311rs835576TC0.400.120.030.11BRST, STRMPax-45 hitsNOTCH23'-UTR
111991394011rs835575GT0.390.110.030.11BRST4 altered motifs2 hits6 hitsNOTCH23'-UTR
111991538111rs6685892AT0.390.110.030.11BRST10 altered motifs5 hitsNOTCH2synonymous
111995288311rs2934387TC0.390.120.030.11LIV10 altered motifs6 hitsNOTCH2intronic


Query SNP: rs9292777 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
54043784611rs9292777CT0.670.510.150.5814 tissues25 tissues6 bound proteins3 hits1 hit1 hit117kb 3' of AC108105.1


Query SNP: rs12720356 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
191035929911rs12720356AC0.010.050.000.10PLCNT2 hits5 hits8 hitsTYK2missense


Query SNP: rs7438704 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
44836122811rs7438704AG0.440.540.480.645 tissues15 tissues6 tissuesFoxa,GCNF,STAT228 hits3 hitsSLAIN2intronic
44836196611rs6837335AG0.440.540.480.648 tissuesHbp1,RORalpha11 hit3 hitsSLAIN2intronic


Query SNP: rs10495903 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
24357977911rs10495903CT0.170.100.010.11RFX5,SMC32 hits230 hits1 hitTHADAintronic


Query SNP: rs11230563 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
116100873711rs11230563CT0.590.350.160.34ESC, IPSC, BRN12 tissues5 tissuesUSF1E2A,Myf1 hit281 hits12 hitsCD6missense


Query SNP: rs11681525 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
214472930011rs72852164AG0.010.020.000.08INSM1,VDRAC074093.1intronic
214472951411rs113784023AG0.010.020.000.086 altered motifsAC074093.1intronic
214473427611rs74754482GA0.010.020.000.085 altered motifsAC074093.1intronic
214473481511rs11681525CG0.010.020.000.08BLD,BLDAC074093.1intronic
214473576711rs74973835GA0.000.020.000.088 altered motifsAC074093.1intronic
214473931911rs72852173AG0.010.020.000.08AC074093.1intronic
214474128911rs112386241TC0.000.020.010.085 altered motifsAC074093.1intronic
214474242111rs111427713CT0.010.020.000.085 altered motifsAC074093.1intronic
214474367911rs139331692CAGC0.010.020.000.08DMRT5AC074093.1intronic
214474412111rs72852183AT0.010.020.000.08Gm397AC074093.1intronic
214474893411rs72852199CT0.000.020.000.084 altered motifsAC074093.1intronic
214475409811rs72853207TC0.000.020.000.08DMRT2,Hoxd10,SoxAC074093.1intronic
214475512411rs72853210AG0.000.020.000.085 altered motifsAC074093.1intronic
214475617411rs11675927GT0.010.020.000.08ESCGR,SoxAC074093.1intronic
214476048311rs72853214AC0.020.030.000.08Sin3Ak-20,Tel2AC074093.1intronic
214477123211rs72853221CA0.010.020.000.08BRN5 tissuesSKINAC074093.1intronic
214477689811rs72853226CA0.010.020.000.084 tissuesSKIN,SKIN,LNG5 altered motifsAC074093.1intronic
214478369411rs72853229AG0.010.020.000.08Pbx-1AC074093.1intronic
11rs1456911047-merC0.010.020.000.08ZEB1AC074093.1intronic
214478653011rs113593659GA0.010.020.000.08AC074093.1intronic
214479238911rs67365209AC0.140.020.000.0836 altered motifsAC074093.1intronic
214479770511rs72853247CT0.010.020.000.08LNG, GI, BLDE2FAC074093.1intronic
214480332311rs72853253CT0.000.020.000.08ESDR6 altered motifsAC074093.1intronic
214480405111rs11687464GA0.000.020.000.087 altered motifsAC074093.1intronic
214481016111rs11674685CA0.010.020.000.08ESDR5 altered motifsAC074093.1intronic
214481285211rs72853263GT0.010.020.000.08Foxa,Foxj2AC074093.1intronic


Query SNP: rs17221417 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
165070491911rs11649521GA0.050.210.000.284 altered motifs5 hitsNOD2intronic
165070567111rs17221417CG0.050.220.000.28BLD, VASBLD,SKIN,VASCFOS,GATA2NRSF1 hit3 hits5 hitsNOD2intronic


Query SNP: rs1799964 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
63157453111rs1799964TC0.170.230.190.22BLD7 tissues4 bound proteinsRXRA,TATA1 hit1 hit9 hits206bp 3' of LTA


Query SNP: rs516246 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
194870285111rs679574CG0.490.380.010.43SPLNRREB-131 hitsFUT2intronic
194870288811rs516316GC0.490.380.010.43SPLNMyc,Nrf11 hit30 hitsFUT2intronic
194870291511rs516246CT0.490.380.010.43SPLN8 altered motifs3 hits178 hits31 hitsFUT2intronic
194870320511rs681343CT0.490.380.010.431 hit31 hitsFUT2synonymous
194870341711rs601338GA0.490.380.010.43HDAC2,HNF42 hits31 hitsFUT2nonsense


Query SNP: rs11195128 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
1011042639011rs11195128CT0.170.230.160.335 tissues16 tissues18 tissues6 bound proteinsArid3a,Cphx,p3001 hit1 hit2.4kb 3' of RP11-525A16.1


Query SNP: rs11679753 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
26232518611rs11679753AG0.450.590.620.61BLDBLD14 altered motifs1 hit60kb 3' of snoU13


Query SNP: rs1199103 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
105818516311rs1199106CT0.680.250.430.21CCNT2,GATA,TAL120 hits6.4kb 3' of IPMK
105818702011rs1199104TG0.670.250.430.21Rad21,SP1,THAP119 hits4.5kb 3' of IPMK
105818747011rs1199103AG0.680.240.430.21Sox2 hits20 hits4kb 3' of IPMK
105818754211rs1199102CG0.680.250.430.2120 hits4kb 3' of IPMK
105818814011rs1199101CT0.680.250.430.21MUSOVRY6 altered motifs20 hits3.4kb 3' of IPMK
105818828311rs1199100GA0.680.250.430.21MUSPou1f1,Pou3f220 hits3.2kb 3' of IPMK


Query SNP: rs12718244 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
75013605811rs12718244GA0.180.270.160.4111 altered motifs1 hitC7orf72intronic


Query SNP: rs2488397 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
119773214911rs2488397GC0.340.230.190.18ESDRIk-11 hitDENND1Bintronic
119773224611rs2488398GC0.340.230.190.18ESDRBLD34 altered motifs1 hitDENND1Bintronic
119773286211rs16841904CT0.110.220.190.184 tissuesSpdef1 hitDENND1Bintronic
119773327111rs2488401CT0.340.230.190.186 tissuesFOXA15 altered motifs1 hitDENND1Bintronic


Query SNP: rs780093 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
22751973611rs780093TC0.890.600.440.59GILIVINSM112 hits42 hits27 hitsGCKRintronic


Query SNP: rs1260326 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
22750807311rs1260326TC0.880.590.440.59LIVNRSF40 hits477 hits28 hitsGCKRmissense


Query SNP: rs13001325 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
210231610211rs950880CA0.150.270.440.356 tissuesSKIN,CRVX,VASGATA21 hit7 hits6 hitsIL1RL1intronic
210232257611rs13001325CT0.160.270.440.355 tissuesVASHEY17 hits5 hitsIL1RL1intronic


Query SNP: rs1569328 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
147527504811rs1569328CT0.010.080.280.16BLD15 tissues32 tissues7 bound proteinsEgr-1192 hits1 hit3.1kb 3' of RP11-293M10.2


Query SNP: rs1801274 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
116150906911rs4657041TC0.480.450.280.50BLDBLD, SKIN4 altered motifs1 hitFCGR2Aintronic
116150995511rs1801274AG0.490.450.280.50BLD, SPLN5 hits195 hits4 hitsFCGR2Amissense


Query SNP: rs6651252 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
812854145111rs10103637CA0.320.160.030.10BLDNF-kappaB,PU.1,STATRP11-89M16.1
812854145711rs10103640CT0.320.160.030.10BLD22 altered motifsRP11-89M16.1
812854319711rs938651AC0.320.160.030.10BLD7 tissuesMUSRP11-89M16.1
812854328611rs2011527TC0.320.160.030.10BLD7 tissues4 tissues12 altered motifsRP11-89M16.1
812854391711rs6470637AG0.320.160.030.10BLD6 tissues4 altered motifs2 hitsRP11-89M16.1
812854411011rs16903097TG0.300.150.020.10BLD7 tissuesBLD,THYM,PANCBCL,NRSF,Sin3Ak-20RP11-89M16.1
812854527711rs6982966GA0.350.170.030.10BLD4 altered motifsRP11-89M16.1
812854534611rs6982716AG0.360.170.030.10BLDRP11-89M16.1
812854570611rs73374987CT0.270.150.030.10BLD4 altered motifsRP11-89M16.1
812854706511rs10098765AG0.290.150.010.10Nrf1,TATA,TCF4RP11-89M16.1
812854848211rs10678821TTTTTC0.290.150.020.107 altered motifsRP11-89M16.1
812854897011rs77247401CCTG0.290.160.030.10GR,Nkx2RP11-89M16.1
812854907711rs73374998TA0.360.170.030.10PLCNT,LNGRP11-89M16.1
812854962011rs73375000CT0.290.150.030.10Eomes,Spz1RP11-89M16.1
812855018411rs10089868AC0.290.150.010.104 altered motifsRP11-89M16.1
812855021211rs10089972CT0.290.150.010.10GR,Sin3Ak-20,YY1RP11-89M16.1
812855269811rs73376904AT0.290.160.030.10BLD, GI, LIVGI5 altered motifsRP11-89M16.1
812855493511rs6651252TC0.330.170.030.10BLD, PANC, LNG10 tissues21 tissues12 bound proteinsSP1,TCF42 hits135 hitsRP11-89M16.1


Query SNP: rs1517352 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
219106673811rs1517352AC0.070.500.530.61FAT, BLD5 tissuesBLDHMG-IY,Ik-21 hit483 hits1 hitSTAT4intronic


Query SNP: rs1847472 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
69024627611rs62408224AG0.090.280.050.35BLD, HRTHoxa13,Hoxb13,Nkx3BACH2intronic
69024669011rs62408225AG0.110.280.040.35BLD19 altered motifsBACH2intronic
69024878311rs905670GA0.090.280.050.35BLD, SKIN, THYM8 altered motifsBACH2intronic
69025545211rs62408227AG0.160.280.050.35BLD, THYMMxi1,SIX5,TBX5BACH2intronic
69025669611rs11752685AC0.110.280.050.35MUS11 tissuesFoxd1,Foxo,HDAC2BACH2intronic
69025747811rs1604831GA0.100.280.050.3510 tissuesMAFKCOMP1BACH2intronic
69025950211rs1604830TC0.080.280.050.35BLD4 altered motifsBACH2intronic
69026049311rs2089126AG0.170.280.050.35BLDFoxl1,GR,Mef2BACH2intronic
69026344011rs1847472CA0.110.280.050.355 tissuesNcx,PLZF,TATA2 hits387 hitsBACH2intronic
69026627111rs56106243CT0.110.280.050.35BLDBLD, THYMBACH2intronic
69026651511rs55885254TC0.090.280.050.35BLDBLD, THYMMybBACH2intronic
69026689011rs62408233GA0.090.280.050.35BLD4 tissuesNkx2,PU.1BACH2intronic
69026866411rs62408235TC0.050.270.010.35BLDBLD, THYM4 altered motifsBACH2intronic
69027042911rs62408236CT0.160.280.050.35BLD, THYMPax-3,Pax-5BACH2intronic
69027062611rs62408237CG0.170.280.050.35BLD7 altered motifsBACH2intronic
69027160011rs55771973TG0.090.280.050.35BLDBLDNF-I,p53BACH2intronic
69027193811rs45553631CT0.160.280.050.35BLDBLD, THYM, SPLN5 tissuesBACH25'-UTR
69027266811rs969577TC0.050.270.010.35BLDBLD, THYM, SPLN4 altered motifsBACH2intronic
69027413111rs905671AT0.160.280.050.35BLD, THYMBLD, MUS, THYMBLD,BLD,THYMKAP1BCL,CEBPGBACH2intronic
69027663411rs6454805AG0.190.280.050.35BLDBLD6 altered motifsBACH2intronic
69027684011rs6899623AG0.190.280.050.35BLDBLDFoxp1,HDAC2BACH2intronic
69027703011rs2325292TC0.170.280.050.35BLDBLDMef2,SIX5BACH2intronic
69027779311rs2134814CG0.120.280.050.35MUSBLD, THYM, MUSHRTEvi-1,OsrBACH2intronic


