HaploReg v4.1 |
HaploReg is a tool for exploring annotations of the noncoding genome at variants on haplotype blocks, such as candidate regulatory SNPs at disease-associated loci. Using LD information from the 1000 Genomes Project, linked SNPs and small indels can be visualized along with chromatin state and protein binding annotation from the Roadmap Epigenomics and ENCODE projects, sequence conservation across mammals, the effect of SNPs on regulatory motifs, and the effect of SNPs on expression from eQTL studies. HaploReg is designed for researchers developing mechanistic hypotheses of the impact of non-coding variants on clinical phenotypes and normal variation.
Update 2015.11.05: Version 4.1 GWAS and eQTL have been updated; a simpler pruning strategy is applied when combining GWAS; and links out to other NHGRI/EBI GWAS hits and GRASP QTL hits are provided.
Update 2015.09.15: Version 4.0 now includes many recent eQTL results including the GTEx pilot, four different options for defining enhancers using Roadmap Epigenomics data, and a complete set of source files for download and local analysis. Older versions available: v3, v2, v1.
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 50729867 | 1 | 1 | rs2066847 | G | GC | 0.01 | 0.01 | 0.00 | 0.01 | 4 altered motifs | 3 hits | NOD2 | frameshift |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 67215986 | 1 | 1 | rs7517847 | T | G | 0.20 | 0.56 | 0.45 | 0.43 | 4 altered motifs | 2 hits | 3 hits | IL23R | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 50712015 | 1 | 1 | rs2066844 | C | T | 0.00 | 0.03 | 0.00 | 0.05 | MUS, GI | 14 tissues | 13 tissues | NRSF | 7 altered motifs | 1 hit | NOD2 | missense |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 67234232 | 1 | 1 | rs79755370 | C | A | 0.01 | 0.06 | 0.00 | 0.06 | 29 tissues | 4 bound proteins | IL23R | intronic | |||||||
| 1 | 67240275 | 1 | 1 | rs11209026 | G | A | 0.01 | 0.06 | 0.00 | 0.06 | GR | 15 hits | 3 hits | IL23R | missense | ||||||
| 1 | 67242007 | 1 | 1 | rs11581607 | G | A | 0.01 | 0.06 | 0.00 | 0.06 | 4 altered motifs | IL23R | intronic | ||||||||
| 1 | 67247663 | 1 | 1 | rs113935720 | T | C | 0.01 | 0.06 | 0.00 | 0.06 | 4 altered motifs | IL23R | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 40405948 | 1 | 1 | rs6890268 | A | T | 0.63 | 0.49 | 0.15 | 0.58 | BLD | 12 tissues | BLD | Evi-1 | 1 hit | 86kb 3' of AC108105.1 | |||||
| 5 | 40406028 | 1 | 1 | rs6871591 | T | A | 0.62 | 0.49 | 0.15 | 0.58 | BLD | 12 tissues | BLD,MUS | 4 altered motifs | 1 hit | 86kb 3' of AC108105.1 | |||||
| 5 | 40410482 | 1 | 1 | rs11742570 | T | C | 0.63 | 0.49 | 0.15 | 0.58 | 7 tissues | 17 tissues | 28 tissues | GATA2 | 3 hits | 926 hits | 1 hit | 90kb 3' of AC108105.1 | |||
| 5 | 40410833 | 1 | 1 | rs6451493 | G | T | 0.63 | 0.49 | 0.15 | 0.58 | 6 tissues | 16 tissues | 19 tissues | 4 bound proteins | CEBPB,HNF1,Pou2f2 | 1 hit | 1 hit | 90kb 3' of AC108105.1 | |||
| 5 | 40411189 | 1 | 1 | rs6451494 | T | C | 0.63 | 0.49 | 0.15 | 0.58 | 5 tissues | 17 tissues | 19 tissues | 4 bound proteins | Mef2,Sox | 1 hit | 91kb 3' of AC108105.1 | ||||
| 5 | 40411808 | 1 | 1 | rs6883964 | A | G | 0.63 | 0.49 | 0.15 | 0.58 | BLD, SKIN | 7 tissues | SKIN,BRST | 12 altered motifs | 1 hit | 91kb 3' of AC108105.1 | |||||
| 5 | 40412093 | 1 | 1 | rs12655810 | T | C | 0.63 | 0.49 | 0.15 | 0.58 | BLD | 5 tissues | 8 altered motifs | 1 hit | 92kb 3' of AC108105.1 | ||||||
| 5 | 40412364 | 1 | 1 | rs6888952 | A | G | 0.63 | 0.49 | 0.15 | 0.58 | BLD | 4 tissues | 7 altered motifs | 1 hit | 92kb 3' of AC108105.1 | ||||||
| 5 | 40412842 | 1 | 1 | rs10473191 | T | A | 0.63 | 0.49 | 0.15 | 0.58 | MUS | 13 altered motifs | 1 hit | 92kb 3' of AC108105.1 | |||||||
| 5 | 40414317 | 1 | 1 | rs1445004 | C | T | 0.63 | 0.49 | 0.15 | 0.58 | SKIN | BHLHE40,Gm397 | 1 hit | 94kb 3' of AC108105.1 | |||||||
| 5 | 40414965 | 1 | 1 | rs1992660 | C | T | 0.63 | 0.49 | 0.15 | 0.58 | SKIN | 6 altered motifs | 1 hit | 1 hit | 95kb 3' of AC108105.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 233248491 | 1 | 1 | rs11680089 | G | C | 0.28 | 0.39 | 0.33 | 0.53 | BRST, BLD, SKIN | 7 altered motifs | 8 hits | ATG16L1 | |||||||
| 2 | 233248612 | 1 | 1 | rs11680130 | G | A | 0.25 | 0.38 | 0.33 | 0.53 | BLD, SKIN | 8 hits | ATG16L1 | ||||||||
| 2 | 233249042 | 1 | 1 | rs56049444 | C | T | 0.17 | 0.37 | 0.33 | 0.53 | BLD | BLD, THYM | 5 tissues | 8 hits | ATG16L1 | ||||||
| 2 | 233249087 | 1 | 1 | rs55835501 | C | T | 0.25 | 0.39 | 0.33 | 0.53 | BLD | BLD, THYM | 7 tissues | AIRE | 7 hits | ATG16L1 | |||||
| 2 | 233249095 | 1 | 1 | rs56227616 | T | C | 0.20 | 0.38 | 0.33 | 0.53 | BLD | BLD, THYM | 8 tissues | RFX5 | 7 hits | ATG16L1 | |||||
| 2 | 233250193 | 1 | 1 | rs10210302 | C | T | 0.25 | 0.38 | 0.33 | 0.53 | VAS | Hlx1 | 1 hit | 2 hits | 9 hits | ATG16L1 | |||||
| 2 | 233251699 | 1 | 1 | rs2289477 | T | G | 0.26 | 0.39 | 0.33 | 0.53 | 24 tissues | 53 tissues | 33 bound proteins | AP-2,Pbx3,Znf143 | 7 hits | ATG16L1 | 5'-UTR | ||||
| 2 | 233252802 | 1 | 1 | rs6752107 | G | A | 0.26 | 0.39 | 0.33 | 0.53 | 21 tissues | 7 tissues | 1 hit | 10 hits | ATG16L1 | intronic | |||||
| 2 | 233252937 | 1 | 1 | rs6738490 | T | C | 0.26 | 0.39 | 0.33 | 0.53 | 21 tissues | 7 tissues | BLD | GATA1 | 8 hits | ATG16L1 | intronic | ||||
| 2 | 233253123 | 1 | 1 | rs6431654 | C | T | 0.26 | 0.39 | 0.33 | 0.53 | 19 tissues | 12 tissues | BLD,LNG,BLD | GATA1 | Nanog | 1 hit | 10 hits | ATG16L1 | intronic | ||
| 2 | 233253507 | 1 | 1 | rs6745825 | A | G | 0.26 | 0.39 | 0.33 | 0.53 | BLD, LIV | 19 tissues | GI | 6 altered motifs | 8 hits | ATG16L1 | intronic | ||||
| 2 | 233255037 | 1 | 1 | rs6705964 | G | C | 0.25 | 0.39 | 0.33 | 0.53 | BLD | 6 tissues | 4 altered motifs | 9 hits | ATG16L1 | intronic | |||||
| 2 | 233258588 | 1 | 1 | rs6431660 | A | G | 0.17 | 0.36 | 0.33 | 0.53 | BLD | 8 altered motifs | 11 hits | ATG16L1 | intronic | ||||||
| 2 | 233258775 | 1 | 1 | rs6431661 | C | T | 0.21 | 0.36 | 0.33 | 0.53 | BLD, STRM | AIRE | 8 hits | ATG16L1 | intronic | ||||||
| 2 | 233259235 | 1 | 1 | rs34123137 | T | A | 0.20 | 0.36 | 0.33 | 0.53 | BLD, STRM, GI | 5 altered motifs | 8 hits | ATG16L1 | intronic | ||||||
| 2 | 233260144 | 1 | 1 | rs35300242 | G | A | 0.20 | 0.36 | 0.33 | 0.53 | 4 tissues | BLD | 15 altered motifs | 8 hits | ATG16L1 | intronic | |||||
| 2 | 233261176 | 1 | 1 | rs10164737 | C | T | 0.10 | 0.36 | 0.33 | 0.53 | 9 hits | ATG16L1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 32619077 | 1 | 1 | rs9271366 | G | A | 0.83 | 0.92 | 0.84 | 0.87 | Nanog | 6 hits | 122 hits | 261 hits | 9.1kb 5' of HLA-DQA1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 233263542 | 1 | 1 | rs12162308 | C | G | 0.25 | 0.37 | 0.33 | 0.53 | PLCNT | Whn | 11 hits | ATG16L1 | intronic | ||||||
| 2 | 233264200 | 1 | 1 | rs6708373 | A | G | 0.25 | 0.38 | 0.33 | 0.53 | LIV | 11 hits | ATG16L1 | intronic | |||||||
| 2 | 233264269 | 1 | 1 | rs10165561 | G | C | 0.25 | 0.38 | 0.33 | 0.53 | Ets,LUN-1 | 11 hits | ATG16L1 | intronic | |||||||
| 2 | 233264857 | 1 | 1 | rs12994997 | G | A | 0.25 | 0.37 | 0.33 | 0.53 | ESDR, LIV | 1 hit | 1655 hits | 11 hits | ATG16L1 | intronic | |||||
| 2 | 233267060 | 1 | 1 | rs13009506 | G | T | 0.20 | 0.36 | 0.33 | 0.53 | BLD, THYM | TBX5 | 1 hit | 10 hits | ATG16L1 | intronic | |||||
| 2 | 233267963 | 1 | 1 | rs3792112 | C | T | 0.25 | 0.37 | 0.33 | 0.53 | BLD | 6 tissues | 9 tissues | 6 bound proteins | Irf | 10 hits | ATG16L1 | intronic | |||
| 2 | 233271044 | 1 | 1 | rs3792111 | C | T | 0.17 | 0.36 | 0.33 | 0.53 | BLD | BLD, LIV, GI | GI | 4 bound proteins | 10 hits | ATG16L1 | intronic | ||||
| 2 | 233271764 | 1 | 1 | rs3828309 | A | G | 0.20 | 0.36 | 0.33 | 0.53 | BLD, LIV, PANC | GI,GI | AP-4,Ets | 1 hit | 4 hits | 10 hits | ATG16L1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 50718253 | 1 | 1 | rs62029864 | G | A | 0.05 | 0.15 | 0.00 | 0.22 | FAT, SKIN | 6 tissues | 6 tissues | GATA2 | GR,Irf,Nkx2 | 1 hit | NOD2 | intronic | |||
| 16 | 50722970 | 1 | 1 | rs2076756 | A | G | 0.05 | 0.15 | 0.00 | 0.22 | BLD | Mef2,Nanog | 6 hits | 1 hit | 3 hits | NOD2 | intronic | ||||
| 16 | 50724938 | 1 | 1 | rs749910 | G | A | 0.05 | 0.15 | 0.00 | 0.22 | BLD | LNG | HEY1,TATA | 1 hit | NOD2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 67234232 | 1 | 1 | rs79755370 | C | A | 0.01 | 0.06 | 0.00 | 0.06 | 29 tissues | 4 bound proteins | IL23R | intronic | |||||||
| 1 | 67240275 | 1 | 1 | rs11209026 | G | A | 0.01 | 0.06 | 0.00 | 0.06 | GR | 15 hits | 3 hits | IL23R | missense | ||||||
| 1 | 67242007 | 1 | 1 | rs11581607 | G | A | 0.01 | 0.06 | 0.00 | 0.06 | 4 altered motifs | IL23R | intronic | ||||||||
| 1 | 67247663 | 1 | 1 | rs113935720 | T | C | 0.01 | 0.06 | 0.00 | 0.06 | 4 altered motifs | IL23R | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 67236843 | 1 | 1 | rs11465804 | T | G | 0.03 | 0.06 | 0.00 | 0.06 | 6 altered motifs | 4 hits | 2 hits | 1 hit | IL23R | intronic | |||||
| 1 | 67242472 | 1 | 1 | rs80174646 | G | T | 0.03 | 0.07 | 0.00 | 0.06 | Evi-1,GATA,Pou3f1 | IL23R | intronic | ||||||||
| 1 | 67243701 | 1 | 1 | rs11488194 | A | G | 0.27 | 0.09 | 0.00 | 0.06 | CEBPB,Foxm1,Hoxa7 | IL23R | intronic | ||||||||
| 1 | 67244548 | 1 | 1 | rs148170789 | A | G | 0.16 | 0.08 | 0.00 | 0.06 | 4 altered motifs | IL23R | intronic | ||||||||
| 1 | 67244742 | 1 | 1 | rs140953244 | G | A | 0.27 | 0.09 | 0.00 | 0.06 | GATA,Lmo2-complex,SREBP | IL23R | intronic | ||||||||
| 1 | 67246303 | 1 | 1 | rs7551201 | C | T | 0.27 | 0.09 | 0.00 | 0.06 | AP-1,Pax-5 | IL23R | intronic | ||||||||
| 1 | 67246474 | 1 | 1 | rs6701313 | C | T | 0.03 | 0.07 | 0.00 | 0.06 | IL23R | intronic | |||||||||
| 1 | 67251268 | 1 | 1 | rs112106127 | C | T | 0.16 | 0.08 | 0.00 | 0.06 | IL23R | intronic | |||||||||
| 1 | 67257236 | 1 | 1 | rs41494046 | C | G | 0.28 | 0.09 | 0.00 | 0.06 | 12 tissues | SKIN | IL23R | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 233248491 | 1 | 1 | rs11680089 | G | C | 0.28 | 0.39 | 0.33 | 0.53 | BRST, BLD, SKIN | 7 altered motifs | 8 hits | ATG16L1 | |||||||
| 2 | 233248612 | 1 | 1 | rs11680130 | G | A | 0.25 | 0.38 | 0.33 | 0.53 | BLD, SKIN | 8 hits | ATG16L1 | ||||||||
| 2 | 233249042 | 1 | 1 | rs56049444 | C | T | 0.17 | 0.37 | 0.33 | 0.53 | BLD | BLD, THYM | 5 tissues | 8 hits | ATG16L1 | ||||||
| 2 | 233249087 | 1 | 1 | rs55835501 | C | T | 0.25 | 0.39 | 0.33 | 0.53 | BLD | BLD, THYM | 7 tissues | AIRE | 7 hits | ATG16L1 | |||||
| 2 | 233249095 | 1 | 1 | rs56227616 | T | C | 0.20 | 0.38 | 0.33 | 0.53 | BLD | BLD, THYM | 8 tissues | RFX5 | 7 hits | ATG16L1 | |||||
| 2 | 233250193 | 1 | 1 | rs10210302 | C | T | 0.25 | 0.38 | 0.33 | 0.53 | VAS | Hlx1 | 1 hit | 2 hits | 9 hits | ATG16L1 | |||||
| 2 | 233251699 | 1 | 1 | rs2289477 | T | G | 0.26 | 0.39 | 0.33 | 0.53 | 24 tissues | 53 tissues | 33 bound proteins | AP-2,Pbx3,Znf143 | 7 hits | ATG16L1 | 5'-UTR | ||||
| 2 | 233252802 | 1 | 1 | rs6752107 | G | A | 0.26 | 0.39 | 0.33 | 0.53 | 21 tissues | 7 tissues | 1 hit | 10 hits | ATG16L1 | intronic | |||||
| 2 | 233252937 | 1 | 1 | rs6738490 | T | C | 0.26 | 0.39 | 0.33 | 0.53 | 21 tissues | 7 tissues | BLD | GATA1 | 8 hits | ATG16L1 | intronic | ||||
| 2 | 233253123 | 1 | 1 | rs6431654 | C | T | 0.26 | 0.39 | 0.33 | 0.53 | 19 tissues | 12 tissues | BLD,LNG,BLD | GATA1 | Nanog | 1 hit | 10 hits | ATG16L1 | intronic | ||
| 2 | 233253507 | 1 | 1 | rs6745825 | A | G | 0.26 | 0.39 | 0.33 | 0.53 | BLD, LIV | 19 tissues | GI | 6 altered motifs | 8 hits | ATG16L1 | intronic | ||||
| 2 | 233255037 | 1 | 1 | rs6705964 | G | C | 0.25 | 0.39 | 0.33 | 0.53 | BLD | 6 tissues | 4 altered motifs | 9 hits | ATG16L1 | intronic | |||||
| 2 | 233258588 | 1 | 1 | rs6431660 | A | G | 0.17 | 0.36 | 0.33 | 0.53 | BLD | 8 altered motifs | 11 hits | ATG16L1 | intronic | ||||||
| 2 | 233258775 | 1 | 1 | rs6431661 | C | T | 0.21 | 0.36 | 0.33 | 0.53 | BLD, STRM | AIRE | 8 hits | ATG16L1 | intronic | ||||||
| 2 | 233259235 | 1 | 1 | rs34123137 | T | A | 0.20 | 0.36 | 0.33 | 0.53 | BLD, STRM, GI | 5 altered motifs | 8 hits | ATG16L1 | intronic | ||||||
| 2 | 233260144 | 1 | 1 | rs35300242 | G | A | 0.20 | 0.36 | 0.33 | 0.53 | 4 tissues | BLD | 15 altered motifs | 8 hits | ATG16L1 | intronic | |||||
| 2 | 233261176 | 1 | 1 | rs10164737 | C | T | 0.10 | 0.36 | 0.33 | 0.53 | 9 hits | ATG16L1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 32713151 | 1 | 1 | rs7765379 | T | G | 0.09 | 0.14 | 0.09 | 0.14 | BLD | AP-1 | 3 hits | 20 hits | 4.9kb 5' of XXbac-BPG254F23.7 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 132442760 | 1 | 1 | rs17622378 | A | G | 0.05 | 0.28 | 0.00 | 0.38 | 7 tissues | 4 altered motifs | 45 hits | C5orf56 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 40405948 | 1 | 1 | rs6890268 | A | T | 0.63 | 0.49 | 0.15 | 0.58 | BLD | 12 tissues | BLD | Evi-1 | 1 hit | 86kb 3' of AC108105.1 | |||||
| 5 | 40406028 | 1 | 1 | rs6871591 | T | A | 0.62 | 0.49 | 0.15 | 0.58 | BLD | 12 tissues | BLD,MUS | 4 altered motifs | 1 hit | 86kb 3' of AC108105.1 | |||||
| 5 | 40410482 | 1 | 1 | rs11742570 | T | C | 0.63 | 0.49 | 0.15 | 0.58 | 7 tissues | 17 tissues | 28 tissues | GATA2 | 3 hits | 926 hits | 1 hit | 90kb 3' of AC108105.1 | |||
| 5 | 40410833 | 1 | 1 | rs6451493 | G | T | 0.63 | 0.49 | 0.15 | 0.58 | 6 tissues | 16 tissues | 19 tissues | 4 bound proteins | CEBPB,HNF1,Pou2f2 | 1 hit | 1 hit | 90kb 3' of AC108105.1 | |||
| 5 | 40411189 | 1 | 1 | rs6451494 | T | C | 0.63 | 0.49 | 0.15 | 0.58 | 5 tissues | 17 tissues | 19 tissues | 4 bound proteins | Mef2,Sox | 1 hit | 91kb 3' of AC108105.1 | ||||
| 5 | 40411808 | 1 | 1 | rs6883964 | A | G | 0.63 | 0.49 | 0.15 | 0.58 | BLD, SKIN | 7 tissues | SKIN,BRST | 12 altered motifs | 1 hit | 91kb 3' of AC108105.1 | |||||
| 5 | 40412093 | 1 | 1 | rs12655810 | T | C | 0.63 | 0.49 | 0.15 | 0.58 | BLD | 5 tissues | 8 altered motifs | 1 hit | 92kb 3' of AC108105.1 | ||||||
| 5 | 40412364 | 1 | 1 | rs6888952 | A | G | 0.63 | 0.49 | 0.15 | 0.58 | BLD | 4 tissues | 7 altered motifs | 1 hit | 92kb 3' of AC108105.1 | ||||||
| 5 | 40412842 | 1 | 1 | rs10473191 | T | A | 0.63 | 0.49 | 0.15 | 0.58 | MUS | 13 altered motifs | 1 hit | 92kb 3' of AC108105.1 | |||||||
| 5 | 40414317 | 1 | 1 | rs1445004 | C | T | 0.63 | 0.49 | 0.15 | 0.58 | SKIN | BHLHE40,Gm397 | 1 hit | 94kb 3' of AC108105.1 | |||||||
| 5 | 40414965 | 1 | 1 | rs1992660 | C | T | 0.63 | 0.49 | 0.15 | 0.58 | SKIN | 6 altered motifs | 1 hit | 1 hit | 95kb 3' of AC108105.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 50675812 | 1 | 1 | rs6596 | G | A | 0.03 | 0.12 | 0.00 | 0.16 | 4 tissues | LNG,PLCNT,BLD | CMYC | 4 altered motifs | 1 hit | 3 hits | SNX20 | synonymous |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 62685804 | 1 | 1 | rs10761659 | A | G | 0.10 | 0.56 | 0.77 | 0.52 | DMRT5 | 4 hits | 419 hits | 1 hit | 14kb 3' of ZNF365 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 99524480 | 1 | 1 | rs4409764 | T | G | 0.40 | 0.57 | 0.53 | 0.52 | GI | 6 tissues | 6 tissues | Mrg,Sox,Tgif1 | 2 hits | 136 hits | 8 hits | 1.9kb 3' of RP11-129J12.2 | |||
| 10 | 99524588 | 1 | 1 | rs4129134 | C | G | 0.44 | 0.57 | 0.53 | 0.52 | GI | 6 tissues | 4 tissues | 8 altered motifs | 8 hits | 1.8kb 3' of RP11-129J12.2 | |||||
| 10 | 99524813 | 1 | 1 | rs4129133 | T | C | 0.40 | 0.57 | 0.53 | 0.52 | 6 tissues | ESC | 8 hits | 1.5kb 3' of RP11-129J12.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 9 | 114783386 | 1 | 1 | rs6478106 | C | T | 0.44 | 0.41 | 0.36 | 0.29 | BLD | 4 altered motifs | 1 hit | 1 hit | 2 hits | 5.9kb 3' of TNFSF15 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 11 | 76588150 | 1 | 1 | rs2155219 | G | T | 0.54 | 0.48 | 0.52 | 0.48 | 6 tissues | 4 tissues | 5 altered motifs | 7 hits | 350 hits | 35kb 3' of C11orf30 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 50675812 | 1 | 1 | rs6596 | G | A | 0.03 | 0.12 | 0.00 | 0.16 | 4 tissues | LNG,PLCNT,BLD | CMYC | 4 altered motifs | 1 hit | 3 hits | SNX20 | synonymous |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 150898347 | 1 | 1 | rs11741861 | A | G | 0.06 | 0.12 | 0.41 | 0.09 | NF-I | 1 hit | 142 hits | 44 hits | IRGM | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 9 | 136371953 | 1 | 1 | rs10781499 | G | A | 0.29 | 0.47 | 0.30 | 0.41 | GR | 2 hits | 186 hits | 31 hits | CARD9 | synonymous |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 159400761 | 1 | 1 | rs56167332 | C | A | 0.20 | 0.30 | 0.35 | 0.35 | 4 altered motifs | 1 hit | 38kb 3' of AC008697.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 233275771 | 1 | 1 | rs3792109 | G | A | 0.20 | 0.36 | 0.33 | 0.54 | 5 altered motifs | 2 hits | 1 hit | 9 hits | SCARNA5 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 50718253 | 1 | 1 | rs62029864 | G | A | 0.05 | 0.15 | 0.00 | 0.22 | FAT, SKIN | 6 tissues | 6 tissues | GATA2 | GR,Irf,Nkx2 | 1 hit | NOD2 | intronic | |||
| 16 | 50722970 | 1 | 1 | rs2076756 | A | G | 0.05 | 0.15 | 0.00 | 0.22 | BLD | Mef2,Nanog | 6 hits | 1 hit | 3 hits | NOD2 | intronic | ||||
| 16 | 50724938 | 1 | 1 | rs749910 | G | A | 0.05 | 0.15 | 0.00 | 0.22 | BLD | LNG | HEY1,TATA | 1 hit | NOD2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 9 | 136372044 | 1 | 1 | rs4077515 | C | T | 0.29 | 0.47 | 0.31 | 0.41 | 11 tissues | IPSC,IPSC,BRST | 5 hits | 23 hits | 29 hits | CARD9 | missense |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 99523570 | 1 | 1 | rs71485777 | TCCC | TGCA | 10 tissues | 16 tissues | 11 tissues | COMP1,Maf | 2.8kb 3' of RP11-129J12.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 132435113 | 1 | 1 | rs2188962 | C | T | 0.05 | 0.29 | 0.00 | 0.38 | LIV | 16 tissues | 6 tissues | HNF4A,HNF4G | 6 altered motifs | 3 hits | 324 hits | 45 hits | C5orf56 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 40405948 | 1 | 1 | rs6890268 | A | T | 0.63 | 0.49 | 0.15 | 0.58 | BLD | 12 tissues | BLD | Evi-1 | 1 hit | 86kb 3' of AC108105.1 | |||||
| 5 | 40406028 | 1 | 1 | rs6871591 | T | A | 0.62 | 0.49 | 0.15 | 0.58 | BLD | 12 tissues | BLD,MUS | 4 altered motifs | 1 hit | 86kb 3' of AC108105.1 | |||||
| 5 | 40410482 | 1 | 1 | rs11742570 | T | C | 0.63 | 0.49 | 0.15 | 0.58 | 7 tissues | 17 tissues | 28 tissues | GATA2 | 3 hits | 926 hits | 1 hit | 90kb 3' of AC108105.1 | |||
| 5 | 40410833 | 1 | 1 | rs6451493 | G | T | 0.63 | 0.49 | 0.15 | 0.58 | 6 tissues | 16 tissues | 19 tissues | 4 bound proteins | CEBPB,HNF1,Pou2f2 | 1 hit | 1 hit | 90kb 3' of AC108105.1 | |||
| 5 | 40411189 | 1 | 1 | rs6451494 | T | C | 0.63 | 0.49 | 0.15 | 0.58 | 5 tissues | 17 tissues | 19 tissues | 4 bound proteins | Mef2,Sox | 1 hit | 91kb 3' of AC108105.1 | ||||
| 5 | 40411808 | 1 | 1 | rs6883964 | A | G | 0.63 | 0.49 | 0.15 | 0.58 | BLD, SKIN | 7 tissues | SKIN,BRST | 12 altered motifs | 1 hit | 91kb 3' of AC108105.1 | |||||
| 5 | 40412093 | 1 | 1 | rs12655810 | T | C | 0.63 | 0.49 | 0.15 | 0.58 | BLD | 5 tissues | 8 altered motifs | 1 hit | 92kb 3' of AC108105.1 | ||||||
| 5 | 40412364 | 1 | 1 | rs6888952 | A | G | 0.63 | 0.49 | 0.15 | 0.58 | BLD | 4 tissues | 7 altered motifs | 1 hit | 92kb 3' of AC108105.1 | ||||||
| 5 | 40412842 | 1 | 1 | rs10473191 | T | A | 0.63 | 0.49 | 0.15 | 0.58 | MUS | 13 altered motifs | 1 hit | 92kb 3' of AC108105.1 | |||||||
| 5 | 40414317 | 1 | 1 | rs1445004 | C | T | 0.63 | 0.49 | 0.15 | 0.58 | SKIN | BHLHE40,Gm397 | 1 hit | 94kb 3' of AC108105.1 | |||||||
| 5 | 40414965 | 1 | 1 | rs1992660 | C | T | 0.63 | 0.49 | 0.15 | 0.58 | SKIN | 6 altered motifs | 1 hit | 1 hit | 95kb 3' of AC108105.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 9 | 4967950 | 1 | 1 | rs7850675 | A | C | 0.23 | 0.04 | 0.06 | 0.00 | 5 tissues | Eomes,TBX5 | 146bp 5' of AL158147.1 | ||||||||