Query SNP: rs212388 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
615906940411rs212388CT0.320.450.370.58ESC, IPSC, BLDIPSC, BLD, THYM5 tissuesMAXIk-1,MZF1::1-4,STAT3 hits379 hits1 hit4.1kb 5' of RP1-111C20.3


Query SNP: rs224136 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
106271091511rs224136CT0.810.240.280.18BLDESDR, BLDBLDBATF,Irf1 hit2 hits39kb 3' of ZNF365


Query SNP: rs2549794 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
59689566811rs2549783TC0.640.680.680.59BLD, HRTBLDMyc,NF-kappaB105 hitsERAP2intronic
59689882911rs3849749AT0.640.690.730.59Smad4105 hitsERAP2intronic
59690070811rs251340AG0.640.680.720.59Pax-5102 hitsERAP2intronic
59690422311rs2548530TC0.640.680.730.59ESDR, FAT, BLD5 tissues9 altered motifs104 hitsERAP2intronic
59690884511rs2549794CT0.640.680.730.59LIV, ADRL, MUS1 hit7 hits116 hitsERAP2intronic
59691173011rs2910793GA0.640.680.730.59MUSHNF1,NRSF,TCF12102 hitsERAP2intronic
59691394411rs2859491TC0.640.690.720.59102 hitsERAP2intronic
5969159711-1rs2351011CA0.360.320.280.41Crx,Pitx2,SREBP102 hitsERAP2intronic
5969163751-1rs2927609GA0.360.320.280.41Sox105 hitsERAP2intronic
5969170991-1rs1363907GA0.360.310.280.41Pax-4,Sox1 hit177 hits111 hitsERAP2intronic
5969172941-1rs1820148AG0.360.320.280.418 altered motifs101 hitsERAP2intronic
5969174001-1rs1363908TC0.360.320.280.417 altered motifs102 hitsERAP2intronic


Query SNP: rs3742130 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
139925508711rs3742130GA0.040.180.050.21BLD, GI, MUSBLD,MUS,MUSDMRT3,GR,Znf143184 hits1 hitGPR18synonymous
139926418211rs12857217CT0.080.190.050.21BLD8 tissues9 tissues1 hit1 hitUBAC2intronic
139926762611rs9557189AG0.040.180.050.21ESDR, BLDBLD4 altered motifs1 hit1 hitUBAC2intronic


Query SNP: rs3764147 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
134388378911rs3764147AG0.330.370.320.24FAT6 tissues5 altered motifs4 hits321 hits17 hitsLACC1missense
134388610611rs1932990CT0.330.370.320.249 altered motifs17 hitsLACC1intronic


Query SNP: rs3853824 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
175680122111rs2197258AT0.700.650.830.63Foxi1,Foxq1,TCF1216 hitsC17orf67intronic
175680272111rs6503764TC0.700.650.830.636 tissuesIPSCFoxa,TCF12,p30016 hitsC17orf67intronic
175680321111rs6503765GA0.700.650.830.635 tissuesLNGIrx1 hit16 hitsC17orf67intronic
175680363211rs3853824TC0.690.650.830.63LNG4 altered motifs1 hit16 hitsC17orf67intronic


Query SNP: rs6740847 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
218144362511rs6740847AG0.690.440.350.57BLD10 altered motifs5 hits5 hits14kb 5' of ITGA4


Query SNP: rs7554511 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
120090510111rs35730213GC0.150.190.000.267 tissuesDobox48 hitsC1orf106intronic
120090596711rs12132298TC0.150.190.000.266 tissues18 tissues5 bound proteinsHNF1,TCF48 hitsC1orf106intronic
120090676911rs59655222TC0.150.190.000.265 tissuesESDR,PLCNT8 hitsC1orf106intronic
120090843411rs7554511CA0.150.190.000.26GI10 tissuesGI,GIFOXA1GATA,Maf5 hits574 hits8 hitsC1orf106intronic
120090872211rs41299637TG0.150.190.000.26GI6 tissuesLNG,PLCNTCMYC,GATA3,P3008 hitsC1orf106intronic
120090959911rs12131796GA0.150.190.000.26STRM, GI, LNGBLD4 altered motifs8 hitsC1orf106intronic


Query SNP: rs7555082 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
119862953311rs7555082GA0.080.060.000.11BLDBLDNF-kappaB1 hit9.1kb 5' of PTPRC


Query SNP: rs76181804 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
119863257511rs76181804AG0.080.060.000.11BLDBLD, THYM5 altered motifs6.1kb 5' of PTPRC
119864140611rs75567729AG0.080.060.000.115 tissuesMUS, BRSTTHYMHoxd10,Pou6f1PTPRCintronic


Query SNP: rs11195128 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
1011042639011rs11195128CT0.170.230.160.335 tissues16 tissues18 tissues6 bound proteinsArid3a,Cphx,p3001 hit1 hit2.4kb 3' of RP11-525A16.1


Query SNP: rs13361189 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
515081694111rs75294883TC0.030.110.350.09DMRT744 hits20kb 3' of C5orf62
515084382511rs13361189TC0.460.150.440.09Hoxa4,Pou2f2,Zfp4101 hit1 hit33 hits2.7kb 5' of IRGM
515084395311rs76548544TA0.460.150.440.099 altered motifs31 hits2.6kb 5' of IRGM
515084408511rs73282255AT0.460.150.440.09GIPitx2,STAT31 hits2.4kb 5' of IRGM
515084416011rs75774363CT0.310.140.440.09GIIrf,Pax-536 hits2.4kb 5' of IRGM
515084417511rs80075680CT0.460.150.440.09GIHP1-site-factor,Hand131 hits2.3kb 5' of IRGM
515084481711rs75071288CT0.460.150.440.09BCL3Egr-131 hits1.7kb 5' of IRGM
515084536211rs4958843TC0.460.150.440.09CTCF,Nkx2,Rad2131 hits1.2kb 5' of IRGM
515084539011rs4958423GA0.450.150.440.097 altered motifs32 hits1.1kb 5' of IRGM
515084547411rs4958424CT0.460.150.440.095 altered motifs31 hits1kb 5' of IRGM
515084550611rs2004711CT0.470.150.440.09AP-2,HES132 hits1kb 5' of IRGM
515084555111rs751627GA0.460.150.440.094 altered motifs32 hits971bp 5' of IRGM
515084602511rs59283234AG0.460.150.440.09BLD31 hits497bp 5' of IRGM
515084686211rs10051804TC0.460.150.450.097 tissues31 hitsIRGM5'-UTR
515084733711rs17111376TC0.460.150.440.09BLD7 tissues45 tissues17 bound proteinsCdx,Hand1,Smad331 hitsIRGMintronic
515084843611rs10065172CT0.460.150.440.095 tissuesEn-1,Nkx2,Rad2132 hitsIRGMsynonymous


Query SNP: rs4802307 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
194634654911rs4802307GT0.030.240.040.2924 tissuesBRST40 tissuesCEBPB,POL2HNF41 hit263 hits7 hits444bp 5' of PPP5C


Query SNP: rs4902642 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
146874348211rs4902642GA0.260.310.260.43ESDR, BLD4 tissuesGATA,Pax-51 hit7.5kb 5' of U6


Query SNP: rs61959448 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
134233618311rs61959448GA0.040.120.140.124 altered motifs13kb 3' of AKAP11


Query SNP: rs727563 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
224146821211rs505533AC0.290.440.490.7824 tissues4 tissuesEts68 hitsPHF5Aintronic
224147137311rs727563CT0.220.440.490.784 tissues10 tissuesGI,GIHNF169 hitsACO2intronic


Query SNP: rs76418789 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
16718291311rs76418789GA0.000.000.070.00BRNSTAT1 hitIL23Rmissense


Query SNP: rs7746082 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
610598715011rs6568421AG0.170.190.000.296 tissues5 tissuesNkx22 hits82kb 3' of 7SK
610598739411rs7746082GC0.010.180.000.295 tissuesMUS,MUS,SKINCphx,HNF41 hit272 hits83kb 3' of 7SK


Query SNP: rs9258260 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
62975080111rs3823318CG0.130.070.270.09SKINSKIN, HRT, SPLNBLDSox34 hits328bp 3' of Y_RNA
62975497411rs9258258AT0.130.070.270.0925 altered motifs34 hits4.5kb 3' of Y_RNA
62975524411rs9258259AT0.130.070.270.09ESC34 hits4.8kb 3' of Y_RNA
62975538411rs9258260CT0.110.070.270.09ESCBCL31 hit5 hits34 hits4.9kb 3' of Y_RNA
62975628711rs9258262GA0.130.070.270.09ESC, IPSC, GIGIFoxj2,Pou1f134 hits5.8kb 3' of Y_RNA
62976090411rs9258272AG0.130.070.260.094 altered motifs31 hits10kb 3' of Y_RNA


Query SNP: rs11175593 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
124019781011rs11564212GT0.010.160.020.02LIV, BLD10 altered motifsAC079630.4
124019853811rs4767965GA0.010.160.030.02BCL,NRSF,SmadAC079630.4
124020011711rs17465610CT0.010.160.040.0210 altered motifsAC079630.4
124020559611rs10506147TC0.010.160.030.02PLZFAC079630.4
124020813811rs11175593CT0.010.160.030.02BLD4 tissuesE2F,ZEB11 hitAC079630.4
124021577811rs17461575CT0.010.160.030.02BLD4 tissuesSMC3AC079630.4
124021594811rs11564107AG0.010.160.030.02BLD7 tissuesSKIN,CRVXAC079630.4
124022429511rs1388597AG0.010.160.030.0223 tissues4 tissues5 tissues5 altered motifsLRRK2
124022491211rs139549144CG0.010.160.030.0224 tissuesBLD, BRN, HRT46 tissues8 bound proteins6 altered motifsLRRK2
124022735411rs149406366GA0.010.160.030.025 tissues4 tissues18 altered motifsLRRK2intronic
124022866611rs150540643CA0.010.160.030.02BLD5 tissues5 altered motifsLRRK2intronic
124023594511rs117297508CT0.010.160.030.02BLD5 altered motifsLRRK2intronic
124024040111rs11564187AG0.010.160.030.02CDP,Pou2f2LRRK2intronic
124024101711rs11564210CT0.010.160.030.024 tissuesBLD,BLD6 altered motifsLRRK2intronic
124024118911rs11564153CT0.010.160.030.024 tissuesIk-2LRRK2intronic


Query SNP: rs11641184 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
161161079511rs11641184CA0.050.480.340.446 tissues14 tissuesCTCFIrx,Pou2f21 hit1 hitLITAF


Query SNP: rs2076756 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
165071825311rs62029864GA0.050.150.000.22FAT, SKIN6 tissues6 tissuesGATA2GR,Irf,Nkx21 hitNOD2intronic
165072297011rs2076756AG0.050.150.000.22BLDMef2,Nanog6 hits1 hit3 hitsNOD2intronic
165072493811rs749910GA0.050.150.000.22BLDLNGHEY1,TATA1 hitNOD2intronic


Query SNP: rs28449958 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
162851746011rs28449958GA0.230.290.100.316 altered motifs134 hits5.4kb 5' of IL27


Query SNP: rs4263839 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
911480259511rs4366152TC0.890.740.530.69GI, PLCNTNanog1 hit2 hitsTNFSF15intronic
911480416011rs4263839AG0.890.740.530.694 tissues20 tissues11 tissuesGATA38 altered motifs1 hit3 hits2 hitsTNFSF15intronic


Query SNP: rs10865331 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
26232433711rs10865331AG0.460.600.610.624 altered motifs3 hits219 hits1 hit59kb 3' of snoU13