| 9 | 4968019 | 1 | 1 | rs10974895 | T | C | 0.10 | 0.04 | 0.06 | 0.00 | IPSC,HRT | 5 altered motifs | 77bp 5' of AL158147.1 | ||||||||
| 9 | 4968331 | 1 | 1 | rs10974896 | T | C | 0.11 | 0.04 | 0.06 | 0.00 | 19 altered motifs | 145bp 3' of AL158147.1 | |||||||||
| 9 | 4968735 | 1 | 1 | rs16922486 | T | C | 0.10 | 0.02 | 0.06 | 0.00 | MUS | DMRT1,DMRT4 | 549bp 3' of AL158147.1 | ||||||||
| 9 | 4974153 | 1 | 1 | rs61473187 | G | A | 0.12 | 0.03 | 0.01 | 0.00 | 4 tissues | 5 tissues | CEBPB | Foxj2,Mef2 | 6kb 3' of AL158147.1 | ||||||
| 9 | 4975326 | 1 | 1 | rs144050958 | G | A | 0.12 | 0.03 | 0.01 | 0.00 | Sp4 | 7.1kb 3' of AL158147.1 | |||||||||
| 9 | 4980809 | 1 | 1 | rs189151190 | C | T | 0.00 | 0.00 | 0.00 | 0.00 | BLD | SKIN | AP-1 | 4.2kb 5' of JAK2 | |||||||
| 9 | 4981600 | 1 | 1 | rs75900472 | AC | A | 0.12 | 0.02 | 0.01 | 0.00 | BLD | MUS | Ik-2,LUN-1,NF-AT | 3.4kb 5' of JAK2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 22 | 39263768 | 1 | 1 | rs2413583 | C | T | 0.32 | 0.14 | 0.04 | 0.16 | BLD, LIV | Dobox4,SREBP,Zfp410 | 2 hits | 70 hits | 1 hit | 2.7kb 5' of AL031590.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 3 | 49684099 | 1 | 1 | rs3197999 | G | A | 0.24 | 0.22 | 0.06 | 0.31 | 5 tissues | OVRY | SMC3,TCF12,ZBRK1 | 6 hits | 467 hits | 59 hits | MST1 | missense |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 233263542 | 1 | 1 | rs12162308 | C | G | 0.25 | 0.37 | 0.33 | 0.53 | PLCNT | Whn | 11 hits | ATG16L1 | intronic | ||||||
| 2 | 233264200 | 1 | 1 | rs6708373 | A | G | 0.25 | 0.38 | 0.33 | 0.53 | LIV | 11 hits | ATG16L1 | intronic | |||||||
| 2 | 233264269 | 1 | 1 | rs10165561 | G | C | 0.25 | 0.38 | 0.33 | 0.53 | Ets,LUN-1 | 11 hits | ATG16L1 | intronic | |||||||
| 2 | 233264857 | 1 | 1 | rs12994997 | G | A | 0.25 | 0.37 | 0.33 | 0.53 | ESDR, LIV | 1 hit | 1655 hits | 11 hits | ATG16L1 | intronic | |||||
| 2 | 233267060 | 1 | 1 | rs13009506 | G | T | 0.20 | 0.36 | 0.33 | 0.53 | BLD, THYM | TBX5 | 1 hit | 10 hits | ATG16L1 | intronic | |||||
| 2 | 233267963 | 1 | 1 | rs3792112 | C | T | 0.25 | 0.37 | 0.33 | 0.53 | BLD | 6 tissues | 9 tissues | 6 bound proteins | Irf | 10 hits | ATG16L1 | intronic | |||
| 2 | 233271044 | 1 | 1 | rs3792111 | C | T | 0.17 | 0.36 | 0.33 | 0.53 | BLD | BLD, LIV, GI | GI | 4 bound proteins | 10 hits | ATG16L1 | intronic | ||||
| 2 | 233271764 | 1 | 1 | rs3828309 | A | G | 0.20 | 0.36 | 0.33 | 0.53 | BLD, LIV, PANC | GI,GI | AP-4,Ets | 1 hit | 4 hits | 10 hits | ATG16L1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 1 | rs116392568 | 16 hits |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 131277907 | 1 | 1 | rs11743851 | T | C | 0.02 | 0.27 | 0.00 | 0.32 | BLD | 7 tissues | BLD | SIX5,Znf143 | 5 hits | CDC42SE2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 79300560 | 1 | 1 | rs1250550 | C | A | 0.09 | 0.27 | 0.48 | 0.30 | 10 tissues | MUS,BRN | 3 hits | 2 hits | ZMIZ1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 9 | 136371953 | 1 | 1 | rs10781499 | G | A | 0.29 | 0.47 | 0.30 | 0.41 | GR | 2 hits | 186 hits | 31 hits | CARD9 | synonymous |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 62685804 | 1 | 1 | rs10761659 | A | G | 0.10 | 0.56 | 0.77 | 0.52 | DMRT5 | 4 hits | 419 hits | 1 hit | 14kb 3' of ZNF365 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 31306603 | 1 | 1 | rs9264942 | T | C | 0.30 | 0.34 | 0.38 | 0.36 | 5 altered motifs | 4 hits | 469 hits | 67 hits | 5kb 5' of XXbac-BPG248L24.13 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 11 | 76588605 | 1 | 1 | rs11236797 | C | A | 0.19 | 0.41 | 0.42 | 0.44 | BLD | 14 tissues | 29 tissues | 4 bound proteins | GATA | 36kb 3' of C11orf30 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 159400761 | 1 | 1 | rs56167332 | C | A | 0.20 | 0.30 | 0.35 | 0.35 | 4 altered motifs | 1 hit | 38kb 3' of AC008697.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 200905101 | 1 | 1 | rs35730213 | G | C | 0.15 | 0.19 | 0.00 | 0.26 | 7 tissues | Dobox4 | 8 hits | C1orf106 | intronic | ||||||
| 1 | 200905967 | 1 | 1 | rs12132298 | T | C | 0.15 | 0.19 | 0.00 | 0.26 | 6 tissues | 18 tissues | 5 bound proteins | HNF1,TCF4 | 8 hits | C1orf106 | intronic | ||||
| 1 | 200906769 | 1 | 1 | rs59655222 | T | C | 0.15 | 0.19 | 0.00 | 0.26 | 5 tissues | ESDR,PLCNT | 8 hits | C1orf106 | intronic | ||||||
| 1 | 200908434 | 1 | 1 | rs7554511 | C | A | 0.15 | 0.19 | 0.00 | 0.26 | GI | 10 tissues | GI,GI | FOXA1 | GATA,Maf | 5 hits | 574 hits | 8 hits | C1orf106 | intronic | |
| 1 | 200908722 | 1 | 1 | rs41299637 | T | G | 0.15 | 0.19 | 0.00 | 0.26 | GI | 6 tissues | LNG,PLCNT | CMYC,GATA3,P300 | 8 hits | C1orf106 | intronic | ||||
| 1 | 200909599 | 1 | 1 | rs12131796 | G | A | 0.15 | 0.19 | 0.00 | 0.26 | STRM, GI, LNG | BLD | 4 altered motifs | 8 hits | C1orf106 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 40360356 | 1 | 1 | rs11743463 | C | A | 0.22 | 0.08 | 0.01 | 0.13 | BLD, SKIN | HP1-site-factor,NF-I,Pax-4 | 40kb 3' of AC108105.1 | ||||||||
| 5 | 40362872 | 1 | 1 | rs73082864 | A | G | 0.22 | 0.08 | 0.01 | 0.13 | Nkx3,Pax-8,TATA | 42kb 3' of AC108105.1 | |||||||||
| 5 | 40375054 | 1 | 1 | rs146646093 | A | AAAC | 0.22 | 0.08 | 0.01 | 0.13 | VAS | GR | 55kb 3' of AC108105.1 | ||||||||
| 5 | 40376057 | 1 | 1 | rs56244034 | A | T | 0.22 | 0.08 | 0.01 | 0.13 | BLD | Nkx6-1 | 56kb 3' of AC108105.1 | ||||||||
| 5 | 40377764 | 1 | 1 | rs17227583 | T | C | 0.22 | 0.08 | 0.01 | 0.13 | BLD, THYM | TAL1,TATA | 57kb 3' of AC108105.1 | ||||||||
| 5 | 40383959 | 1 | 1 | rs895123 | C | G | 0.22 | 0.08 | 0.01 | 0.13 | BLD | 15 tissues | 22 tissues | CJUN,P300,STAT3 | Mxi1,Myc | 64kb 3' of AC108105.1 | |||||
| 5 | 40389185 | 1 | 1 | rs1124233 | G | A | 0.24 | 0.08 | 0.01 | 0.13 | BLD, THYM, GI | 4 altered motifs | 69kb 3' of AC108105.1 | ||||||||
| 5 | 40392124 | 1 | 1 | rs2371685 | A | T | 0.22 | 0.08 | 0.01 | 0.13 | BLD, GI | Bbx,Bcl6b,Sox | 72kb 3' of AC108105.1 | ||||||||
| 5 | 40392626 | 1 | 1 | rs4613763 | T | C | 0.22 | 0.08 | 0.01 | 0.13 | BLD, GI | BAF155,SIX5,Znf143 | 2 hits | 1 hit | 72kb 3' of AC108105.1 | ||||||
| 5 | 40394099 | 1 | 1 | rs10512735 | G | T | 0.22 | 0.08 | 0.01 | 0.13 | Nrf1 | 74kb 3' of AC108105.1 | |||||||||
| 5 | 40396323 | 1 | 1 | rs11749040 | G | A | 0.23 | 0.08 | 0.01 | 0.13 | MUS, GI | Foxk1 | 76kb 3' of AC108105.1 | ||||||||
| 5 | 40399918 | 1 | 1 | rs11738106 | T | A | 0.22 | 0.08 | 0.01 | 0.13 | 6 tissues | 80kb 3' of AC108105.1 | |||||||||
| 5 | 40401407 | 1 | 1 | rs17234657 | T | G | 0.22 | 0.08 | 0.01 | 0.13 | 14 tissues | 15 tissues | Myc | 1 hit | 1 hit | 81kb 3' of AC108105.1 | |||||
| 5 | 40402131 | 1 | 1 | rs6879283 | T | C | 0.22 | 0.08 | 0.01 | 0.13 | 12 tissues | 20 tissues | 13 bound proteins | Nkx2 | 82kb 3' of AC108105.1 | ||||||
| 5 | 40403091 | 1 | 1 | rs1373694 | G | A | 0.22 | 0.08 | 0.01 | 0.13 | BLD | 5 altered motifs | 83kb 3' of AC108105.1 | ||||||||
| 5 | 40406883 | 1 | 1 | rs6896243 | C | T | 0.22 | 0.08 | 0.01 | 0.13 | BLD, LIV | 9 tissues | 11 tissues | Pax-4 | 86kb 3' of AC108105.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 35006503 | 1 | 1 | rs11010067 | C | G | 0.45 | 0.37 | 0.32 | 0.37 | 8 tissues | GATA,Irf | 1 hit | 2262 hits | 11 hits | 2kb 3' of CUL2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 22 | 39263768 | 1 | 1 | rs2413583 | C | T | 0.32 | 0.14 | 0.04 | 0.16 | BLD, LIV | Dobox4,SREBP,Zfp410 | 2 hits | 70 hits | 1 hit | 2.7kb 5' of AL031590.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 62781559 | 1 | 1 | rs224090 | T | C | 0.65 | 0.55 | 0.44 | 0.59 | Mef2 | 1 hit | 6 hits | 12kb 3' of RP11-436D10.3 | |||||||
| 10 | 62781644 | 1 | 1 | rs224092 | A | G | 0.65 | 0.55 | 0.44 | 0.59 | AIRE,Hand1,Pax-6 | 1 hit | 6 hits | 12kb 3' of RP11-436D10.3 | |||||||
| 10 | 62790311 | 1 | 1 | rs224109 | G | C | 0.65 | 0.55 | 0.44 | 0.59 | BRN | MUS | LNG | 6 altered motifs | 6 hits | 3.3kb 3' of RP11-436D10.3 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 21 | 15445619 | 1 | 1 | rs2823286 | G | A | 0.23 | 0.28 | 0.14 | 0.28 | BLD, LNG | 6 tissues | 13 tissues | BATF,PU1,USF1 | Mef2,p300 | 1 hit | 287 hits | 1 hit | 43kb 5' of AJ006998.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 50675812 | 1 | 1 | rs6596 | G | A | 0.03 | 0.12 | 0.00 | 0.16 | 4 tissues | LNG,PLCNT,BLD | CMYC | 4 altered motifs | 1 hit | 3 hits | SNX20 | synonymous |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 12 | 40063822 | 1 | 1 | rs12424040 | C | A | 0.01 | 0.17 | 0.02 | 0.02 | 6 tissues | MUS,OVRY | 13 altered motifs | SLC2A13 | intronic | ||||||
| 12 | 40065325 | 1 | 1 | rs12426378 | T | A | 0.01 | 0.17 | 0.02 | 0.02 | GATA,Pitx2 | SLC2A13 | intronic | ||||||||
| 12 | 40068527 | 1 | 1 | rs28365689 | T | C | 0.01 | 0.17 | 0.02 | 0.02 | CEBPA,Pou2f2,Rad21 | 1 hit | SLC2A13 | intronic | |||||||
| 12 | 40073324 | 1 | 1 | rs28365169 | A | C | 0.01 | 0.17 | 0.02 | 0.02 | CIZ,HDAC2,Sin3Ak-20 | 1 hit | SLC2A13 | intronic | |||||||
| 12 | 40077800 | 1 | 1 | rs202148073 | ATTTG | A | 0.01 | 0.17 | 0.02 | 0.02 | SKIN | 6 altered motifs | 1 hit | SLC2A13 | intronic | ||||||
| 12 | 40080581 | 1 | 1 | rs141025863 | G | C | 0.01 | 0.17 | 0.02 | 0.02 | ATF3,Spz1,ZBTB33 | SLC2A13 | intronic | ||||||||
| 12 | 40080840 | 1 | 1 | rs77205332 | G | C | 0.01 | 0.17 | 0.02 | 0.02 | Irf,TAL1 | SLC2A13 | intronic | ||||||||
| 12 | 40086225 | 1 | 1 | rs11564216 | G | T | 0.01 | 0.17 | 0.02 | 0.02 | IPSC | SLC2A13 | intronic | ||||||||
| 12 | 40087681 | 1 | 1 | rs28365173 | C | T | 0.01 | 0.17 | 0.02 | 0.02 | STRM | ESDR | Hltf,SRF | SLC2A13 | intronic | ||||||
| 12 | 40090579 | 1 | 1 | rs138638118 | TAATA | T | 0.01 | 0.17 | 0.02 | 0.02 | PANC | 15 altered motifs | SLC2A13 | intronic | |||||||
| 12 | 40096663 | 1 | 1 | rs10506144 | A | C | 0.01 | 0.17 | 0.02 | 0.02 | Myb | SLC2A13 | intronic | ||||||||
| 12 | 40096848 | 1 | 1 | rs117880631 | G | A | 0.01 | 0.17 | 0.02 | 0.02 | ESDR | Bcl6b | SLC2A13 | intronic | |||||||
| 12 | 40101500 | 1 | 1 | rs11175186 | C | G | 0.01 | 0.17 | 0.02 | 0.02 | 6 tissues | CRVX | SLC2A13 | intronic | |||||||
| 12 | 40106393 | 1 | 1 | rs78917199 | C | A | 0.01 | 0.17 | 0.02 | 0.02 | 23 tissues | 4 tissues | 31 tissues | ZNF263 | Nkx3 | 303bp 5' of SLC2A13 | |||||
| 12 | 40107320 | 1 | 1 | rs4768213 | G | A | 0.01 | 0.17 | 0.02 | 0.02 | 20 tissues | 9 tissues | 12 tissues | 4 altered motifs | 1.2kb 5' of SLC2A13 | ||||||
| 12 | 40111665 | 1 | 1 | rs729215 | T | A | 0.01 | 0.17 | 0.03 | 0.02 | Maf,Pou2f2 | 5.6kb 5' of SLC2A13 | |||||||||
| 12 | 40114019 | 1 | 1 | rs17458549 | A | G | 0.01 | 0.17 | 0.02 | 0.02 | 10 altered motifs | 7.9kb 5' of SLC2A13 | |||||||||
| 12 | 40114538 | 1 | 1 | rs201580148 | G | GA | 0.01 | 0.17 | 0.02 | 0.02 | SKIN | PANC | HP1-site-factor,Mef2 | 8.4kb 5' of SLC2A13 | |||||||
| 12 | 40119429 | 1 | 1 | rs117563959 | A | G | 0.01 | 0.17 | 0.02 | 0.02 | CEBPB,SIX5 | 13kb 5' of SLC2A13 | |||||||||
| 12 | 40129771 | 1 | 1 | rs35316273 | A | G | 0.01 | 0.17 | 0.02 | 0.02 | NF-I,Pou2f2 | 11kb 3' of RP11-476D10.1 | |||||||||
| 12 | 40134630 | 1 | 1 | rs12422544 | T | C | 0.01 | 0.17 | 0.02 | 0.02 | 7 altered motifs | 6.3kb 3' of RP11-476D10.1 | |||||||||
| 12 | 40137144 | 1 | 1 | rs142516728 | A | G | 0.01 | 0.17 | 0.02 | 0.02 | BLD, SKIN | Mef2 | 1 hit | 3.8kb 3' of RP11-476D10.1 | |||||||
| 12 | 40148713 | 1 | 1 | rs118148378 | C | G | 0.01 | 0.17 | 0.02 | 0.02 | GI,CRVX | 9 altered motifs | 1 hit | 5.8kb 5' of RP11-476D10.1 | |||||||
| 12 | 40148961 | 1 | 1 | rs78214347 | A | G | 0.01 | 0.17 | 0.02 | 0.02 | 5 altered motifs | 1 hit | 6.1kb 5' of RP11-476D10.1 | ||||||||
| 12 | 40149743 | 1 | 1 | rs17458808 | T | A | 0.01 | 0.17 | 0.02 | 0.02 | SKIN, FAT | Hic1 | 6.5kb 5' of AC079630.2 | ||||||||
| 12 | 40193719 | 1 | 1 | rs17484003 | T | C | 0.01 | 0.16 | 0.02 | 0.02 | BLD | Ascl2,LBP-1 | AC079630.4 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 206766559 | 1 | 1 | rs3024505 | G | A | 0.04 | 0.10 | 0.02 | 0.17 | BLD, BONE | 15 tissues | 34 tissues | 22 bound proteins | MZF1::1-4,Pax-4 | 7 hits | 257 hits | 1kb 3' of IL10 | |||
| 1 | 206769068 | 1 | 1 | rs3024495 | C | T | 0.02 | 0.10 | 0.02 | 0.17 | BLD, GI | 11 tissues | BLD,SKIN | IL10 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 9 | 114806486 | 1 | 1 | rs6478109 | A | G | 0.89 | 0.74 | 0.53 | 0.69 | 8 tissues | 22 tissues | 23 tissues | EBF1,NFKB,TCF12 | Hoxa7 | 1 hit | 1 hit | 2 hits | 359bp 5' of TNFSF15 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 13 | 43910570 | 1 | 1 | rs6561151 | G | A | 0.36 | 0.35 | 0.30 | 0.24 | 4 tissues | SKIN | 7 altered motifs | 16 hits | 17kb 3' of LACC1 | ||||||
| 13 | 43910940 | 1 | 1 | rs9316058 | G | C | 0.36 | 0.35 | 0.30 | 0.24 | 4 tissues | Evi-1,Osf2,PEBP | 16 hits | 17kb 3' of LACC1 | |||||||
| 13 | 43912653 | 1 | 1 | rs9316059 | A | T | 0.35 | 0.33 | 0.30 | 0.24 | ESDR, HRT, PANC | Gfi1,Zfp691 | 16 hits | 19kb 3' of LACC1 | |||||||
| 13 | 43916045 | 1 | 1 | rs61960013 | C | G | 0.35 | 0.35 | 0.30 | 0.24 | STRM | HEN1,YY1 | 18 hits | 22kb 3' of LACC1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 31306603 | 1 | 1 | rs9264942 | T | C | 0.30 | 0.34 | 0.38 | 0.36 | 5 altered motifs | 4 hits | 469 hits | 67 hits | 5kb 5' of XXbac-BPG248L24.13 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 18 | 12808141 | 1 | 1 | rs8096138 | C | G | 0.04 | 0.07 | 0.16 | 0.16 | GR,Osr,TATA | 10 hits | PTPN2 | intronic | |||||||
| 18 | 12808467 | 1 | 1 | rs35153695 | AC | A | 0.04 | 0.07 | 0.16 | 0.16 | 17 altered motifs | 10 hits | PTPN2 | intronic | |||||||
| 18 | 12809341 | 1 | 1 | rs1893217 | A | G | 0.05 | 0.07 | 0.16 | 0.16 | ESC | RXR::LXR,RXRA | 5 hits | 1095 hits | 10 hits | PTPN2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 19 | 1123653 | 1 | 1 | rs4807570 | G | A | 0.31 | 0.33 | 0.13 | 0.20 | ESDR | 10 tissues | 4 tissues | 6 altered motifs | 3 hits | SBNO2 | intronic | ||||
| 19 | 1124032 | 1 | 1 | rs2024092 | G | A | 0.32 | 0.33 | 0.13 | 0.20 | 10 tissues | 5 tissues | 5 altered motifs | 1 hit | 452 hits | 4 hits | SBNO2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 17 | 34266646 | 1 | 1 | rs3091315 | A | G | 0.41 | 0.47 | 0.62 | 0.32 | FAT, BLD | 5 altered motifs | 1 hit | 363 hits | 3.6kb 5' of CCL7 | ||||||
| 17 | 34266955 | 1 | 1 | rs3091316 | G | A | 0.26 | 0.46 | 0.62 | 0.32 | BLD | Gmeb1,Mef2,Pou2f2 | 2 hits | 3.3kb 5' of CCL7 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 21 | 15445619 | 1 | 1 | rs2823286 | G | A | 0.23 | 0.28 | 0.14 | 0.28 | BLD, LNG | 6 tissues | 13 tissues | BATF,PU1,USF1 | Mef2,p300 | 1 hit | 287 hits | 1 hit | 43kb 5' of AJ006998.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 17 | 39756124 | 1 | 1 | rs12946510 | C | T | 0.17 | 0.36 | 0.35 | 0.47 | 4 tissues | 11 tissues | 13 tissues | 13 bound proteins | 7 altered motifs | 1 hit | 238 hits | 33 hits | 1.6kb 3' of RP11-94L15.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 99524480 | 1 | 1 | rs4409764 | T | G | 0.40 | 0.57 | 0.53 | 0.52 | GI | 6 tissues | 6 tissues | Mrg,Sox,Tgif1 | 2 hits | 136 hits | 8 hits | 1.9kb 3' of RP11-129J12.2 | |||
| 10 | 99524588 | 1 | 1 | rs4129134 | C | G | 0.44 | 0.57 | 0.53 | 0.52 | GI | 6 tissues | 4 tissues | 8 altered motifs | 8 hits | 1.8kb 3' of RP11-129J12.2 | |||||
| 10 | 99524813 | 1 | 1 | rs4129133 | T | C | 0.40 | 0.57 | 0.53 | 0.52 | 6 tissues | ESC | 8 hits | 1.5kb 3' of RP11-129J12.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 50729867 | 1 | 1 | rs2066847 | G | GC | 0.01 | 0.01 | 0.00 | 0.01 | 4 altered motifs | 3 hits | NOD2 | frameshift |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 3 | 49684099 | 1 | 1 | rs3197999 | G | A | 0.24 | 0.22 | 0.06 | 0.31 | 5 tissues | OVRY | SMC3,TCF12,ZBRK1 | 6 hits | 467 hits | 59 hits | MST1 | missense |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 60977506 | 1 | 1 | rs7608697 | A | C | 0.68 | 0.32 | 0.05 | 0.37 | BLD | BLD, SKIN | SKIN | BCL11A,IRF4 | 5 altered motifs | 17 hits | PUS10 | intronic | |||
| 2 | 60977553 | 1 | 1 | rs7596362 | T | C | 0.91 | 0.33 | 0.05 | 0.37 | BLD | BLD, SKIN | SKIN | IRF4 | 4 altered motifs | 17 hits | PUS10 | intronic | |||
| 2 | 60977721 | 1 | 1 | rs7608910 | A | G | 0.43 | 0.30 | 0.05 | 0.37 | BLD | LNG, BLD | SKIN | 2 hits | 405 hits | 15 hits | PUS10 | intronic | |||
| 2 | 60977782 | 1 | 1 | rs4560096 | T | G | 0.43 | 0.30 | 0.05 | 0.37 | BLD | LNG, BLD | AP-4,Sin3Ak-20 | 13 hits | PUS10 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 105987150 | 1 | 1 | rs6568421 | A | G | 0.17 | 0.19 | 0.00 | 0.29 | 6 tissues | 5 tissues | Nkx2 | 2 hits | 82kb 3' of 7SK | ||||||
| 6 | 105987394 | 1 | 1 | rs7746082 | G | C | 0.01 | 0.18 | 0.00 | 0.29 | 5 tissues | MUS,MUS,SKIN | Cphx,HNF4 | 1 hit | 272 hits | 83kb 3' of 7SK |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 21 | 44195858 | 1 | 1 | rs7282490 | G | A | 0.79 | 0.43 | 0.42 | 0.60 | BLD | 7 tissues | BLD | 1 hit | 221 hits | 4 hits | 5.4kb 5' of AP001057.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 9 | 114790969 | 1 | 1 | rs4246905 | T | C | 0.95 | 0.78 | 0.65 | 0.72 | ESDR, BRST, MUS | ESDR,MUS | 2 hits | 491 hits | 1 hit | TNFSF15 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 31301916 | 1 | 1 | rs114985235 | T | C | 0.05 | 0.07 | 0.16 | 0.04 | LBP-9 | 273bp 5' of XXbac-BPG248L24.13 | |||||||||
| 6 | 31301917 | 1 | 1 | rs116589426 | T | A | 0.05 | 0.07 | 0.16 | 0.04 | Msx-1 | 274bp 5' of XXbac-BPG248L24.13 | |||||||||
| 6 | 31301920 | 1 | 1 | rs114151681 | G | A | 0.05 | 0.08 | 0.16 | 0.04 | AP-3,PU.1 | 277bp 5' of XXbac-BPG248L24.13 | |||||||||
| 6 | 31301924 | 1 | 1 | rs9380241 | C | T | 0.05 | 0.08 | 0.16 | 0.04 | PU.1 | 281bp 5' of XXbac-BPG248L24.13 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 28506388 | 1 | 1 | rs26528 | T | C | 0.35 | 0.50 | 0.36 | 0.41 | BLD | 7 tissues | PLCNT,BLD | PPAR,RXRA,Zfp691 | 1 hit | 383 hits | 141 hits | IL27 | intronic | ||
| 16 | 28507775 | 1 | 1 | rs153109 | T | C | 0.35 | 0.50 | 0.36 | 0.41 | BLD | 7 tissues | BLD,MUS,BLD | VDR | 141 hits | IL27 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 32607736 | 1 | 1 | rs9271060 | C | G | 0.77 | 0.77 | 0.78 | 0.73 | BLD | ESC, BLD, FAT | BLD,BLD | 6 bound proteins | Evi-1 | 257 hits | 18kb 5' of HLA-DRB1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 172875212 | 1 | 1 | rs6425143 | T | G | 0.38 | 0.52 | 0.88 | 0.24 | 6 tissues | 7 tissues | NFKB | 1 hit | 1 hit | RP1-15D23.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 62685804 | 1 | 1 | rs10761659 | A | G | 0.10 | 0.56 | 0.77 | 0.52 | DMRT5 | 4 hits | 419 hits | 1 hit | 14kb 3' of ZNF365 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 50886648 | 1 | 1 | rs8053407 | G | A | 0.19 | 0.11 | 0.08 | 0.14 | 11 altered motifs | RP11-883G14.1 | |||||||||
| 16 | 50887672 | 1 | 1 | rs59140851 | C | A | 0.17 | 0.11 | 0.08 | 0.14 | BLD | IPSC,BLD | BHLHE40 | RP11-883G14.1 | |||||||
| 16 | 50887903 | 1 | 1 | rs16949029 | G | C | 0.17 | 0.11 | 0.08 | 0.14 | Nkx2 | RP11-883G14.1 | |||||||||
| 16 | 50888209 | 1 | 1 | rs1874494 | A | G | 0.17 | 0.11 | 0.06 | 0.14 | NRSF | NRSF,RXRA | 1 hit | RP11-883G14.1 | |||||||
| 16 | 50888875 | 1 | 1 | rs13333062 | G | A | 0.18 | 0.11 | 0.06 | 0.14 | TBX5 | 1 hit | RP11-883G14.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 27518370 | 1 | 1 | rs780094 | T | C | 0.87 | 0.60 | 0.44 | 0.59 | LIV, BLD | LIV | FOXA2,MAFK,RXRA | 9 altered motifs | 21 hits | 100 hits | 29 hits | GCKR | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 172885194 | 1 | 1 | rs4916283 | G | A | 0.23 | 0.49 | 0.92 | 0.24 | 8 tissues | 34 altered motifs | 1 hit | RP1-15D23.2 | |||||||