Query SNP: rs10883365 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
109952488011rs4129132TG0.400.570.530.526 tissuesZNF263Brachyury,Pax-58 hits1.5kb 3' of RP11-129J12.2
109952589311rs7916751TA0.570.590.530.52ESC, BLD, GIESDR,ESDRp538 hits456bp 3' of RP11-129J12.2
109952611511rs10748783CA0.460.580.540.52ESDR,ESC8 altered motifs8 hits234bp 3' of RP11-129J12.2
109952673811rs6584282AG0.470.580.530.52IPSC, BLD7 tissuesESC,ESDR,IPSCAP-1,NF-E28 hitsRP11-129J12.2
109952709111rs11190135AG0.520.580.530.524 tissues7 tissues6 tissuesCTBP2,ZNF263MZF1::1-4,VDR8 hitsRP11-129J12.2
109952722711rs10883362CT0.520.580.530.5213 tissuesCTBP2,SUZ12,ZNF263Rad21,ZBTB338 hitsRP11-129J12.2
109952800711rs10883365GA0.480.580.530.5225 tissues2 hits8 hitsRP11-129J12.2
109952802811rs10883366GA0.520.580.530.5223 tissuesAP-2,EBF,Zic8 hitsRP11-129J12.2
109952823311rs10883367TC0.520.580.530.5221 tissues8 hitsRP11-129J12.2
109952859011rs7085798CA0.520.580.530.52BLD, GIESDR, ESC, BLD12 tissues5 altered motifs8 hitsRP11-129J12.2
109952989611rs1548964GC0.490.580.540.524 tissues7 tissues21 tissues4 bound proteinsNanog,RXRA8 hitsRP11-129J12.2
109952994611rs1548963CG0.490.580.540.524 tissues7 tissues16 tissues4 bound proteinsGATA8 hitsRP11-129J12.2
109952997811rs1548962GC0.490.580.540.524 tissues7 tissues13 tissues4 bound proteinsBAF1558 hitsRP11-129J12.2


Query SNP: rs559928 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
116438289811rs559928TC0.650.890.890.837 tissuesIPSC,BLDJUNDGR1 hit449 hits9 hits11kb 3' of RPS6KA4


Query SNP: rs9491697 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
612713497711rs9491697AG0.300.460.530.42FAT, MUS, LNGGATA,Pax-41 hit2 hitsRSPO3intronic


Query SNP: rs1042058 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
103043490211rs306589AG0.160.510.390.6123 tissues52 tissuesPOL24H8Pax-5,Pitx25 hitsMAP3K8intronic
103043815511rs303448GT0.170.510.390.6113 tissues17 tissues9 tissues16 altered motifs6 hitsMAP3K8intronic
103043917211rs1042058TC0.130.510.390.614 tissuesPOL24H8Irf,Lmo2-complex1 hit258 hits5 hitsMAP3K8synonymous
103043932111rs2907AG0.170.510.390.618 tissuesBLDp3005 hitsMAP3K8intronic
103043956011rs303446CT0.180.510.390.618 tissuesBLDDEC,GATA,Hmx4 hitsMAP3K8intronic


Query SNP: rs2062305 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
134246553711rs4512994AC0.270.440.160.56BLDMef2,VDR6 hits97kb 5' of TNFSF11
134246590711rs9594766GA0.270.440.160.56BLD, GILF-A17 hits97kb 5' of TNFSF11
134246911011rs12428853AG0.270.440.160.566 altered motifs6 hits94kb 5' of TNFSF11
134246945911rs12428878AG0.300.440.160.56Nr2f26 hits93kb 5' of TNFSF11
134247534611rs9594768CA0.270.440.160.565 tissuesESDR,IPSC,SKIN6 hits87kb 5' of TNFSF11
134247614411rs34335227AG0.270.440.160.566 altered motifs6 hits87kb 5' of TNFSF11
134247874411rs2062305GA0.300.440.160.56THYM, PANC, BLD37 tissues4 bound proteins1 hit7 hits84kb 5' of TNFSF11
134248086611rs9533122AG0.310.440.160.56Pitx26 hits82kb 5' of TNFSF11


Query SNP: rs56116661 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
318868337211rs56116661CT0.400.160.060.2013 tissues12 tissuesSTAT3GRLPPintronic


Query SNP: rs56116661 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
318868337211rs56116661CT0.400.160.060.2013 tissues12 tissuesSTAT3GRLPPintronic


Query SNP: rs694739 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
116432976111rs694739AG0.040.360.170.40SKIN15 tissuesPANC,GI,LNG6 altered motifs2 hits11 hits30 hits256bp 5' of AP003774.1


Query SNP: rs7702331 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
57324577111rs6452898AC0.500.340.160.37ESDR, ESCGATA,Pbx-1RP11-60A8.1
57324586011rs6452899GA0.500.330.160.37ESDR, ESC, IPSC5 altered motifsRP11-60A8.1
57324622311rs12513457CA0.480.340.160.379 tissues6 tissues9 tissuesNRF1Irf,Klf7,Smad3RP11-60A8.1
57324722911rs9654420AG0.490.340.160.37ESDR,VASHNF4RP11-60A8.1
57324738611rs9654421GT0.490.340.160.37RP11-60A8.1
57324856311rs9654415TC0.570.350.160.37BCL,E2A,Hic1RP11-60A8.1
57325008211rs7341037TC0.540.350.160.37GR,Ik-2,SIX5RP11-60A8.1
57325530711rs7702331AG0.540.340.160.37FAT, SKINAP-1,DEC2 hits1 hitRP11-60A8.1


Query SNP: rs10276381 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
72814151011rs10260837CT0.350.190.320.08Hoxb13,TATA18 hitsJAZF1intronic
72814268711rs10280937TC0.350.190.320.08CTCFp5318 hitsJAZF1intronic
72814592511rs10281214GC0.380.190.320.0817 hitsJAZF1intronic
72814650011rs7796417GC0.390.190.320.08ESDR, PANC, MUSESDR38 altered motifs17 hitsJAZF1intronic
72814751511rs73089302GA0.390.190.320.08ESDR, BLDCEBPB,Pou2f2,Pou3f317 hitsJAZF1intronic
72814766511rs10263857CG0.380.190.320.08EBF,Hic1,RXRA17 hitsJAZF1intronic
72814806511rs78693958CATC0.380.190.320.08ESDR5 altered motifs17 hitsJAZF1intronic
72814835111rs6945537GA0.390.190.320.08ESDRAP-117 hitsJAZF1intronic
72815050211rs10276381CT0.370.190.320.08IPSC,BLD,BLD18 hitsJAZF1intronic


Query SNP: rs71624119 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
55614490311rs71624119GA0.030.140.020.258 tissuesBbx,DMRT1,STATANKRD55intronic
55614642211rs10213692TC0.040.150.020.254 altered motifsANKRD55intronic


Query SNP: rs13428812 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
22526959811rs13428812AG0.300.260.260.356 tissuesCEBPB,Hsf,STAT1 hit2 hitsDNMT3Aintronic


Query SNP: rs6908425 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
62072850011rs6908425TC0.770.790.790.78ESC, IPSC4 altered motifs2 hitsCDKAL1intronic


Query SNP: rs7015630 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
88986369011rs7015630TC0.400.210.250.28Cdx2,Pou2f2,TCF41 hit424 hits3 hits37kb 3' of U6


Query SNP: rs10492862 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
168283385111rs10492862CA0.420.340.050.30IPSCCphx,Pbx-1,SoxCDH13intronic


Query SNP: rs10865331 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
26232433711rs10865331AG0.460.600.610.624 altered motifs3 hits219 hits1 hit59kb 3' of snoU13


Query SNP: rs12242110 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
103524649711rs12255409GA0.490.340.320.32IPSC7 hits527bp 5' of CCNY
103524676711rs12242110AG0.360.330.310.32IPSCBLDHDAC2,Irf1 hit2 hits8 hits257bp 5' of CCNY
103524919311rs12246600AC0.490.340.320.32E2A,Myf8 hitsCCNYintronic
103524975511rs12098720GA0.500.340.320.32Pax-1,p3008 hitsCCNYintronic
103525120611rs34592588AG0.500.340.320.328 hitsCCNYintronic


Query SNP: rs17694108 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
193324047311rs11669923TG0.030.290.280.308 tissuesESDR15kb 5' of SLC7A10
193324064511rs17694108GA0.030.290.280.30LIV9 tissues4 tissuesCEBPA,Hsf,STAT1 hit533 hits15kb 5' of SLC7A10


Query SNP: rs2274910 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
116087727411rs17387157GA0.300.670.720.68BLD6 tissuesCTCF,RAD21,SMC3Hoxc10,Pdx15 hitsITLN1intronic
116087762011rs4656955AG0.300.670.720.68BLD, SPLN7 altered motifs5 hitsITLN1intronic
116087810311rs6427550AG0.340.670.720.68BLD5 hitsITLN1intronic
116087810811rs7524351TC0.300.670.720.68BLD5 hitsITLN1intronic
116087871811rs35214362ATA0.340.670.710.68BLD, THYM11 altered motifsITLN1intronic
116087914711rs3766356TC0.310.670.720.68GIBLD, THYMBLD,BLD,BLD4 altered motifs1 hit8 hitsITLN1intronic
116087920311rs3766357GA0.300.670.720.68GIBLD, THYMBLD,BLDRREB-15 hitsITLN1intronic
116087927011rs3766359GA0.300.670.720.68GI4 tissuesBLD,BLDHDAC25 hitsITLN1intronic
116087957711rs2274905GT0.300.670.720.68GIBLD, THYM, OVRYEts,T3R1 hit8 hitsITLN1intronic
116088174411rs7532133AG0.310.660.720.68GIBLDMyc,RFX55 hitsITLN1intronic
116088177411rs6427551CG0.340.660.720.68GIBLD4 hitsITLN1intronic
116088182911rs10908808AG0.340.660.720.688 altered motifs4 hitsITLN1intronic
116088203611rs2274907AT0.340.660.720.68BLDEGR1BDP1,Pax-5,Zic2 hits4 hitsITLN1missense
116088223211rs2274909CT0.310.660.720.68BLDBLD5 hitsITLN1intronic
116088225611rs2274910TC0.310.660.720.68BLDPTF1-beta1 hit7 hits8 hitsITLN1intronic


Query SNP: rs2538470 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
714852178311rs2538473AG0.620.640.830.64BLD, HRT, PLCNTPLCNT1 hit69kb 5' of C7orf33
714852335611rs2538470AG0.620.650.830.64BLDPLCNT,GI4 altered motifs1 hit67kb 5' of C7orf33


Query SNP: rs2641348 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
111989526111rs2641348AG0.390.120.030.11BLD, BRST4 tissuesCphx,Hoxb6,Nkx21363 hits6 hitsADAM30missense
111989740611rs2027447TC0.390.120.030.11BRNHNF1,HNF46 hits910bp 5' of ADAM30


Query SNP: rs35320439 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
224179792611rs35320439TC0.800.370.340.33GI9 tissuesHNF45 hitsGAL3ST2intronic


Query SNP: rs762421 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
214419567811rs762421GA0.880.450.490.617 tissuesBLD,MUSHP1-site-factor,Zfp1051 hit3 hits4 hits5.6kb 5' of AP001057.1


Query SNP: rs7773324 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
638255911rs7773324GA0.130.510.260.56BLDHoxb3,NF-Y,TATA9.2kb 5' of IRF4


Query SNP: rs7927894 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
117659021111rs7926914GT0.290.260.190.3610 tissues16 altered motifs35kb 3' of RP11-672A2.6
117659027211rs7927894CT0.280.260.200.3610 tissuesPax-42 hits2 hits35kb 3' of RP11-672A2.6
117659033111rs7927997CT0.240.260.200.3610 tissuesTHYM4 altered motifs1 hit35kb 3' of RP11-672A2.6


Query SNP: rs7954567 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
12638195911rs7954567GA0.060.220.040.32ESC, IPSCOVRY7 hitsLTBR


Query SNP: rs925255 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
22839192711rs925255CT0.230.320.230.4623 tissues43 tissues6 bound proteinsHoxb13,Hoxd10,OTX1 hit538 hits2 hitsAC104695.3intronic


Query SNP: rs9525625 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
134244389411rs9525625TC0.270.440.160.56Hic1,Pbx-1,TCF11::MafG1 hit8 hits119kb 5' of TNFSF11
134245252511rs1830790GA0.280.440.160.564 altered motifs6 hits110kb 5' of TNFSF11


Query SNP: rs9868809 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
34864362011rs9868809CT0.160.080.110.11SKINSKINHNF431 hitsCELSR3synonymous