| 1 | 172886436 | 1 | 1 | rs68143871 | A | G | 0.30 | 0.49 | 0.92 | 0.24 | 11 tissues | 6 altered motifs | 1 hit | RP1-15D23.2 | |||||||
| 1 | 172889567 | 1 | 1 | rs10912490 | C | T | 0.29 | 0.49 | 0.92 | 0.24 | 5 altered motifs | 1 hit | RP1-15D23.2 | ||||||||
| 1 | 172890895 | 1 | 1 | rs12739009 | A | C | 0.31 | 0.50 | 0.92 | 0.24 | FAC1 | 1 hit | RP1-15D23.2 | ||||||||
| 1 | 172892434 | 1 | 1 | rs2213742 | C | T | 0.30 | 0.49 | 0.92 | 0.24 | 1 hit | RP1-15D23.2 | |||||||||
| 1 | 172892619 | 1 | 1 | rs2213745 | A | G | 0.30 | 0.49 | 0.92 | 0.24 | VAS | 5 altered motifs | 1 hit | RP1-15D23.2 | |||||||
| 1 | 172893094 | 1 | 1 | rs9286879 | A | G | 0.32 | 0.50 | 0.92 | 0.24 | CRVX | 10 tissues | 2 hits | 2 hits | 1 hit | RP1-15D23.2 | |||||
| 1 | 172893240 | 1 | 1 | rs7527462 | C | G | 0.29 | 0.49 | 0.92 | 0.24 | CRVX | 10 tissues | PLCNT,PANC | AIRE | 1 hit | RP1-15D23.2 | |||||
| 1 | 172893799 | 1 | 1 | rs10489276 | C | T | 0.30 | 0.49 | 0.92 | 0.24 | CRVX,VAS | 1 hit | 1 hit | RP1-15D23.2 | |||||||
| 1 | 172894808 | 1 | 1 | rs2157453 | G | A | 0.30 | 0.49 | 0.92 | 0.24 | BLD, SKIN | 12 tissues | BLD,CRVX | GATA1 | 1 hit | 1 hit | 1 hit | RP1-15D23.2 | |||
| 1 | 172894852 | 1 | 1 | rs2157454 | G | A | 0.30 | 0.49 | 0.92 | 0.24 | BLD, SKIN | 12 tissues | CRVX | GATA1 | 5 altered motifs | 1 hit | RP1-15D23.2 | ||||
| 1 | 172895043 | 1 | 1 | rs2187892 | G | A | 0.30 | 0.49 | 0.92 | 0.24 | 5 tissues | 11 tissues | BLD,CRVX | E2F,LBP-1,RXRA | 1 hit | RP1-15D23.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 19 | 1123653 | 1 | 1 | rs4807570 | G | A | 0.31 | 0.33 | 0.13 | 0.20 | ESDR | 10 tissues | 4 tissues | 6 altered motifs | 3 hits | SBNO2 | intronic | ||||
| 19 | 1124032 | 1 | 1 | rs2024092 | G | A | 0.32 | 0.33 | 0.13 | 0.20 | 10 tissues | 5 tissues | 5 altered motifs | 1 hit | 452 hits | 4 hits | SBNO2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 24873823 | 1 | 1 | rs11892869 | A | T | 0.85 | 0.39 | 0.45 | 0.41 | CRVX | 13 tissues | 6 tissues | 5 bound proteins | TCF12,Znf143 | 35 hits | ADCY3 | intronic | |||
| 2 | 24874203 | 1 | 1 | rs7580081 | G | C | 0.87 | 0.39 | 0.45 | 0.41 | CRVX | 14 tissues | 9 tissues | 5 bound proteins | 8 altered motifs | 35 hits | ADCY3 | intronic | |||
| 2 | 24874775 | 1 | 1 | rs13407913 | A | G | 0.85 | 0.39 | 0.45 | 0.41 | 11 tissues | 6 altered motifs | 287 hits | 36 hits | ADCY3 | intronic | |||||
| 2 | 24875070 | 1 | 1 | rs13410999 | T | C | 0.84 | 0.39 | 0.45 | 0.41 | 10 tissues | GR,HDAC2,Pax-8 | 1 hit | 35 hits | ADCY3 | intronic | |||||
| 2 | 24875164 | 1 | 1 | rs139058744 | G | GCTCA | 0.85 | 0.39 | 0.45 | 0.41 | 9 tissues | Hsf | 20 hits | ADCY3 | intronic | ||||||
| 2 | 24876488 | 1 | 1 | rs6545776 | A | C | 0.82 | 0.38 | 0.45 | 0.41 | PLCNT | 7 altered motifs | 36 hits | ADCY3 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 50718253 | 1 | 1 | rs62029864 | G | A | 0.05 | 0.15 | 0.00 | 0.22 | FAT, SKIN | 6 tissues | 6 tissues | GATA2 | GR,Irf,Nkx2 | 1 hit | NOD2 | intronic | |||
| 16 | 50722970 | 1 | 1 | rs2076756 | A | G | 0.05 | 0.15 | 0.00 | 0.22 | BLD | Mef2,Nanog | 6 hits | 1 hit | 3 hits | NOD2 | intronic | ||||
| 16 | 50724938 | 1 | 1 | rs749910 | G | A | 0.05 | 0.15 | 0.00 | 0.22 | BLD | LNG | HEY1,TATA | 1 hit | NOD2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 8 | 125522429 | 1 | 1 | rs921720 | A | G | 0.13 | 0.53 | 0.41 | 0.63 | 8 tissues | 6 tissues | 2 hits | 260 hits | RP11-136O12.2 | ||||||
| 8 | 125523895 | 1 | 1 | rs10956252 | C | G | 0.13 | 0.53 | 0.41 | 0.63 | HRT | RP11-136O12.2 | |||||||||
| 8 | 125524937 | 1 | 1 | rs55867617 | C | G | 0.13 | 0.53 | 0.41 | 0.63 | 10 tissues | CRVX | CEBPB,JUND | 6 altered motifs | RP11-136O12.2 | ||||||
| 8 | 125525328 | 1 | 1 | rs4871611 | G | A | 0.13 | 0.53 | 0.36 | 0.63 | CRVX | 11 tissues | 11 tissues | 4 bound proteins | GR | 1 hit | RP11-136O12.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 13 | 43883789 | 1 | 1 | rs3764147 | A | G | 0.33 | 0.37 | 0.32 | 0.24 | FAT | 6 tissues | 5 altered motifs | 4 hits | 321 hits | 17 hits | LACC1 | missense | |||
| 13 | 43886106 | 1 | 1 | rs1932990 | C | T | 0.33 | 0.37 | 0.32 | 0.24 | 9 altered motifs | 17 hits | LACC1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 172884320 | 1 | 1 | rs7517810 | C | T | 0.23 | 0.49 | 0.89 | 0.24 | 9 tissues | MUS | 1 hit | 146 hits | 1 hit | RP1-15D23.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 67234232 | 1 | 1 | rs79755370 | C | A | 0.01 | 0.06 | 0.00 | 0.06 | 29 tissues | 4 bound proteins | IL23R | intronic | |||||||
| 1 | 67240275 | 1 | 1 | rs11209026 | G | A | 0.01 | 0.06 | 0.00 | 0.06 | GR | 15 hits | 3 hits | IL23R | missense | ||||||
| 1 | 67242007 | 1 | 1 | rs11581607 | G | A | 0.01 | 0.06 | 0.00 | 0.06 | 4 altered motifs | IL23R | intronic | ||||||||
| 1 | 67247663 | 1 | 1 | rs113935720 | T | C | 0.01 | 0.06 | 0.00 | 0.06 | 4 altered motifs | IL23R | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 12 | 40362670 | 1 | 1 | rs4768236 | C | A | 0.47 | 0.56 | 0.44 | 0.69 | KAP1,ZBRK1 | 1 hit | LRRK2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 12 | 40366962 | 1 | 1 | rs3789329 | T | C | 0.01 | 0.17 | 0.04 | 0.02 | HNF1,Irx,TATA | 1 hit | LRRK2 | intronic | |||||||
| 12 | 40369211 | 1 | 1 | rs12422278 | T | A | 0.01 | 0.17 | 0.04 | 0.02 | 5 altered motifs | 1 hit | LRRK2 | 3'-UTR | |||||||
| 12 | 40375103 | 1 | 1 | rs12422527 | T | C | 0.01 | 0.17 | 0.04 | 0.02 | CTCF | GR | 1 hit | 5.8kb 3' of LRRK2 | |||||||
| 12 | 40375119 | 1 | 1 | rs139236560 | CAT | C | 0.01 | 0.17 | 0.04 | 0.02 | CTCF | 9 altered motifs | 1 hit | 5.8kb 3' of LRRK2 | |||||||
| 12 | 40376669 | 1 | 1 | rs17497325 | T | C | 0.01 | 0.17 | 0.04 | 0.02 | Osr | 1 hit | 7.4kb 3' of LRRK2 | ||||||||
| 12 | 40378949 | 1 | 1 | rs17466738 | C | T | 0.01 | 0.17 | 0.04 | 0.02 | BRN,BRN,GI | AIRE | 1 hit | 9.7kb 3' of LRRK2 | |||||||
| 12 | 40379138 | 1 | 1 | rs117366914 | C | A | 0.01 | 0.17 | 0.04 | 0.02 | BRN | PPAR,RXRA | 1 hit | 9.9kb 3' of LRRK2 | |||||||
| 12 | 40381325 | 1 | 1 | rs117780447 | G | C | 0.01 | 0.17 | 0.04 | 0.02 | 4 altered motifs | 1 hit | 12kb 3' of LRRK2 | ||||||||
| 12 | 40383856 | 1 | 1 | rs12424494 | G | A | 0.01 | 0.17 | 0.04 | 0.02 | CDP,Maf,TATA | 1 hit | 9.5kb 5' of MUC19 | ||||||||
| 12 | 40384323 | 1 | 1 | rs150236143 | G | T | 0.02 | 0.17 | 0.04 | 0.02 | HDAC2,Sox,TLX1::NFIC | 1 hit | 9.1kb 5' of MUC19 | ||||||||
| 12 | 40390616 | 1 | 1 | rs17466893 | G | A | 0.01 | 0.16 | 0.03 | 0.02 | LIV | STAT | 1 hit | 2.8kb 5' of MUC19 | |||||||
| 12 | 40390772 | 1 | 1 | rs17466907 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | LIV | Pdx1 | 1 hit | 2.6kb 5' of MUC19 | |||||||
| 12 | 40393026 | 1 | 1 | rs17466969 | A | T | 0.01 | 0.15 | 0.03 | 0.02 | 6 altered motifs | 1 hit | 368bp 5' of MUC19 | ||||||||
| 12 | 40393462 | 1 | 1 | rs148698440 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | MUC19 | synonymous | ||||||||
| 12 | 40394796 | 1 | 1 | rs73094961 | C | T | 0.03 | 0.16 | 0.03 | 0.02 | MUC19 | intronic | |||||||||
| 12 | 40394845 | 1 | 1 | rs141037287 | G | C | 0.01 | 0.15 | 0.03 | 0.02 | ATF3 | 1 hit | MUC19 | intronic | |||||||
| 12 | 40395388 | 1 | 1 | rs117222477 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | 4 altered motifs | 1 hit | MUC19 | intronic | |||||||
| 12 | 40395414 | 1 | 1 | rs117144345 | G | T | 0.01 | 0.15 | 0.03 | 0.02 | CIZ,HDAC2,Irf | 1 hit | MUC19 | intronic | |||||||
| 12 | 40395606 | 1 | 1 | rs144214850 | TG | T | 0.01 | 0.15 | 0.03 | 0.02 | 9 altered motifs | 1 hit | MUC19 | intronic | |||||||
| 12 | 40395654 | 1 | 1 | rs141893556 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | 29 altered motifs | 1 hit | MUC19 | intronic | |||||||
| 12 | 40395856 | 1 | 1 | rs117887879 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | 10 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40396160 | 1 | 1 | rs1365762 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | HNF1,Pou2f2,Pou5f1 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40396728 | 1 | 1 | rs11564264 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | HDAC2,Sox | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40397122 | 1 | 1 | rs11564262 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | DMRT4,Gfi1 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40397605 | 1 | 1 | rs117929583 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | 10 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40398050 | 1 | 1 | rs145665119 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | 7 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40398128 | 1 | 1 | rs3909731 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40398395 | 1 | 1 | rs11564259 | G | C | 0.01 | 0.15 | 0.03 | 0.02 | Maf,TEF-1 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40398498 | 1 | 1 | rs11564258 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | AP-4,Hbp1 | 2 hits | 1 hit | RP11-115F18.1 | intronic | ||||||
| 12 | 40398901 | 1 | 1 | rs971615 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | Gfi1,SZF1-1 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40399054 | 1 | 1 | rs971616 | T | G | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40399175 | 1 | 1 | rs971617 | G | T | 0.01 | 0.15 | 0.03 | 0.02 | HMG-IY,HNF4,Irf | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40399658 | 1 | 1 | rs77719105 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | 9 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40399713 | 1 | 1 | rs78300565 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | Maf | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40399773 | 1 | 1 | rs199703399 | G | GTTT | 0.01 | 0.15 | 0.03 | 0.02 | 7 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40400097 | 1 | 1 | rs2017917 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | Foxq1,Mef2 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40400491 | 1 | 1 | rs3899331 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | 6 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40400650 | 1 | 1 | rs3899332 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40401219 | 1 | 1 | rs17444626 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40402484 | 1 | 1 | rs4768248 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | Myc | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40402532 | 1 | 1 | rs4768249 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | GATA | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40402563 | 1 | 1 | rs4768251 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | 6 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40403236 | 1 | 1 | rs17467039 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | GR | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40403403 | 1 | 1 | rs17444646 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | EWSR1-FLI1 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40403584 | 1 | 1 | rs144873199 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | Zbtb3 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40403709 | 1 | 1 | rs146687709 | T | A | 0.01 | 0.15 | 0.03 | 0.02 | Pdx1 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40403780 | 1 | 1 | rs117725664 | T | G | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40404060 | 1 | 1 | rs117033661 | G | T | 0.01 | 0.15 | 0.03 | 0.02 | ZID | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40404394 | 1 | 1 | rs149344784 | T | C | 0.01 | 0.14 | 0.03 | 0.02 | ERalpha-a,Nr2f2 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40404420 | 1 | 1 | rs186316711 | C | G | 0.00 | 0.14 | 0.03 | 0.02 | Pou2f2,TAL1,ZNF219 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40404464 | 1 | 1 | rs147045449 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | CACD | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40404469 | 1 | 1 | rs138361990 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40404611 | 1 | 1 | rs11564256 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40404740 | 1 | 1 | rs143926317 | T | A | 0.01 | 0.15 | 0.03 | 0.02 | 5 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40405475 | 1 | 1 | rs17444667 | C | A | 0.01 | 0.15 | 0.03 | 0.02 | ESDR, ESC, IPSC | IPSC | 1 hit | RP11-115F18.1 | intronic | ||||||
| 12 | 40406131 | 1 | 1 | rs201098338 | C | 10-mer | 0.00 | 0.14 | 0.03 | 0.02 | BRST | BRST,BRST | Znf143 | 1 hit | RP11-115F18.1 | synonymous | |||||
| 12 | 40407494 | 1 | 1 | rs117591458 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | 5 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40407728 | 1 | 1 | rs12426903 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | BCL,NF-kappaB | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40409327 | 1 | 1 | rs12422390 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | 7 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40409392 | 1 | 1 | rs12423986 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | Hoxd10 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40410163 | 1 | 1 | rs17444681 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | PLZF | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40410291 | 1 | 1 | rs17444688 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | 4 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40410693 | 1 | 1 | rs146427470 | T | G | 0.01 | 0.15 | 0.03 | 0.02 | Gfi1,Pax-5,RREB-1 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40410731 | 1 | 1 | rs17467081 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | MUS | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40411345 | 1 | 1 | rs11564255 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | AP-3 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40411527 | 1 | 1 | rs117867889 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40411865 | 1 | 1 | rs17467095 | C | A | 0.01 | 0.15 | 0.03 | 0.02 | ESC | 5 altered motifs | 1 hit | RP11-115F18.1 | intronic | ||||||
| 12 | 40411875 | 1 | 1 | rs17444702 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | ESC | 5 altered motifs | 1 hit | RP11-115F18.1 | intronic | ||||||
| 12 | 40412792 | 1 | 1 | rs17467102 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | TATA,Zfp410 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40412908 | 1 | 1 | rs17467109 | A | C | 0.01 | 0.15 | 0.03 | 0.02 | ERalpha-a,Pou1f1 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40413030 | 1 | 1 | rs117908462 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | HNF1,Myc | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40413109 | 1 | 1 | rs74565412 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40413155 | 1 | 1 | rs75697282 | A | G | 0.01 | 0.15 | 0.04 | 0.02 | Pou2f2,TATA | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40413295 | 1 | 1 | rs12427134 | C | T | 0.01 | 0.16 | 0.03 | 0.02 | 6 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40413327 | 1 | 1 | rs12424424 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | 8 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40413925 | 1 | 1 | rs17492152 | C | A | 0.01 | 0.15 | 0.03 | 0.02 | 4 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40414074 | 1 | 1 | rs17444744 | T | G | 0.01 | 0.15 | 0.03 | 0.02 | ESC | 12 altered motifs | 1 hit | RP11-115F18.1 | intronic | ||||||
| 12 | 40414128 | 1 | 1 | rs17444751 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | ESC | 6 altered motifs | 1 hit | RP11-115F18.1 | intronic | ||||||
| 12 | 40414191 | 1 | 1 | rs75200805 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | ESC | Pou1f1,Pou2f2 | 1 hit | RP11-115F18.1 | intronic | ||||||
| 12 | 40414428 | 1 | 1 | rs181457935 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | Gfi1,HDAC2,Sox | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40414870 | 1 | 1 | rs4768252 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | 6 altered motifs | 1 hit | RP11-115F18.1 | missense | |||||||
| 12 | 40414924 | 1 | 1 | rs4768253 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | missense | ||||||||
| 12 | 40414997 | 1 | 1 | rs4768254 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | 24 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40415251 | 1 | 1 | rs148124094 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40415388 | 1 | 1 | rs117021749 | G | C | 0.01 | 0.15 | 0.03 | 0.02 | STAT | 1 hit | RP11-115F18.1 | missense | |||||||
| 12 | 40415404 | 1 | 1 | rs191075898 | T | C | 0.00 | 0.13 | 0.03 | 0.02 | 5 altered motifs | 1 hit | RP11-115F18.1 | synonymous | |||||||
| 12 | 40415454 | 1 | 1 | rs80220485 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | 6 altered motifs | 1 hit | RP11-115F18.1 | missense | |||||||
| 12 | 40415536 | 1 | 1 | rs117909126 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | 7 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40415700 | 1 | 1 | rs17467137 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | 5 altered motifs | 1 hit | RP11-115F18.1 | synonymous | |||||||
| 12 | 40415948 | 1 | 1 | rs11564253 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | Ets | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40416181 | 1 | 1 | rs142268259 | C | A | 0.01 | 0.15 | 0.03 | 0.02 | HDAC2,RORalpha1 | 1 hit | RP11-115F18.1 | missense | |||||||
| 12 | 40416305 | 1 | 1 | rs183347939 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | Irf,Pou2f2 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40416307 | 1 | 1 | rs143377635 | A | AT | 0.01 | 0.15 | 0.03 | 0.02 | 6 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40416359 | 1 | 1 | rs17467144 | G | A | 0.01 | 0.16 | 0.03 | 0.02 | 11 altered motifs | 1 hit | RP11-115F18.1 | missense | |||||||
| 12 | 40416375 | 1 | 1 | rs117237084 | A | G | 0.01 | 0.16 | 0.03 | 0.02 | 5 altered motifs | 1 hit | RP11-115F18.1 | missense | |||||||
| 12 | 40416411 | 1 | 1 | rs118081441 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | Isl2,RXRA,Sox | 1 hit | RP11-115F18.1 | missense | |||||||
| 12 | 40416436 | 1 | 1 | rs116946443 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | RXRA,ZEB1 | 1 hit | RP11-115F18.1 | splice donor | |||||||
| 12 | 40416651 | 1 | 1 | rs144495455 | A | C | 0.01 | 0.15 | 0.03 | 0.02 | PLCNT | Gmeb1 | 1 hit | RP11-115F18.1 | intronic | ||||||