Query SNP: rs1042058 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
103043490211rs306589AG0.160.510.390.6123 tissues52 tissuesPOL24H8Pax-5,Pitx25 hitsMAP3K8intronic
103043815511rs303448GT0.170.510.390.6113 tissues17 tissues9 tissues16 altered motifs6 hitsMAP3K8intronic
103043917211rs1042058TC0.130.510.390.614 tissuesPOL24H8Irf,Lmo2-complex1 hit258 hits5 hitsMAP3K8synonymous
103043932111rs2907AG0.170.510.390.618 tissuesBLDp3005 hitsMAP3K8intronic
103043956011rs303446CT0.180.510.390.618 tissuesBLDDEC,GATA,Hmx4 hitsMAP3K8intronic


Query SNP: rs11167764 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
514209950011rs11167764AC0.780.810.820.79BLDBbx,SRF1 hit3 hits9kb 5' of NDFIP1
11rs77110703TG0.790.810.820.79ADRL, MUS, BLDBLD,ADRLERalpha-a,Esr2,RXRA8.2kb 5' of NDFIP1
514210030511rs10057309TC0.780.810.820.79ADRL,SKIN12 altered motifs1 hit8.2kb 5' of NDFIP1
514210085311rs7730511TC0.790.810.820.79BLD, ADRL6 altered motifs1 hit7.7kb 5' of NDFIP1
514210099311rs6580220GA0.790.810.820.79BLD, ADRLRhox111 hit7.5kb 5' of NDFIP1
514210478411rs6887599GA0.780.810.820.79BLD6 tissues4 tissues5 altered motifs3 hits3.7kb 5' of NDFIP1
514210541211rs891991AT0.800.810.810.794 tissues16 altered motifs3 hits3.1kb 5' of NDFIP1
514210865411rs3761757AC0.810.810.810.7924 tissuesPLCNT, GI45 tissues8 bound proteinsBHLHE401 hitNDFIP1


Query SNP: rs17582416 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
103498815311rs79749947AT0.150.330.310.37BRST, SKINBRST,BRSTEts,Evi-111 hits20kb 3' of CUL2
103498992111rs9663401GT0.150.330.310.37BRST, SKIN, GI7 altered motifs11 hits19kb 3' of CUL2
103499052711rs9787566TA0.160.330.310.37BRST14 altered motifs11 hits18kb 3' of CUL2
103499132611rs4351760AG0.160.330.310.37BRST, PLCNTEts,Nr2f211 hits17kb 3' of CUL2
103499167711rs4934695CT0.160.330.310.377 tissuesSKINFoxl1,Foxp111 hits17kb 3' of CUL2
103499219011rs4934527TA0.340.360.310.379 tissues22 tissues5 bound proteinsGATA,TAL111 hits16kb 3' of CUL2
103499618911rs11597483AG0.170.330.310.374 tissues6 tissuesYY1NRSF11 hits12kb 3' of CUL2
103499679311rs35317849CA0.160.330.310.37BLDPPAR,Rad2111 hits12kb 3' of CUL2
103499826411rs4934697CT0.160.330.310.37ESDR4 altered motifs11 hits10kb 3' of CUL2
103499872211rs17582416TG0.230.330.310.37SKIN5 altered motifs1 hit11 hits9.8kb 3' of CUL2
103499964711rs11597392TC0.230.330.310.374 tissuesESDR,MUSUSF14 altered motifs11 hits8.9kb 3' of CUL2


Query SNP: rs2227564 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
107391334311rs2227564TC0.980.750.700.77BRN9 tissues9 tissuesCHD2,NF-I1 hit5 hits8 hitsPLAUintronic


Query SNP: rs259964 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
205924925411rs259964AG0.300.570.910.57Crx,Egr-11 hit576 hits2 hitsZNF831intronic


Query SNP: rs2872507 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
173987114711rs12709365AG0.250.360.310.48BLDBLDBLD6 altered motifs37 hitsZPBP2intronic
173987133011rs13380815AG0.250.360.310.48BLDBLDAP-3,Nkx237 hitsZPBP2intronic
173987395211rs11870965TA0.250.360.310.484 altered motifs1 hit40 hitsZPBP2intronic
173987542111rs10852935CT0.120.350.310.48LNGHoxb61 hit37 hitsZPBP2synonymous
173987620711rs34189114CT0.120.350.310.48AP-137 hitsZPBP2intronic
173987642711rs35736272TC0.110.350.310.48GR,Rhox1137 hitsZPBP2intronic
11rs57151617AC0.250.360.310.48BRST9 altered motifs16 hitsZPBP23'-UTR
173987886311rs9907088GA0.240.360.310.48Foxk1,Myc,Sox1 hit39 hits966bp 3' of ZPBP2
173987911711rs36038753GT0.240.360.320.484 altered motifs37 hits1.2kb 3' of ZPBP2
173987951311rs34074973GAGAG0.120.350.310.485 altered motifs15 hits1.6kb 3' of ZPBP2
173988033311rs9904624AG0.230.360.310.4838 hits2.4kb 3' of ZPBP2
173988386611rs12232497TC0.110.350.310.484 altered motifs39 hits6kb 3' of ZPBP2
173988411011rs12232498TC0.240.360.310.484 altered motifs37 hits6.2kb 3' of ZPBP2
173988428111rs12941333CT0.240.360.310.48Pou2f2,Pou3f337 hits6.4kb 3' of ZPBP2
173988451011rs2872507GA0.240.360.310.48BLD4 altered motifs5 hits22 hits41 hits6.6kb 3' of ZPBP2


Query SNP: rs7657746 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
412224046411rs7657746AG0.350.170.050.24NF-kappaB1 hitKIAA1109intronic


Query SNP: rs9286879 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
117288519411rs4916283GA0.230.490.920.248 tissues34 altered motifs1 hitRP1-15D23.2
117288643611rs68143871AG0.300.490.920.2411 tissues6 altered motifs1 hitRP1-15D23.2
117288956711rs10912490CT0.290.490.920.245 altered motifs1 hitRP1-15D23.2
117289089511rs12739009AC0.310.500.920.24FAC11 hitRP1-15D23.2
117289243411rs2213742CT0.300.490.920.241 hitRP1-15D23.2
117289261911rs2213745AG0.300.490.920.24VAS5 altered motifs1 hitRP1-15D23.2
117289309411rs9286879AG0.320.500.920.24CRVX10 tissues2 hits2 hits1 hitRP1-15D23.2
117289324011rs7527462CG0.290.490.920.24CRVX10 tissuesPLCNT,PANCAIRE1 hitRP1-15D23.2
117289379911rs10489276CT0.300.490.920.24CRVX,VAS1 hit1 hitRP1-15D23.2
117289480811rs2157453GA0.300.490.920.24BLD, SKIN12 tissuesBLD,CRVXGATA11 hit1 hit1 hitRP1-15D23.2
117289485211rs2157454GA0.300.490.920.24BLD, SKIN12 tissuesCRVXGATA15 altered motifs1 hitRP1-15D23.2
117289504311rs2187892GA0.300.490.920.245 tissues11 tissuesBLD,CRVXE2F,LBP-1,RXRA1 hitRP1-15D23.2


Query SNP: rs9491697 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
612713497711rs9491697AG0.300.460.530.42FAT, MUS, LNGGATA,Pax-41 hit2 hitsRSPO3intronic


Query SNP: rs10185424 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
210204642711rs10185424TG0.760.620.690.5618 tissues19 bound proteins1 hit4 hits18kb 3' of IL1R2


Query SNP: rs10758669 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
9498160211rs10758669CA0.870.590.670.64MUSLUN-1,Spz15 hits338 hits1 hit3.4kb 5' of JAK2


Query SNP: rs12722489 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
10606004911rs12722489CT0.010.080.130.14BLD, GIBLD, HRT, MUSBLDERalpha-a3 hits1 hitIL2RAintronic


Query SNP: rs17391694 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
17815794211rs17391694CT0.000.050.000.105 tissuesNanog3 hits115 hits5 hits19kb 3' of GIPC2


Query SNP: rs17391694 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
17815794211rs17391694CT0.000.050.000.105 tissuesNanog3 hits115 hits5 hits19kb 3' of GIPC2


Query SNP: rs17694108 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
193324047311rs11669923TG0.030.290.280.308 tissuesESDR15kb 5' of SLC7A10
193324064511rs17694108GA0.030.290.280.30LIV9 tissues4 tissuesCEBPA,Hsf,STAT1 hit533 hits15kb 5' of SLC7A10


Query SNP: rs10798069 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
118690001811rs12720539GGC0.100.300.470.51FAT, GI, BLD6 altered motifsPLA2G4Aintronic
118690332211rs726706AG0.090.300.470.512 hitsPLA2G4Aintronic
118690371411rs10737274GT0.100.300.470.51BDP12 hitsPLA2G4Aintronic
118690518211rs1977064GA0.100.300.470.5117 altered motifs2 hitsPLA2G4Aintronic
118690587611rs10798068AG0.100.300.470.51MUSMAFK6 altered motifs1 hit2 hitsPLA2G4Aintronic
118690632711rs10798069GT0.100.300.470.51SKIN3 hits2 hitsPLA2G4Aintronic


Query SNP: rs11894081 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
2552344111rs2083015TG0.140.740.610.724 altered motifs26kb 3' of AC107057.1
2552387611rs11894081GT0.140.740.610.72Ik-1,Ik-2,Roaz1 hit26kb 3' of AC107057.1


Query SNP: rs16967103 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
153860688711rs72729306TC0.330.130.030.19ESDR, BLD8 altered motifs24 hits41kb 5' of RASGRP1
153860698911rs16967103TC0.290.120.030.19ESDR, BLDLIV,BLD1 hit1086 hits24 hits41kb 5' of RASGRP1


Query SNP: rs2382817 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
22182778711-1rs3817266CT0.210.380.360.365 tissues4 altered motifs81 hitsPNKDintronic
221827805011rs6707559CT0.630.610.630.646 tissuesSKIN10 altered motifs79 hitsPNKDintronic
22182785061-1rs2292551GA0.210.380.360.366 tissuesSKINHEN1,Nr2f2,Pax-588 hitsPNKDintronic
1-1rs63368160TC0.210.380.360.366 tissuesSKINAP-1,LBP-116 hitsPNKDintronic
22182814761-1rs10932768TA0.210.380.360.36MUSFoxd181 hitsPNKDintronic
22182818841-1rs7585702TC0.210.380.360.36GI17 tissuesSKIN4 altered motifs81 hitsPNKDintronic
22182821451-1rs2292554TC0.220.380.370.36GI, MUS19 tissuesTHAP1,YY181 hitsPNKD5'-UTR
22182825221-1rs10932769TG0.210.380.360.366 tissues79 hitsPNKDintronic
22182836461-1rs6729058GA0.210.380.360.36GI, MUS19 tissuesSKINMef2,THAP180 hitsPNKDintronic
22182844401-1rs11692780AG0.210.380.360.368 tissues21 tissues19 tissues8 bound proteinsBDP1,NRSF,Sin3Ak-2081 hitsPNKDintronic
22182854881-1rs7559416AG0.490.400.360.3614 tissues15 tissues5 tissues4 altered motifs85 hitsPNKDintronic
22182855151-1rs7559428AG0.240.390.360.3614 tissues15 tissues4 tissuesEBF,GR88 hitsPNKDintronic
22182855841-1rs7559525AG0.210.380.360.3614 tissues15 tissues4 tissuesERalpha-a,Sin3Ak-2088 hitsPNKDintronic
221828649511rs2382817AC0.620.610.630.6421 tissues8 tissues13 tissuesRXRA1 hit547 hits86 hitsPNKDintronic


Query SNP: rs2476601 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
111383494611rs2476601AG1.000.961.000.90BRST, BLD, SKIN4 tissuesSTAT3Ets,NERF1a,PU.114 hits3 hits1 hitPTPN22


Query SNP: rs6738825 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
219802941511rs10196612TC0.500.430.240.554 altered motifs4 hitsPLCL1intronic
219802958111rs10184227CT0.480.430.240.55ESDRPax-54 hitsPLCL1intronic
219803134711rs10166845AG0.480.430.240.55EBF3 hitsPLCL1intronic
219803217111rs6738825AG0.510.430.240.55ESDR, BLD, BRN4 altered motifs1 hit4 hitsPLCL1intronic
219803362011rs1541953AT0.250.400.240.55STRM, BRNPLCNTRXRA1 hit4 hitsPLCL1intronic


Query SNP: rs864745 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
72814093711rs864745TC0.210.410.210.544 tissues8 altered motifs2 hits202 hits4 hitsJAZF1intronic


Query SNP: rs1049526 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
63297721011rs3129307AG0.990.860.800.9322 tissuesBLD,SKINNF-AT19 hitsBRD2intronic
63298102711rs1049526CT0.990.860.800.93BLD,SKINPOL24H8,POL2,POL2B5 altered motifs7 hitsBRD23'-UTR
63298264711rs3135033CG0.990.860.800.934 tissues9 tissuesBCL3,POL2,POL24H8Hoxd8,Pax-58 hits1.1kb 3' of BRD2
63299140311rs3129305GC0.990.860.800.93Irf,ZEB14 hits1 hit9.9kb 3' of BRD2


Query SNP: rs13003464 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
26095969411rs13003464AG0.910.330.040.377 tissuesHRT,SKIN5 altered motifs3 hits3 hits15 hitsPUS10intronic
26096028011rs67927699GC0.430.310.040.37BRST, STRM, SKINCTCF,Ets,GATA13 hitsPUS10intronic


Query SNP: rs1456893 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
75022844711rs748374CT0.630.730.420.69BLD, BRNBLD, THYM6 tissues5 altered motifs24kb 5' of AC020743.3
75023007611rs1456893GA0.630.730.420.695 tissues5 bound proteins5 altered motifs1 hit2 hits26kb 5' of AC020743.3
75023041811rs2124799CT0.630.730.420.69BLD8 altered motifs26kb 5' of AC020743.3
75024080011rs2168593GA0.630.730.420.69BLD5 altered motifs34kb 3' of AC020743.4
75024194311rs981132TG0.630.730.420.6933kb 3' of AC020743.4


Query SNP: rs1551398 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
812552780911rs1551398GA0.130.530.360.63BLD19 tissues16 tissuesPRDM1SETDB11 hit1 hitRP11-136O12.2
812552884811rs28510097CG0.130.530.360.634 tissues15 tissues30 tissues11 bound proteinsRP11-136O12.2


Query SNP: rs17695092 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
517389971111rs72810989AG0.040.170.070.31BRN, HRT11 tissues4 altered motifs3 hitsCPEB4intronic
517389988811rs17694791CT0.040.170.070.31BRN15 tissuesSETDB13 hitsCPEB4intronic
517390102111rs17694835GT0.040.170.070.31HRT8 tissuesArid5a,Foxa,STAT3 hitsCPEB4intronic
517390484811rs72810995AG0.040.170.070.31BLD, SKIN, BRNMxi1,Pitx23 hitsCPEB4intronic
517390721611rs75049939TG0.040.170.070.31BLD10 tissues4 altered motifs3 hitsCPEB4intronic
517391085011rs17695092TG0.040.170.070.31STRM, BRN, HRT13 altered motifs1 hit8 hits8 hitsCPEB4intronic
517391221911rs7736263GT0.040.170.070.3111 tissuesZic11 hits13 hitsCPEB4intronic
517391349311rs72812804TG0.040.170.070.319 tissues5 altered motifs3 hitsCPEB4intronic
517391715011rs72812805TC0.040.170.070.31MUS, BLD9 tissues5 altered motifs3 hitsCPEB4intronic
517391802011rs55946741AG0.040.170.070.3122 tissuesPANC52 tissues12 bound proteinsIrf3 hitsCPEB4intronic
517392115311rs10516107GA0.040.170.070.316 tissues4 altered motifs5 hits8 hitsCPEB4intronic
517392283711rs1484803AG0.040.170.070.3115 tissuesBLD,SKIN,HRT6 altered motifs9 hits8 hitsCPEB4intronic
517392340211rs966544AG0.040.170.070.31HRT19 tissuesHRT,BLD,BLDEBF1AP-1,BATF9 hits8 hitsCPEB4intronic
517392398711rs72812811GA0.040.170.070.31BLD, VAS, BONE19 tissues14 tissues5 altered motifs3 hitsCPEB4intronic
517392407811rs17695555CT0.040.170.070.315 tissues19 tissues7 tissues3 hitsCPEB4intronic
517392651111rs747472TC0.040.170.070.31STRM, BRN15 tissues15 tissues4 bound proteins13 hits8 hitsCPEB4intronic
517393020311rs113932433GA0.040.170.070.317 tissues3 hitsCPEB4intronic
517393080711rs56281418TC0.040.170.070.314 tissues3 hitsCPEB4intronic
517393133411rs7705507CT0.060.170.070.318 tissues4 altered motifs3 hitsCPEB4intronic
517393545511rs6861681GA0.040.170.070.31LNG5 tissuesHP1-site-factor,Hlx1,Pou6f11 hit6 hits8 hitsCPEB4intronic
517393572311rs72812826CT0.040.170.070.31LNG4 tissues7 altered motifs3 hitsCPEB4intronic
517393830711rs56245789TC0.040.170.070.31BLDERalpha-a,GATA,Zbtb33 hitsCPEB4intronic
517394058311rs56184817TC0.040.170.070.31LNG, BLD8 tissuesLNG4 altered motifs3 hitsCPEB4intronic
517394562211rs72812832GA0.040.170.070.317 tissues7 altered motifs3 hitsCPEB4intronic
517394614011rs17696147TC0.040.170.070.315 tissues3 hitsCPEB4intronic
517394694511rs56163845AG0.040.170.070.31GI, PANC, LIVGIMyc,RXRA3 hitsCPEB4intronic
517394775711rs72812842CT0.040.170.070.31GI, LIVCEBPB,CEBPG,p3003 hitsCPEB4intronic
517394825411rs55924019AG0.040.170.070.31GIHbp13 hitsCPEB4intronic


Query SNP: rs1847472 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
69024627611rs62408224AG0.090.280.050.35BLD, HRTHoxa13,Hoxb13,Nkx3BACH2intronic
69024669011rs62408225AG0.110.280.040.35BLD19 altered motifsBACH2intronic
69024878311rs905670GA0.090.280.050.35BLD, SKIN, THYM8 altered motifsBACH2intronic
69025545211rs62408227AG0.160.280.050.35BLD, THYMMxi1,SIX5,TBX5BACH2intronic
69025669611rs11752685AC0.110.280.050.35MUS11 tissuesFoxd1,Foxo,HDAC2BACH2intronic
69025747811rs1604831GA0.100.280.050.3510 tissuesMAFKCOMP1BACH2intronic
69025950211rs1604830TC0.080.280.050.35BLD4 altered motifsBACH2intronic
69026049311rs2089126AG0.170.280.050.35BLDFoxl1,GR,Mef2BACH2intronic
69026344011rs1847472CA0.110.280.050.355 tissuesNcx,PLZF,TATA2 hits387 hitsBACH2intronic
69026627111rs56106243CT0.110.280.050.35BLDBLD, THYMBACH2intronic
69026651511rs55885254TC0.090.280.050.35BLDBLD, THYMMybBACH2intronic
69026689011rs62408233GA0.090.280.050.35BLD4 tissuesNkx2,PU.1BACH2intronic
69026866411rs62408235TC0.050.270.010.35BLDBLD, THYM4 altered motifsBACH2intronic
69027042911rs62408236CT0.160.280.050.35BLD, THYMPax-3,Pax-5BACH2intronic
69027062611rs62408237CG0.170.280.050.35BLD7 altered motifsBACH2intronic
69027160011rs55771973TG0.090.280.050.35BLDBLDNF-I,p53BACH2intronic
69027193811rs45553631CT0.160.280.050.35BLDBLD, THYM, SPLN5 tissuesBACH25'-UTR
69027266811rs969577TC0.050.270.010.35BLDBLD, THYM, SPLN4 altered motifsBACH2intronic
69027413111rs905671AT0.160.280.050.35BLD, THYMBLD, MUS, THYMBLD,BLD,THYMKAP1BCL,CEBPGBACH2intronic
69027663411rs6454805AG0.190.280.050.35BLDBLD6 altered motifsBACH2intronic
69027684011rs6899623AG0.190.280.050.35BLDBLDFoxp1,HDAC2BACH2intronic
69027703011rs2325292TC0.170.280.050.35BLDBLDMef2,SIX5BACH2intronic
69027779311rs2134814CG0.120.280.050.35MUSBLD, THYM, MUSHRTEvi-1,OsrBACH2intronic


Query SNP: rs2872507 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
173987114711rs12709365AG0.250.360.310.48BLDBLDBLD6 altered motifs37 hitsZPBP2intronic
173987133011rs13380815AG0.250.360.310.48BLDBLDAP-3,Nkx237 hitsZPBP2intronic
173987395211rs11870965TA0.250.360.310.484 altered motifs1 hit40 hitsZPBP2intronic
173987542111rs10852935CT0.120.350.310.48LNGHoxb61 hit37 hitsZPBP2synonymous
173987620711rs34189114CT0.120.350.310.48AP-137 hitsZPBP2intronic
173987642711rs35736272TC0.110.350.310.48GR,Rhox1137 hitsZPBP2intronic
11rs57151617AC0.250.360.310.48BRST9 altered motifs16 hitsZPBP23'-UTR
173987886311rs9907088GA0.240.360.310.48Foxk1,Myc,Sox1 hit39 hits966bp 3' of ZPBP2
173987911711rs36038753GT0.240.360.320.484 altered motifs37 hits1.2kb 3' of ZPBP2
173987951311rs34074973GAGAG0.120.350.310.485 altered motifs15 hits1.6kb 3' of ZPBP2
173988033311rs9904624AG0.230.360.310.4838 hits2.4kb 3' of ZPBP2
173988386611rs12232497TC0.110.350.310.484 altered motifs39 hits6kb 3' of ZPBP2
173988411011rs12232498TC0.240.360.310.484 altered motifs37 hits6.2kb 3' of ZPBP2
173988428111rs12941333CT0.240.360.310.48Pou2f2,Pou3f337 hits6.4kb 3' of ZPBP2
173988451011rs2872507GA0.240.360.310.48BLD4 altered motifs5 hits22 hits41 hits6.6kb 3' of ZPBP2


Query SNP: rs3766606 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
1796191311rs35675666GT0.260.150.070.1724 tissues50 tissues12 bound proteins6 altered motifs2 hits4 hitsPARK7intronic
1796213711rs3766606GT0.380.150.070.1724 tissues36 tissuesNFKB,POL24H8,POL2NRSF,Sin3Ak-20591 hits8 hitsPARK7intronic


Query SNP: rs3792109 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
223327577111rs3792109GA0.200.360.330.545 altered motifs2 hits1 hit9 hitsSCARNA5intronic


Query SNP: rs5929166 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
X11363428011rs5929166GA0.000.020.000.02IPSC4 altered motifs16kb 5' of RP5-964N17.1


Query SNP: rs7954567 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
12638195911rs7954567GA0.060.220.040.32ESC, IPSCOVRY7 hitsLTBR


Query SNP: rs9279411 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
11rs9279411CAC,CAG8 tissues14 tissues4 tissuesVWA7intronic


Query SNP: rs1847472 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
69024627611rs62408224AG0.090.280.050.35BLD, HRTHoxa13,Hoxb13,Nkx3BACH2intronic
69024669011rs62408225AG0.110.280.040.35BLD19 altered motifsBACH2intronic
69024878311rs905670GA0.090.280.050.35BLD, SKIN, THYM8 altered motifsBACH2intronic
69025545211rs62408227AG0.160.280.050.35BLD, THYMMxi1,SIX5,TBX5BACH2intronic
69025669611rs11752685AC0.110.280.050.35MUS11 tissuesFoxd1,Foxo,HDAC2BACH2intronic
69025747811rs1604831GA0.100.280.050.3510 tissuesMAFKCOMP1BACH2intronic
69025950211rs1604830TC0.080.280.050.35BLD4 altered motifsBACH2intronic
69026049311rs2089126AG0.170.280.050.35BLDFoxl1,GR,Mef2BACH2intronic
69026344011rs1847472CA0.110.280.050.355 tissuesNcx,PLZF,TATA2 hits387 hitsBACH2intronic
69026627111rs56106243CT0.110.280.050.35BLDBLD, THYMBACH2intronic
69026651511rs55885254TC0.090.280.050.35BLDBLD, THYMMybBACH2intronic
69026689011rs62408233GA0.090.280.050.35BLD4 tissuesNkx2,PU.1BACH2intronic
69026866411rs62408235TC0.050.270.010.35BLDBLD, THYM4 altered motifsBACH2intronic
69027042911rs62408236CT0.160.280.050.35BLD, THYMPax-3,Pax-5BACH2intronic
69027062611rs62408237CG0.170.280.050.35BLD7 altered motifsBACH2intronic
69027160011rs55771973TG0.090.280.050.35BLDBLDNF-I,p53BACH2intronic
69027193811rs45553631CT0.160.280.050.35BLDBLD, THYM, SPLN5 tissuesBACH25'-UTR
69027266811rs969577TC0.050.270.010.35BLDBLD, THYM, SPLN4 altered motifsBACH2intronic
69027413111rs905671AT0.160.280.050.35BLD, THYMBLD, MUS, THYMBLD,BLD,THYMKAP1BCL,CEBPGBACH2intronic
69027663411rs6454805AG0.190.280.050.35BLDBLD6 altered motifsBACH2intronic
69027684011rs6899623AG0.190.280.050.35BLDBLDFoxp1,HDAC2BACH2intronic
69027703011rs2325292TC0.170.280.050.35BLDBLDMef2,SIX5BACH2intronic
69027779311rs2134814CG0.120.280.050.35MUSBLD, THYM, MUSHRTEvi-1,OsrBACH2intronic