| 12 | 40416807 | 1 | 1 | rs139590240 | C | A | 0.01 | 0.15 | 0.03 | 0.02 | CHD2 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40416850 | 1 | 1 | rs143615969 | A | C | 0.01 | 0.15 | 0.03 | 0.02 | 4 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40417020 | 1 | 1 | rs147196025 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | CTCF,Rad21 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40417022 | 1 | 1 | rs140578439 | G | C | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40417160 | 1 | 1 | rs17444765 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | Rad21 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40417863 | 1 | 1 | rs11564145 | G | C | 0.01 | 0.15 | 0.03 | 0.02 | Foxp3,Spz1 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40418046 | 1 | 1 | rs141315343 | T | G | 0.01 | 0.15 | 0.03 | 0.02 | ATF3 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40418346 | 1 | 1 | rs7487333 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | PLZF | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40418405 | 1 | 1 | rs7485401 | T | A | 0.01 | 0.15 | 0.03 | 0.02 | 4 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40418456 | 1 | 1 | rs35462920 | T | A | 0.01 | 0.16 | 0.03 | 0.02 | Foxp1,Mef2 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40418508 | 1 | 1 | rs7487209 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | 7 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40418590 | 1 | 1 | rs5015147 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40418617 | 1 | 1 | rs5015148 | T | G | 0.01 | 0.15 | 0.03 | 0.02 | Foxp1,Sox,Zfp105 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40418692 | 1 | 1 | rs5015149 | A | T | 0.01 | 0.15 | 0.03 | 0.02 | 6 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40418836 | 1 | 1 | rs148180074 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | 4 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40418949 | 1 | 1 | rs150306906 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40419071 | 1 | 1 | rs118122990 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | Ets | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40419094 | 1 | 1 | rs117435671 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | RBP-Jkappa | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40419139 | 1 | 1 | rs117844952 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | Bbx | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40419609 | 1 | 1 | rs149308025 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | AP-1,Rad21 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40419647 | 1 | 1 | rs116911200 | A | C | 0.01 | 0.15 | 0.03 | 0.02 | MZF1::1-4 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40419768 | 1 | 1 | rs76672535 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | 5 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40419924 | 1 | 1 | rs117482806 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | DMRT1,SRF | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40420013 | 1 | 1 | rs17467157 | A | T | 0.01 | 0.15 | 0.03 | 0.02 | Nkx3,Pou1f1,Pou2f2 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40420305 | 1 | 1 | rs2114566 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | Zbtb3 | 1 hit | RP11-115F18.1 | missense | |||||||
| 12 | 40420395 | 1 | 1 | rs17467164 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | Mef2,SRF,THAP1 | 1 hit | RP11-115F18.1 | missense | |||||||
| 12 | 40420465 | 1 | 1 | rs17467171 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | 4 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40420468 | 1 | 1 | rs17467178 | A | T | 0.01 | 0.15 | 0.03 | 0.02 | 9 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40420548 | 1 | 1 | rs200903764 | TTGA | T | 0.01 | 0.15 | 0.03 | 0.02 | 6 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40420782 | 1 | 1 | rs4768258 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | Eomes,Pou2f2 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40420859 | 1 | 1 | rs4768259 | C | A | 0.01 | 0.15 | 0.03 | 0.02 | CTCFL | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40421205 | 1 | 1 | rs80212515 | C | G | 0.01 | 0.15 | 0.03 | 0.02 | Cdx,Foxp1,HNF1 | 1 hit | RP11-115F18.1 | splice acceptor | |||||||
| 12 | 40421258 | 1 | 1 | rs149221842 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | AP-1,GR | 1 hit | RP11-115F18.1 | missense | |||||||
| 12 | 40421459 | 1 | 1 | rs116937891 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | Foxq1,GATA,p300 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40421496 | 1 | 1 | rs148144443 | TTAA | T | 0.01 | 0.16 | 0.03 | 0.02 | 12 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40421758 | 1 | 1 | rs11176553 | C | T | 0.02 | 0.15 | 0.03 | 0.02 | 8 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40422409 | 1 | 1 | rs200610116 | TTTTG | T | 0.01 | 0.15 | 0.03 | 0.02 | 14 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40422655 | 1 | 1 | rs201714398 | A | ATCTT | 0.01 | 0.15 | 0.03 | 0.02 | 11 altered motifs | RP11-115F18.1 | intronic | ||||||||
| 12 | 40422679 | 1 | 1 | rs138069086 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40422702 | 1 | 1 | rs77099153 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40422942 | 1 | 1 | rs12425211 | T | G | 0.01 | 0.15 | 0.03 | 0.02 | 7 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40423220 | 1 | 1 | rs148542465 | T | G | 0.01 | 0.15 | 0.03 | 0.02 | CAC-binding-protein | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40423254 | 1 | 1 | rs117036566 | G | T | 0.01 | 0.15 | 0.03 | 0.02 | BCL,CTCF,PLZF | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40423437 | 1 | 1 | rs144937184 | A | G | 0.01 | 0.16 | 0.03 | 0.02 | GLI,Pax-4 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40423557 | 1 | 1 | rs17467185 | T | G | 0.01 | 0.15 | 0.03 | 0.02 | 25 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40423646 | 1 | 1 | rs147968276 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | 9 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40424016 | 1 | 1 | rs145798252 | G | C | 0.01 | 0.16 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40424077 | 1 | 1 | rs138435304 | A | G | 0.01 | 0.16 | 0.03 | 0.02 | Foxl1,Msx-1,Pdx1 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40424193 | 1 | 1 | rs11564144 | A | C | 0.01 | 0.16 | 0.03 | 0.02 | 9 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40424366 | 1 | 1 | rs11176564 | C | T | 0.01 | 0.16 | 0.03 | 0.02 | IPSC | HNF4,Nanog,Sin3Ak-20 | 1 hit | RP11-115F18.1 | intronic | ||||||
| 12 | 40424648 | 1 | 1 | rs12425677 | T | C | 0.01 | 0.16 | 0.03 | 0.02 | CDP,TEF-1 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40424660 | 1 | 1 | rs12425678 | T | C | 0.01 | 0.16 | 0.03 | 0.02 | GR | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40425369 | 1 | 1 | rs150011257 | C | T | 0.01 | 0.16 | 0.03 | 0.02 | Zfx | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40425387 | 1 | 1 | rs144318248 | A | C | 0.01 | 0.16 | 0.03 | 0.02 | 5 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40425593 | 1 | 1 | rs201448645 | TC | T | 0.01 | 0.16 | 0.03 | 0.02 | 23 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40425922 | 1 | 1 | rs11564250 | A | G | 0.01 | 0.16 | 0.03 | 0.02 | GATA,Zfp410 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40426147 | 1 | 1 | rs17444840 | G | A | 0.01 | 0.16 | 0.03 | 0.02 | 4 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40426199 | 1 | 1 | rs11564126 | A | G | 0.01 | 0.16 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40426322 | 1 | 1 | rs17467213 | G | A | 0.01 | 0.16 | 0.03 | 0.02 | 5 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40426363 | 1 | 1 | rs17462180 | T | A | 0.01 | 0.16 | 0.03 | 0.02 | 15 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40426601 | 1 | 1 | rs11564249 | C | T | 0.01 | 0.16 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | synonymous | ||||||||
| 12 | 40427060 | 1 | 1 | rs17444875 | G | A | 0.01 | 0.16 | 0.03 | 0.02 | Foxk1,Nr2e3 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40427357 | 1 | 1 | rs17467249 | T | G | 0.01 | 0.16 | 0.03 | 0.02 | 5 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40427476 | 1 | 1 | rs17467263 | G | C | 0.01 | 0.16 | 0.03 | 0.02 | BHLHE40,Rad21,TBX5 | 1 hit | RP11-115F18.1 | missense | |||||||
| 12 | 40427633 | 1 | 1 | rs11564143 | A | G | 0.01 | 0.16 | 0.03 | 0.02 | DBP,NF-I | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40427943 | 1 | 1 | rs17444903 | T | A | 0.01 | 0.15 | 0.03 | 0.02 | 5 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40427993 | 1 | 1 | rs61736852 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | HDAC2,Irf,TATA | 1 hit | RP11-115F18.1 | missense | |||||||
| 12 | 40428045 | 1 | 1 | rs11564170 | C | A | 0.01 | 0.15 | 0.03 | 0.02 | NF-AT,NF-AT1 | 1 hit | RP11-115F18.1 | missense | |||||||
| 12 | 40428069 | 1 | 1 | rs17467284 | G | T | 0.01 | 0.15 | 0.03 | 0.02 | Bcl6b,p53 | 1 hit | RP11-115F18.1 | missense | |||||||
| 12 | 40428158 | 1 | 1 | rs17467291 | T | G | 0.01 | 0.15 | 0.03 | 0.02 | Pou2f2,TATA | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40428296 | 1 | 1 | rs117981694 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | Bcl6b | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40428544 | 1 | 1 | rs11564246 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | 4 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40428795 | 1 | 1 | rs145671396 | G | A | 0.00 | 0.15 | 0.03 | 0.02 | 8 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40429020 | 1 | 1 | rs80118503 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | AFP1,Mef2,Pax-4 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40429195 | 1 | 1 | rs77220017 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | Nr2e3,Nr2f2 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40429200 | 1 | 1 | rs75771828 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | CEBPB | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40429416 | 1 | 1 | rs11564111 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | GR,Nanog,Sox | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40429428 | 1 | 1 | rs80205770 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | 4 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40429672 | 1 | 1 | rs10506156 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | BDP1,CTCF,Rad21 | 1 hit | RP11-115F18.1 | missense | |||||||
| 12 | 40429691 | 1 | 1 | rs10506157 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | Arid5a,Foxa | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40429853 | 1 | 1 | rs143228478 | G | GTA | 0.01 | 0.15 | 0.03 | 0.02 | 7 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40430352 | 1 | 1 | rs10506158 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | NERF1a,PLZF | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40430419 | 1 | 1 | rs189186053 | A | C | 0.01 | 0.14 | 0.03 | 0.02 | 5 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40430432 | 1 | 1 | rs78437109 | G | A | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40430464 | 1 | 1 | rs35673053 | G | T | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40430574 | 1 | 1 | rs11564244 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | 4 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40431146 | 1 | 1 | rs10506159 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | GATA,STAT,Smad3 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40431306 | 1 | 1 | rs11564242 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | MAFF,MAFK | CTCF,SRF | 1 hit | RP11-115F18.1 | intronic | ||||||