Query SNP: rs2581828 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
35309913311rs2581828CG0.260.610.730.61ZNF26384 hitsRFT1intronic


Query SNP: rs670523 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
115590894111rs670523AG0.020.540.140.64BLD, SKIN, LNG6 altered motifs1 hit273 hits34 hitsRIT1intronic


Query SNP: rs10181042 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
26099712411rs10181042CT0.570.330.040.41GATA,TCF41 hit6 hits37 hitsPUS10intronic


Query SNP: rs11235667 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
117315265211rs11235667AG0.000.000.110.00BLD10 tissues9 tissuesPOL2,YY1Foxa1 hit10kb 5' of FCHSD2


Query SNP: rs13073817 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
31866534111rs35893269AG0.090.240.020.3429kb 5' of AC105750.1
31866536611rs13073817GA0.090.240.020.34Hmx,Pou1f1,ZID1 hit29kb 5' of AC105750.1


Query SNP: rs17309827 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
6342825511rs6916403CT0.160.370.470.37SKIN14 tissues4 altered motifsSLC22A23intronic
6342880111rs9405202AG0.090.360.470.376 tissuesGISLC22A23intronic
6342889211rs34756502GC0.090.360.470.376 tissuesGCNFSLC22A23intronic
6342906411rs34541033TC0.090.360.470.376 tissuesPou1f1,RFX5,YY1SLC22A23intronic
6342922011rs36052964TA0.100.360.470.374 tissues4 altered motifsSLC22A23intronic
6342989411rs6937621GA0.080.350.470.37BRST, GI, THYM11 altered motifsSLC22A23intronic
6342995711rs6917962AT0.090.360.470.37BRST, GI, THYMHsf,Pax-1SLC22A23intronic
6343004811rs6939192CT0.090.360.470.37GI, THYM8 altered motifsSLC22A23intronic
6343025311rs6938209GA0.090.360.470.37ESDR, GI, THYMSLC22A23intronic
6343035011rs6939748CT0.100.360.470.37ESDR, GI, THYMESC12 altered motifsSLC22A23intronic
6343060111rs6938957GA0.090.350.470.375 tissuesGR,NRSF,TFII-ISLC22A23intronic
6343065511rs6923831TA0.090.360.470.375 tissuesTATASLC22A23intronic
6343296711rs1077845GT0.090.360.470.37SKIN,MUS,SKINNF-ISLC22A23intronic
6343308411rs17309827TG0.090.360.470.37SKIN10 tissuesSKIN,MUS,SKINCTCFERalpha-a1 hitSLC22A23intronic
6343310611rs13206690TG0.090.360.470.37SKIN10 tissuesSKIN,MUS,SKINCTCFTATASLC22A23intronic
6343311311rs13206693TC0.090.360.470.37SKIN10 tissues5 tissuesCTCFMrg1::Hoxa9SLC22A23intronic
6343365611rs4518545TA0.090.360.470.377 tissuesSLC22A23intronic
6343369111rs2326231TG0.090.360.470.377 tissuesBRCA1,Osf2SLC22A23intronic
6343400811rs4959830GA0.090.360.470.37Nrf1SLC22A23intronic
6343426111rs2031895TC0.100.360.470.37ATF3,Zbtb3SLC22A23intronic


Query SNP: rs1736135 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
211543290111rs1736135TC0.070.400.190.405 tissuesIk-3,SP1,Spz12 hits4 hits31kb 5' of AJ006998.2
211543335711rs1297256CT0.550.440.190.405 tissuesESDRERALPHA_A,FOXA15 altered motifs4 hits31kb 5' of AJ006998.2
211543471011rs972010TC0.460.420.190.40BLDMAFF,MAFKBRCA1,Maf,p3004 hits32kb 5' of AJ006998.2
211543543011rs1297259AG0.580.430.190.40BLDBRST4 hits33kb 5' of AJ006998.2
211543590111rs1736018AG0.170.410.190.40BLD14 altered motifs3 hits34kb 5' of AJ006998.2


Query SNP: rs2581828 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
35309913311rs2581828CG0.260.610.730.61ZNF26384 hitsRFT1intronic


Query SNP: rs2797685 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
1781900311rs2797685CT0.330.180.480.197 altered motifs1 hit3 hitsRP3-467L1.4intronic
1782355711rs697689GA0.290.180.480.19HNF4,Nkx2RP3-467L1.4intronic
1782529411rs697691AG0.330.180.480.19DMRT7,Mef2,SRFRP3-467L1.4intronic
1782988111rs2640908CT0.300.180.480.19BLDBLD3 hitsPER3synonymous


Query SNP: rs6545946 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
26248639811rs6545946CT0.370.190.150.224 tissues20 tissues11 tissues4 altered motifs1 hit3 hits4.8kb 5' of Metazoa_SRP


Query SNP: rs7076156 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
106264494611rs10822041TC0.970.810.910.73GATA,Smad,p53ZNF365intronic
106264588611rs10761654AG0.970.810.910.735 altered motifs1 hitZNF365intronic
106264808511rs4237304CT0.970.810.910.73BLDBLD12 altered motifsZNF365intronic
106264809111rs4237305TA0.970.810.910.73BLDBLD10 altered motifsZNF365intronic
106265430011rs7071642GA0.970.810.910.73BLDBLDSKINNrf11 hit1 hitZNF365intronic
106265440411rs7089612TC0.970.810.910.73BLDBLDBLD4 altered motifs1 hitZNF365intronic
106265542411rs7076156AG0.970.810.910.73BLDBLD6 tissues4 bound proteins1 hit1 hitZNF365intronic
106265752911rs7086072CT0.970.810.910.73ESDR, BRN4 altered motifsZNF365intronic
106266452411rs10822047TG0.970.810.910.73Pax-6,Spdef1 hitZNF365intronic


Query SNP: rs7758080 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
614925594311rs7758080AG0.440.260.450.27BLD4 tissuesBLD,LNG5 altered motifs1 hitTAB2


Query SNP: rs11229030 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
115743553611rs11229030CT0.370.710.850.62FAT, LIV, LNGPLCNT1 hit4 hits11 hits8kb 5' of SLC43A3


Query SNP: rs7329174 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
134098158811rs78076494GA0.050.060.260.0214 tissuesFAT, SKIN, GI25 tissuesCEBPB,CMYC,MAXTCF11::MafGELF1intronic
134098397411rs7329174AG0.050.060.260.024 tissues19 tissues14 tissuesRP58,TAL1,ZBRK13 hitsELF1intronic


Query SNP: rs1998598 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
119775851211rs1998598AG0.140.270.190.28BLDSox1 hit1 hitRP11-448G4.4intronic


Query SNP: rs7236492 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
187946061611rs7236492CT0.010.170.000.16BLD, MUS16 tissues16 tissues11 bound proteins4 altered motifs2 hitsNFATC1intronic


Query SNP: rs736289 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
193326615611rs736289TC0.690.300.470.39BLDMUSLBP-1,LXR,NF-I1 hit1 hit34kb 3' of CEBPA


Query SNP: rs1456896 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
75026486511rs1456896CT0.580.720.420.68BLDBLD, THYM5 tissuesHNF42 hits321 hits9.9kb 3' of AC020743.4


Query SNP: rs147856773 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
610866602411rs147856773TTGTG5 tissues4 altered motifsFOXO3intronic


Query SNP: rs2476601 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
111383494611rs2476601AG1.000.961.000.90BRST, BLD, SKIN4 tissuesSTAT3Ets,NERF1a,PU.114 hits3 hits1 hitPTPN22


Query SNP: rs34687326 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
115983012011rs34687326GA0.000.050.000.1113 tissuesESDR,MUS,MUSTATASLAMF8missense


Query SNP: rs6908425 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
62072850011rs6908425TC0.770.790.790.78ESC, IPSC4 altered motifs2 hitsCDKAL1intronic


Query SNP: rs7015630 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
88986369011rs7015630TC0.400.210.250.28Cdx2,Pou2f2,TCF41 hit424 hits3 hits37kb 3' of U6


Query SNP: rs751728 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
63379432711rs1359781TC0.230.330.750.375 tissues7 altered motifs28 hits345bp 3' of MLN
63379625611rs751728CT0.260.340.750.37ESDR, ESC, IPSCDMRT2,Pax-41 hit26 hitsMLNintronic


Query SNP: rs9358372 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
62081235711rs9358372GA0.670.600.470.6411 tissuesCRVXNF-Y,SP11 hit187 hitsCDKAL1intronic


Query SNP: rs12677663 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
87309511211rs12677663GT0.810.600.830.61BRST, OVRY, GI8 tissuesPLZF1 hit9 hitsSBSPON


Query SNP: rs17119 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
61471926511rs17119GA0.520.690.900.77BLD11 tissues7 altered motifs1 hit482 hits73kb 3' of U6


Query SNP: rs4821544 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
223686246111rs4821544TC0.590.260.110.34BLD, FAT, GI6 tissues17 tissues22 bound proteins4 altered motifs1 hit8 hits6 hitsCTA-833B7.2intronic


Query SNP: rs504963 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
194870560811rs504963GA0.520.380.010.46SKIN, GI, LIVKIDEts,GR,Hbp11 hit3 hits25 hitsFUT23'-UTR
194870572111rs632111AG0.450.380.010.46SKIN, GI, LIVSKIN,GI,KID4 altered motifs1 hit1 hit29 hitsFUT23'-UTR


Query SNP: rs568617 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
11658825131-1rs687672TC0.530.790.580.82BLD, SKINOVRY4 hits117 hitsCTSW
11658843591-1rs658938AG0.530.790.570.8211 tissuesBLD,BLDNF-I107 hitsFIBPintronic
116588577111rs568617CT0.480.210.430.185 tissues6 tissuesBDP1,ERalpha-a821 hits113 hitsFIBPintronic
116588583811rs694994TC0.470.210.430.185 tissuesBLD,BLD,MUSGCNF,Hsf,KAP110 hits115 hitsFIBPintronic
116588719411rs677931GC0.480.220.430.186 tissues19 tissuesGI,LNGMaf,NRSF106 hitsFIBPintronic
116588731211rs693824AG0.480.210.430.186 tissues19 tissuesESDR17 altered motifs106 hitsFIBPintronic


Query SNP: rs61839660 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
10605273411rs61839660CT0.000.050.000.08BLD, THYM12 tissues11 tissues11 bound proteins8 altered motifs1 hitIL2RAintronic


Query SNP: rs6837335 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
44836122811rs7438704AG0.440.540.480.645 tissues15 tissues6 tissuesFoxa,GCNF,STAT228 hits3 hitsSLAIN2intronic
44836196611rs6837335AG0.440.540.480.648 tissuesHbp1,RORalpha11 hit3 hitsSLAIN2intronic


Query SNP: rs71559680 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
62143049611rs71559680CTAGCCATHmbox1,TATA75kb 3' of RP1-135L22.1


Query SNP: rs7705924 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
510258521311rs10574546TTCT0.090.100.020.058 altered motifsLINC00492intronic
510259065911rs13361792GA0.130.100.020.05ESC, IPSCBRST,SKIN,BRSTDMRT5,Gm397,Mtf1LINC00492intronic
510259073311rs13357560CT0.130.100.020.05SKIN,BRST6 altered motifsLINC00492intronic
510259124611rs6870270GC0.130.100.020.05IPSC, BRST6 altered motifsLINC00492intronic
510259344511rs6885940GT0.080.100.020.05LIVLINC00492intronic
510259815311rs77696592GA0.090.090.020.054 altered motifsLINC00492intronic
510260160911rs10059604GA0.090.090.020.0513 altered motifsLINC00492intronic
510261109411rs7705924AG0.080.100.020.054 altered motifs1 hitLINC00492intronic
510261198811rs10069964GA0.140.100.020.05SKINLUN-1LINC00492intronic
510262822411rs112913025CA0.140.100.020.0510 tissuesMef2,TFIIALINC00491
510262839811rs74729906CT0.140.100.020.05STRM10 tissues4 altered motifsLINC00491


Query SNP: rs10486483 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
72684626611rs10270187CG0.140.200.110.224 altered motifs13 hitsSKAP2intronic
72684684911rs10251839CT0.140.200.110.22Myf11 hitsSKAP2intronic
72684799611rs3801812CT0.140.200.110.22Pax-413 hitsSKAP2intronic
72684832311rs10272190TA0.140.200.110.224 altered motifs13 hitsSKAP2intronic
72684851011rs66552416TCT0.150.200.110.22Pou6f1,TEF11 hitsSKAP2intronic
72684853611rs10272457TC0.140.200.110.228 altered motifs13 hitsSKAP2intronic
72684865811rs10272603TC0.140.200.110.22RXRA11 hitsSKAP2intronic
72684929911rs6461979TC0.010.190.110.225 altered motifs14 hitsSKAP2intronic
72685024311rs17376018AG0.180.200.110.225 tissuesSKIN,BLDCEBPB,p30011 hitsSKAP2intronic
72685082711rs4722647GC0.150.190.110.22FAT, BLD, SKINBLDCHD2,Pax-411 hitsSKAP2intronic
72685095311rs3934268GC0.150.200.110.22FAT, BLD, SKIN13 altered motifs11 hitsSKAP2intronic
72685105311rs2031811TC0.150.200.110.22BLD, SKIN6 altered motifs14 hitsSKAP2intronic
72685139711rs2030136TC0.150.200.100.224 altered motifs13 hitsSKAP2intronic
72685204611rs7804356TC0.150.200.110.22GR1 hit3 hits14 hitsSKAP2intronic
72685270611rs73069533GA0.010.190.110.22Ik-2,Irf11 hitsSKAP2intronic
72685282111rs10486483GA0.150.200.110.224 altered motifs1 hit225 hits14 hitsSKAP2intronic
72685291211rs3801810GA0.150.200.110.2210 altered motifs14 hitsSKAP2intronic
72685369811rs3823928TC0.150.200.110.224 tissuesADRL5 altered motifs11 hitsSKAP2intronic
72685373811rs7791513AC0.150.200.110.224 tissuesBLD,ADRLUF1H3BETA14 hitsSKAP2intronic
72685390511rs3213853TC0.150.200.110.227 tissues34 tissues5 bound proteins11 hitsSKAP2intronic
72685450411rs6461980TG0.150.200.110.226 tissuesLNG,MUS,BRSTEvi-1,GATA,IRC90081411 hitsSKAP2intronic
72685524111rs12536145AT0.150.200.110.22BLD, BRST8 tissues10 tissuesPou1f1,Pou3f3,TATA11 hitsSKAP2intronic
72685546111rs10256250AT0.150.200.110.2211 tissuesAP-114 hitsSKAP2intronic
72685583711rs3801809GA0.150.200.110.226 tissues5 tissues6 tissuesEts,SIX5,YY111 hitsSKAP2intronic
72685619311rs3839808TAT0.150.200.110.227 tissues4 tissues4 tissues6 altered motifs10 hitsSKAP2intronic
72685693611rs3801808TA0.150.200.110.227 tissues7 tissues4 tissuesGATA14 hitsSKAP2intronic
72685782011rs3801807TC0.150.200.110.2217 tissues10 tissues33 tissuesPax-4,Zic2 hits14 hitsSKAP2intronic


Query SNP: rs10734105 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
1013137385611rs10734105GA0.500.670.860.66p3001 hit62kb 5' of TCERG1L


Query SNP: rs10775412 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
172754200711rs10775412AC0.210.280.690.32LNG,PLCNT,CRVXNRSFSP1,Zfp4107 hitsKSR1intronic


Query SNP: rs10801047 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
119158897111rs1954603CT0.560.810.870.92IPSCBRCA11 hit270kb 3' of RP11-541F9.1
119159022611rs10801047AT0.570.810.870.92Evi-1,Foxp1,TATA1 hit2 hits268kb 3' of RP11-541F9.1
11915989001-1rs4845287TC0.370.170.130.081 hit260kb 3' of RP11-541F9.1
11916015781-1rs1892290CT0.370.170.130.08BRST, BLDTCF4257kb 3' of RP11-541F9.1
11916024271-1rs7520824TC0.370.170.130.08BLD256kb 3' of RP11-541F9.1
11916055011-1rs58591914GA0.390.170.130.0820 altered motifs253kb 3' of RP11-541F9.1
11916067741-1rs16833617AG0.390.170.130.08ESCFoxa,Foxj2,Foxp1252kb 3' of RP11-541F9.1
11916084641-1rs6665749AG0.370.170.130.084 tissues6 tissuesFOSL221 altered motifs250kb 3' of RP11-541F9.1
11916144971-1rs12033585GA0.470.170.130.084 altered motifs244kb 3' of RP11-541F9.1


Query SNP: rs11871801 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
174241875411rs11871801AC0.300.160.100.24FAT, VAS, GI10 tissuesSKIN1 hit23 hitsPTRFintronic


Query SNP: rs13204048 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
6342017211rs13204048TC0.260.360.470.3815 tissues28 tissues5 bound proteinsMafSLC22A23intronic


Query SNP: rs2542151 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
18127748951-1rs888270GA0.010.110.160.15BLD, THYMBLDDobox410 hitsRP11-973H7.1
181277559211rs2847260CT0.800.860.840.854 tissuesBLD,THYM8 altered motifs10 hitsRP11-973H7.1
181277585211rs2542147GT0.800.860.840.855 tissues5 tissuesSIX5,p30010 hitsRP11-973H7.1
181277757411rs2542148CG0.820.860.840.8514 tissuesLNG4 tissues11 hits1.7kb 5' of RP11-973H7.1
181277871611rs2847278CT0.830.870.840.858 altered motifs12 hits2.8kb 5' of RP11-973H7.1
181277901911rs2542149GA0.830.870.840.85IPSCCTCF,RAD21Zfx12 hits3.1kb 5' of RP11-973H7.1
181277934311rs2847280AG0.830.870.840.85IPSCESDR,IPSC5 altered motifs12 hits3.4kb 5' of RP11-973H7.1
181277976411rs2542150GC0.830.870.840.85IPSCIPSCAP-1,NRSF,Pax-812 hits3.8kb 5' of RP11-973H7.1
181277994811rs2542151GT0.830.870.840.85Egr-1,Ets,GR6 hits12 hits4kb 5' of RP11-973H7.1


Query SNP: rs314313 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
710082574311rs314313TC0.310.200.030.3222 tissuesBLD, THYM, SPLN11 tissuesPU17 altered motifs2 hits11 hitsEPHB4intronic


Query SNP: rs3851228 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
611151852411rs35876947TCT0.050.060.000.06BLD7 altered motifsTRAF3IP2-AS1intronic
611152144411rs71562296GA0.170.080.000.06BLDHand1,Mrg1::Hoxa9,Myb14 hitsTRAF3IP2-AS1intronic
611152182211rs6939657GA0.170.080.000.064 tissuesOVRY6 altered motifs16 hitsTRAF3IP2-AS1intronic
611152300411rs34863440AG0.170.080.000.067 tissues7 altered motifs15 hitsTRAF3IP2-AS1intronic
611152582211rs35931461GA0.010.060.000.06BRN6 altered motifs8 hitsTRAF3IP2-AS1intronic
611152698811rs3851228AT0.170.080.000.06BLDDMRT3,Pbx-11 hit382 hits16 hitsTRAF3IP2-AS1intronic


Query SNP: rs4703855 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
57239807211rs4703855CT0.040.270.590.347 tissuesESDR,ESDR,IPSCE4BP4,NRSF2 hits38kb 3' of PTCD2


Query SNP: rs4820425 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
224103533811rs4820425CA0.120.540.060.31BLDLBP-1,Zfp4101 hit35 hits10kb 5' of Y_RNA


Query SNP: rs4976646 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
517736156911rs4976646TC0.600.360.270.34BLD, SKIN8 tissuesBLD,BLD4 altered motifs225 hits33 hitsRGS14intronic
517736162111rs4976647AC0.360.350.260.34BLD9 tissuesBLDTHAP131 hitsRGS14intronic


Query SNP: rs915286 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
134012185511rs915286GA0.390.420.250.556 tissues4 tissuesLUN-1,Obox6,PU.160kb 5' of LINC00332


Query SNP: rs13126505 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
410194414711rs13126505GA0.000.030.000.06ESC, ESDR1 hit528 hitsBANK1intronic


Query SNP: rs3091316 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
173426664611rs3091315AG0.410.470.620.32FAT, BLD5 altered motifs1 hit363 hits3.6kb 5' of CCL7
173426695511rs3091316GA0.260.460.620.32BLDGmeb1,Mef2,Pou2f22 hits3.3kb 5' of CCL7


Query SNP: rs3091338 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
513206704511rs3091338CT0.130.310.000.37PPAR,RXRA1 hit2 hits49 hits3.8kb 3' of IL3


Query SNP: rs6568421 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
610598715011rs6568421AG0.170.190.000.296 tissues5 tissuesNkx22 hits82kb 3' of 7SK
610598739411rs7746082GC0.010.180.000.295 tissuesMUS,MUS,SKINCphx,HNF41 hit272 hits83kb 3' of 7SK


Query SNP: rs75764599 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
74585965111rs75764599GA0.000.030.000.0210 altered motifs16kb 3' of U6


Query SNP: rs80244186 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
134234372511rs80244186TC0.040.110.140.12BLDIPSC4 altered motifs20kb 3' of AKAP11


Query SNP: rs9297145 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
79916149411rs9297145CA0.460.730.900.71LNGHoxa13,Hoxb131 hit977 hits2 hits12kb 3' of KPNA7


Query SNP: rs9858542 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
34965936411rs11718165AG0.250.230.060.33IPSC, MUSEvi-1,p30012 hits63 hitsBSNintronic
34966002611rs9836291GA0.350.230.060.33IPSC, ADRL, PANCMUS5 altered motifs62 hitsBSNintronic
34966455011rs9858542GA0.240.230.060.334 tissuesMrg3 hits12 hits63 hitsBSNsynonymous
34966807911rs9823546TA0.240.230.060.3314 tissues62 hitsBSN3'-UTR


Query SNP: rs9858542 and variants with r2 >= 1
chrpos (hg38)LD
(r²)
LD
(D')
variantRefAltAFR
freq
AMR
freq
ASN
freq
EUR
freq
SiPhy
cons
Promoter
histone marks
Enhancer
histone marks
DNAseProteins
bound
Motifs
changed
NHGRI/EBI
GWAS hits
GRASP QTL
hits
Selected eQTL
hits
GENCODE
genes
dbSNP
func annot
34965936411rs11718165AG0.250.230.060.33IPSC, MUSEvi-1,p30012 hits63 hitsBSNintronic
34966002611rs9836291GA0.350.230.060.33IPSC, ADRL, PANCMUS5 altered motifs62 hitsBSNintronic
34966455011rs9858542GA0.240.230.060.334 tissuesMrg3 hits12 hits63 hitsBSNsynonymous
34966807911rs9823546TA0.240.230.060.3314 tissues62 hitsBSN3'-UTR


Query SNP enhancer summary:
NOTE: Background for GWAS SNPs is still based on Haploreg v4.0 and will be updated to reflect v4.1

CellObservedExpected
(all SNPs)
Expected
(GWAS SNPs)
Binomial p
(all SNPs)
Binomial p
(GWAS SNPs)
E017 LNG.IMR90 (IMR90 fetal lung fibroblasts Cell Line)5118.233.800.002371
E002 ESC.WA7 (ES-WA7 Cells)125.79.90.0131450.29051
E008 ESC.H9 (H9 Cells)12712.80.0520920.631055
E001 ESC.I3 (ES-I3 Cells)2715.925.40.005870.400282
E015 ESC.HUES6 (HUES6 Cells)2216.324.70.0990330.742042
E014 ESC.HUES48 (HUES48 Cells)2515.221.90.0114150.274693
E016 ESC.HUES64 (HUES64 Cells)2314.623.40.0237520.564674
E003 ESC.H1 (H1 Cells)2113.323.30.0294160.720159
E024 ESC.4STAR (ES-UCSF4 Cells)3516.228.62.3E-50.125797
E020 IPSC.20B (iPS-20b Cells)2012180.0192090.343459
E019 IPSC.18 (iPS-18 Cells)2615.322.50.0067460.250903
E018 IPSC.15b (iPS-15b Cells)2514.523.10.0066530.371458
E021 IPSC.DF.6.9 (iPS DF 6.9 Cells)206.814.42.3E-50.091583
E022 IPSC.DF.19.11 (iPS DF 19.11 Cells)3715.829.42.0E-60.090167
E007 ESDR.H1.NEUR.PROG (H1 Derived Neuronal Progenitor Cultured Cells)178.116.30.0039870.461477
E009 ESDR.H9.NEUR.PROG (H9 Derived Neuronal Progenitor Cultured Cells)1311.520.60.3664720.972895
E010 ESDR.H9.NEUR (H9 Derived Neuron Cultured Cells)2214.524.20.0363840.705236
E013 ESDR.CD56.MESO (hESC Derived CD56+ Mesoderm Cultured Cells)4013.225.800.004327
E012 ESDR.CD56.ECTO (hESC Derived CD56+ Ectoderm Cultured Cells)2712.221.90.0001360.154616
E011 ESDR.CD184.ENDO (hESC Derived CD184+ Endoderm Cultured Cells)3013.224.83.6E-50.164004
E004 ESDR.H1.BMP4.MESO (H1 BMP4 Derived Mesendoderm Cultured Cells)177.412.60.0015930.132859
E005 ESDR.H1.BMP4.TROP (H1 BMP4 Derived Trophoblast Cultured Cells)4214.929.600.015023
E006 ESDR.H1.MSC (H1 Derived Mesenchymal Stem Cells)5316.129.402.7E-5
E062 BLD.PER.MONUC.PC (Primary mononuclear cells from peripheral blood)464.81100
E034 BLD.CD3.PPC (Primary T cells from peripheral blood)6814.523.400
E045 BLD.CD4.CD25I.CD127.TMEMPC (Primary T cells effector/memory enriched from peripheral blood)436.211.400
E033 BLD.CD3.CPC (Primary T cells from cord blood)5010.216.600
E044 BLD.CD4.CD25.CD127M.TREGPC (Primary T regulatory cells from peripheral blood)438.21500
E043 BLD.CD4.CD25M.TPC (Primary T helper cells from peripheral blood)741422.900
E039 BLD.CD4.CD25M.CD45RA.NPC (Primary T helper naive cells from peripheral blood)5312.519.600
E041 BLD.CD4.CD25M.IL17M.PL.TPC (Primary T helper cells PMA-I stimulated)7014.622.700
E042 BLD.CD4.CD25M.IL17P.PL.TPC (Primary T helper 17 cells PMA-I stimulated)5111.120.400
E040 BLD.CD4.CD25M.CD45RO.MPC (Primary T helper memory cells from peripheral blood 1)5611.920.300
E037 BLD.CD4.MPC (Primary T helper memory cells from peripheral blood 2)6113.322.300
E048 BLD.CD8.MPC (Primary T CD8+ memory cells from peripheral blood)5610.318.300
E038 BLD.CD4.NPC (Primary T helper naive cells from peripheral blood)591118.100
E047 BLD.CD8.NPC (Primary T CD8+ naive cells from peripheral blood)7112.422.300
E029 BLD.CD14.PC (Primary monocytes from peripheral blood)951831.800
E031 BLD.CD19.CPC (Primary B cells from cord blood)5311.119.300
E035 BLD.CD34.PC (Primary hematopoietic stem cells)6012.122.300
E051 BLD.MOB.CD34.PC.M (Primary hematopoietic stem cells G-CSF-mobilized Male)5516.528.202.0E-6
E050 BLD.MOB.CD34.PC.F (Primary hematopoietic stem cells G-CSF-mobilized Female)7417.230.500
E036 BLD.CD34.CC (Primary hematopoietic stem cells short term culture)7215.728.900
E032 BLD.CD19.PPC (Primary B cells from peripheral blood)7616.127.900
E046 BLD.CD56.PC (Primary Natural Killer cells from peripheral blood)7714.224.700
E030 BLD.CD15.PC (Primary neutrophils from peripheral blood)6712.220.300
E026 STRM.MRW.MSC (Bone Marrow Derived Cultured Mesenchymal Stem Cells)4714.625.907.1E-5
E049 STRM.CHON.MRW.DR.MSC (Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells)6217.332.401.0E-6
E025 FAT.ADIP.DR.MSC (Adipose Derived Mesenchymal Stem Cell Cultured Cells)6923.639.404.0E-6
E023 FAT.MSC.DR.ADIP (Mesenchymal Stem Cell Derived Adipocyte Cultured Cells)3817.629.71.0E-50.072582
E052 MUS.SAT (Muscle Satellite Cultured Cells)4216.428.700.009208
E055 SKIN.PEN.FRSK.FIB.01 (Foreskin Fibroblast Primary Cells skin01)4317.832.300.035035
E056 SKIN.PEN.FRSK.FIB.02 (Foreskin Fibroblast Primary Cells skin02)3212.323.61.0E-60.052806
E059 SKIN.PEN.FRSK.MEL.01 (Foreskin Melanocyte Primary Cells skin01)2810.119.32.0E-60.032633
E061 SKIN.PEN.FRSK.MEL.03 (Foreskin Melanocyte Primary Cells skin03)3117.827.90.0022780.300479
E057 SKIN.PEN.FRSK.KER.02 (Foreskin Keratinocyte Primary Cells skin02)3316.128.69.7E-50.218402
E058 SKIN.PEN.FRSK.KER.03 (Foreskin Keratinocyte Primary Cells skin03)2516.928.90.0357850.797716
E028 BRST.HMEC.35 (Breast variant Human Mammary Epithelial Cells (vHMEC))4917.831.600.001655
E027 BRST.MYO (Breast Myoepithelial Primary Cells)482139.800.100526
E054 BRN.GANGEM.DR.NRSPHR (Ganglion Eminence derived primary cultured neurospheres)1811.217.60.0342220.492469
E053 BRN.CRTX.DR.NRSPHR (Cortex derived primary cultured neurospheres)2815.924.50.0030770.25882
E112 THYM (Thymus)246.913.500.00543
E093 THYM.FET (Fetal Thymus)5715.128.901.0E-6
E071 BRN.HIPP.MID (Brain Hippocampus Middle)3014.325.30.0001410.189322
E074 BRN.SUB.NIG (Brain Substantia Nigra)2212.823.60.0109190.65975
E068 BRN.ANT.CAUD (Brain Anterior Caudate)2911.921.41.3E-50.062792
E069 BRN.CING.GYR (Brain Cingulate Gyrus)141221.20.3150150.963627
E072 BRN.INF.TMP (Brain Inferior Temporal Lobe)1711.319.30.0667430.733751
E067 BRN.ANG.GYR (Brain Angular Gyrus)229.917.40.0005320.158608
E073 BRN.DL.PRFRNTL.CRTX (Brain Dorsolateral Prefrontal Cortex)208.817.30.0006690.282781
E070 BRN.GRM.MTRX (Brain Germinal Matrix)139.715.70.1791170.79381
E082 BRN.FET.F (Fetal Brain Female)117.211.70.1126770.619479
E081 BRN.FET.M (Fetal Brain Male)1314.320.30.6755410.96856
E063 FAT.ADIP.NUC (Adipose Nuclei)5416.232.200.000143
E100 MUS.PSOAS (Psoas Muscle)318.815.300.000196
E108 MUS.SKLT.F (Skeletal Muscle Female)4416.33000.007494
E107 MUS.SKLT.M (Skeletal Muscle Male)4316.429.900.010894
E089 MUS.TRNK.FET (Fetal Muscle Trunk)3817.832.11.2E-50.159373
E090 MUS.LEG.FET (Fetal Muscle Leg)4423.243.74.2E-50.50255
E083 HRT.FET (Fetal Heart)3221.335.70.0154480.765001
E104 HRT.ATR.R (Right Atrium)2410.5200.0001870.209671
E095 HRT.VENT.L (Left Ventricle)3314.226.19.0E-60.100517
E105 HRT.VNT.R (Right Ventricle)2611.221.38.4E-50.175844
E065 VAS.AOR (Aorta)94.39.40.0292590.593182
E078 GI.DUO.SM.MUS (Duodenum Smooth Muscle)218157.1E-50.08092
E076 GI.CLN.SM.MUS (Colon Smooth Muscle)3312.923.31.0E-60.030084
E103 GI.RECT.SM.MUS (Rectal Smooth Muscle)288.616.300.004288
E111 GI.STMC.MUS (Stomach Smooth Muscle)249.516.74.0E-50.049304
E092 GI.STMC.FET (Fetal Stomach)3514.928.74.0E-60.132255
E085 GI.S.INT.FET (Fetal Intestine Small)4115.727.800.00878
E084 GI.L.INT.FET (Fetal Intestine Large)3515.127.35.0E-60.081382
E109 GI.S.INT (Small Intestine)335.910.700
E106 GI.CLN.SIG (Sigmoid Colon)388.21704.0E-6
E075 GI.CLN.MUC (Colonic Mucosa)185.310.71.0E-50.023413
E101 GI.RECT.MUC.29 (Rectal Mucosa Donor 29)376.813.400
E102 GI.RECT.MUC.31 (Rectal Mucosa Donor 31)3810.720.400.000215
E110 GI.STMC.MUC (Stomach Mucosa)4414.625.200.000267
E077 GI.DUO.MUC (Duodenum Mucosa)4510.820.801.0E-6
E079 GI.ESO (Esophagus)338.61700.000282
E094 GI.STMC.GAST (Gastric)257.815.300.012087
E099 PLCNT.AMN (Placenta Amnion)399.519.805.6E-5
E086 KID.FET (Fetal Kidney)13713.70.0264030.618348
E088 LNG.FET (Fetal Lung)3016.630.50.0014820.562196
E097 OVRY (Ovary)2010.919.60.0080290.499693
E087 PANC.ISLT (Pancreatic Islets)105.28.20.0394490.30905
E080 ADRL.GLND.FET (Fetal Adrenal Gland)4820.137.500.046379
E091 PLCNT.FET (Placenta)661937.405.0E-6
E066 LIV.ADLT (Liver)491628.600.00018
E098 PANC (Pancreas)2912.921.65.9E-50.067321
E096 LNG (Lung)2810.2202.0E-60.047076
E113 SPLN (Spleen)631326.200
E114 LNG.A549.ETOH002.CNCR (A549 EtOH 0.02pct Lung Carcinoma Cell Line)3012.723.11.7E-50.089033
E115 BLD.DND41.CNCR (Dnd41 TCell Leukemia Cell Line)459.813.100
E116 BLD.GM12878 (GM12878 Lymphoblastoid Cells)5412.219.300
E117 CRVX.HELAS3.CNCR (HeLa-S3 Cervical Carcinoma Cell Line)3011.621.53.0E-60.043162
E118 LIV.HEPG2.CNCR (HepG2 Hepatocellular Carcinoma Cell Line)5420.634.100.000574
E119 BRST.HMEC (HMEC Mammary Epithelial Primary Cells)4317.33000.011813
E120 MUS.HSMM (HSMM Skeletal Muscle Myoblasts Cells)4113.226.600.0042
E121 MUS.HSMMT (HSMM cell derived Skeletal Muscle Myotubes Cells)4213.223.900.000322
E122 VAS.HUVEC (HUVEC Umbilical Vein Endothelial Primary Cells)2713.522.60.0006440.194495
E123 BLD.K562.CNCR (K562 Leukemia Cells)2312.920.30.0064340.302529
E124 BLD.CD14.MONO (Monocytes-CD14+ RO01746 Primary Cells)6912.120.300
E125 BRN.NHA (NH-A Astrocytes Primary Cells)3712.523.500.004699
E126 SKIN.NHDFAD (NHDF-Ad Adult Dermal Fibroblast Primary Cells)3817.430.18.0E-60.083617
E127 SKIN.NHEK (NHEK-Epidermal Keratinocyte Primary Cells)361626.67.0E-60.042441
E128 LNG.NHLF (NHLF Lung Fibroblast Primary Cells)3511.722.300.006385
E129 BONE.OSTEO (Osteoblast Primary Cells)4715.626.900.00016