| 12 | 40431415 | 1 | 1 | rs11564241 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | MAFF,MAFK | Pou2f2 | 1 hit | RP11-115F18.1 | intronic | ||||||
| 12 | 40431533 | 1 | 1 | rs11564114 | T | A | 0.01 | 0.15 | 0.03 | 0.02 | DMRT4,E2F,Irf | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40431740 | 1 | 1 | rs11564240 | C | G | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40431797 | 1 | 1 | rs146015937 | AAGAAG | A | 0.01 | 0.15 | 0.03 | 0.02 | Pou2f2,Pou6f1 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40431913 | 1 | 1 | rs10506160 | C | A | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40432219 | 1 | 1 | rs11564169 | G | T | 0.01 | 0.15 | 0.03 | 0.02 | 9 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40432248 | 1 | 1 | rs75197709 | T | A | 0.01 | 0.15 | 0.03 | 0.02 | HP1-site-factor,Mef2,TATA | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40432336 | 1 | 1 | rs143218501 | T | G | 0.01 | 0.15 | 0.03 | 0.02 | 4 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40432520 | 1 | 1 | rs10506161 | C | T | 0.01 | 0.15 | 0.03 | 0.02 | 5 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40432595 | 1 | 1 | rs142614989 | CAT | C | 0.01 | 0.15 | 0.03 | 0.02 | 16 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40432733 | 1 | 1 | rs11564104 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | 4 altered motifs | 1 hit | RP11-115F18.1 | synonymous | |||||||
| 12 | 40432837 | 1 | 1 | rs150783999 | CTTAA | C | 0.01 | 0.15 | 0.03 | 0.02 | 36 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40432885 | 1 | 1 | rs79306701 | T | A | 0.01 | 0.15 | 0.03 | 0.02 | 1 hit | RP11-115F18.1 | intronic | ||||||||
| 12 | 40432959 | 1 | 1 | rs141522472 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | Pou2f2 | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40433279 | 1 | 1 | rs10506163 | A | G | 0.01 | 0.15 | 0.03 | 0.02 | SKIN | 9 altered motifs | 1 hit | RP11-115F18.1 | intronic | ||||||
| 12 | 40433416 | 1 | 1 | rs76476033 | C | A | 0.01 | 0.15 | 0.03 | 0.02 | BLD | CDP,FXR,Pax-2 | 1 hit | RP11-115F18.1 | intronic | ||||||
| 12 | 40434020 | 1 | 1 | rs11564238 | T | G | 0.01 | 0.15 | 0.03 | 0.02 | Fox,GR | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40434089 | 1 | 1 | rs17444966 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | 10 altered motifs | 1 hit | RP11-115F18.1 | intronic | |||||||
| 12 | 40434217 | 1 | 1 | rs11564237 | T | C | 0.01 | 0.15 | 0.03 | 0.02 | GR | 1 hit | RP11-115F18.1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 22 | 39263768 | 1 | 1 | rs2413583 | C | T | 0.32 | 0.14 | 0.04 | 0.16 | BLD, LIV | Dobox4,SREBP,Zfp410 | 2 hits | 70 hits | 1 hit | 2.7kb 5' of AL031590.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 132448701 | 1 | 1 | rs12521868 | G | T | 0.05 | 0.28 | 0.00 | 0.38 | 7 tissues | 5 altered motifs | 1 hit | 5 hits | 45 hits | C5orf56 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 19 | 1123653 | 1 | 1 | rs4807570 | G | A | 0.31 | 0.33 | 0.13 | 0.20 | ESDR | 10 tissues | 4 tissues | 6 altered motifs | 3 hits | SBNO2 | intronic | ||||
| 19 | 1124032 | 1 | 1 | rs2024092 | G | A | 0.32 | 0.33 | 0.13 | 0.20 | 10 tissues | 5 tissues | 5 altered motifs | 1 hit | 452 hits | 4 hits | SBNO2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 19 | 48702851 | 1 | 1 | rs679574 | C | G | 0.49 | 0.38 | 0.01 | 0.43 | SPLN | RREB-1 | 31 hits | FUT2 | intronic | ||||||
| 19 | 48702888 | 1 | 1 | rs516316 | G | C | 0.49 | 0.38 | 0.01 | 0.43 | SPLN | Myc,Nrf1 | 1 hit | 30 hits | FUT2 | intronic | |||||
| 19 | 48702915 | 1 | 1 | rs516246 | C | T | 0.49 | 0.38 | 0.01 | 0.43 | SPLN | 8 altered motifs | 3 hits | 178 hits | 31 hits | FUT2 | intronic | ||||
| 19 | 48703205 | 1 | 1 | rs681343 | C | T | 0.49 | 0.38 | 0.01 | 0.43 | 1 hit | 31 hits | FUT2 | synonymous | |||||||
| 19 | 48703417 | 1 | 1 | rs601338 | G | A | 0.49 | 0.38 | 0.01 | 0.43 | HDAC2,HNF4 | 2 hits | 31 hits | FUT2 | nonsense |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 18 | 12818923 | 1 | 1 | rs80262450 | G | A | 0.01 | 0.03 | 0.14 | 0.11 | BRN | Mef2,ZBTB33 | 4 hits | PTPN2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 166959276 | 1 | 1 | rs2149090 | T | C | 0.76 | 0.57 | 0.61 | 0.52 | 4 tissues | 11 tissues | 8 tissues | POL2,NFKB,GATA2 | 7 altered motifs | 17 hits | 2.1kb 5' of RNASET2 | ||||
| 6 | 166959298 | 1 | 1 | rs2149091 | C | T | 0.76 | 0.57 | 0.61 | 0.52 | 4 tissues | 11 tissues | 11 tissues | POL2,NFKB,GATA2 | GATA,TAL1 | 19 hits | 2.1kb 5' of RNASET2 | ||||
| 6 | 166959490 | 1 | 1 | rs2149092 | C | T | 0.76 | 0.57 | 0.61 | 0.52 | 4 tissues | 13 tissues | 27 tissues | 15 bound proteins | 11 altered motifs | 17 hits | 2.3kb 5' of RNASET2 | ||||
| 6 | 166960059 | 1 | 1 | rs1819333 | T | G | 0.76 | 0.57 | 0.61 | 0.52 | BLD, LIV | 14 tissues | 12 tissues | CFOS | AP-1,BDP1,NF-I | 1 hit | 342 hits | 19 hits | 2.9kb 5' of RNASET2 | ||
| 6 | 166960324 | 1 | 1 | rs2013815 | T | A | 0.76 | 0.57 | 0.61 | 0.52 | 6 tissues | 4 tissues | CFOS | 17 hits | 3.1kb 5' of RNASET2 | ||||||
| 6 | 166960631 | 1 | 1 | rs2769349 | G | A | 0.76 | 0.57 | 0.61 | 0.52 | 4 tissues | FAC1,Mef2,SIX5 | 17 hits | 3.4kb 5' of RNASET2 | |||||||
| 6 | 166960751 | 1 | 1 | rs4710147 | G | A | 0.75 | 0.57 | 0.61 | 0.52 | BLD, GI, LIV | BLD,THYM | 4 altered motifs | 19 hits | 3.6kb 5' of RNASET2 | ||||||
| 6 | 166960865 | 1 | 1 | rs2757046 | C | T | 0.76 | 0.57 | 0.61 | 0.52 | BLD, GI, LIV | BLD | Pax-5 | 17 hits | 3.7kb 5' of RNASET2 | ||||||
| 6 | 166961001 | 1 | 1 | rs2757047 | C | T | 0.76 | 0.57 | 0.61 | 0.52 | BLD, GI, LIV | 6 altered motifs | 17 hits | 3.8kb 5' of RNASET2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 99524480 | 1 | 1 | rs4409764 | T | G | 0.40 | 0.57 | 0.53 | 0.52 | GI | 6 tissues | 6 tissues | Mrg,Sox,Tgif1 | 2 hits | 136 hits | 8 hits | 1.9kb 3' of RP11-129J12.2 | |||
| 10 | 99524588 | 1 | 1 | rs4129134 | C | G | 0.44 | 0.57 | 0.53 | 0.52 | GI | 6 tissues | 4 tissues | 8 altered motifs | 8 hits | 1.8kb 3' of RP11-129J12.2 | |||||
| 10 | 99524813 | 1 | 1 | rs4129133 | T | C | 0.40 | 0.57 | 0.53 | 0.52 | 6 tissues | ESC | 8 hits | 1.5kb 3' of RP11-129J12.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 62678726 | 1 | 1 | rs10995271 | G | C | 0.17 | 0.28 | 0.54 | 0.39 | KAP1,Smad | 1 hit | 2 hits | 5 hits | 6.7kb 3' of ZNF365 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 15 | 67150258 | 1 | 1 | rs17293632 | C | T | 0.02 | 0.14 | 0.03 | 0.21 | 17 tissues | 20 tissues | 41 tissues | 24 bound proteins | 25 altered motifs | 2 hits | 315 hits | 2 hits | SMAD3 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 19 | 10402235 | 1 | 1 | rs11879191 | G | A | 0.17 | 0.18 | 0.46 | 0.18 | 21 tissues | 11 tissues | 21 tissues | RXRA,Spz1,ZBTB33 | 1 hit | 157 hits | 15 hits | CDC37 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 17 | 27516617 | 1 | 1 | rs2945412 | G | A | 0.81 | 0.65 | 0.31 | 0.59 | 5 tissues | Foxp1,TCF4 | 1 hit | 269 hits | 9 hits | KSR1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 12 | 40337211 | 1 | 1 | rs10506154 | A | G | 0.01 | 0.16 | 0.03 | 0.02 | 12 altered motifs | 1 hit | LRRK2 | intronic | |||||||
| 12 | 40346421 | 1 | 1 | rs148319899 | T | C | 0.01 | 0.16 | 0.03 | 0.02 | Dbx1 | 1 hit | LRRK2 | intronic | |||||||
| 12 | 40347071 | 1 | 1 | rs17484493 | T | C | 0.01 | 0.16 | 0.03 | 0.02 | 15 altered motifs | 1 hit | LRRK2 | intronic | |||||||
| 12 | 40351975 | 1 | 1 | rs12426639 | A | T | 0.01 | 0.16 | 0.03 | 0.02 | ESC, IPSC, BRN | 4 altered motifs | 1 hit | LRRK2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 150898347 | 1 | 1 | rs11741861 | A | G | 0.06 | 0.12 | 0.41 | 0.09 | NF-I | 1 hit | 142 hits | 44 hits | IRGM | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 15 | 67150258 | 1 | 1 | rs17293632 | C | T | 0.02 | 0.14 | 0.03 | 0.21 | 17 tissues | 20 tissues | 41 tissues | 24 bound proteins | 25 altered motifs | 2 hits | 315 hits | 2 hits | SMAD3 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 166959276 | 1 | 1 | rs2149090 | T | C | 0.76 | 0.57 | 0.61 | 0.52 | 4 tissues | 11 tissues | 8 tissues | POL2,NFKB,GATA2 | 7 altered motifs | 17 hits | 2.1kb 5' of RNASET2 | ||||
| 6 | 166959298 | 1 | 1 | rs2149091 | C | T | 0.76 | 0.57 | 0.61 | 0.52 | 4 tissues | 11 tissues | 11 tissues | POL2,NFKB,GATA2 | GATA,TAL1 | 19 hits | 2.1kb 5' of RNASET2 | ||||
| 6 | 166959490 | 1 | 1 | rs2149092 | C | T | 0.76 | 0.57 | 0.61 | 0.52 | 4 tissues | 13 tissues | 27 tissues | 15 bound proteins | 11 altered motifs | 17 hits | 2.3kb 5' of RNASET2 | ||||
| 6 | 166960059 | 1 | 1 | rs1819333 | T | G | 0.76 | 0.57 | 0.61 | 0.52 | BLD, LIV | 14 tissues | 12 tissues | CFOS | AP-1,BDP1,NF-I | 1 hit | 342 hits | 19 hits | 2.9kb 5' of RNASET2 | ||
| 6 | 166960324 | 1 | 1 | rs2013815 | T | A | 0.76 | 0.57 | 0.61 | 0.52 | 6 tissues | 4 tissues | CFOS | 17 hits | 3.1kb 5' of RNASET2 | ||||||
| 6 | 166960631 | 1 | 1 | rs2769349 | G | A | 0.76 | 0.57 | 0.61 | 0.52 | 4 tissues | FAC1,Mef2,SIX5 | 17 hits | 3.4kb 5' of RNASET2 | |||||||
| 6 | 166960751 | 1 | 1 | rs4710147 | G | A | 0.75 | 0.57 | 0.61 | 0.52 | BLD, GI, LIV | BLD,THYM | 4 altered motifs | 19 hits | 3.6kb 5' of RNASET2 | ||||||
| 6 | 166960865 | 1 | 1 | rs2757046 | C | T | 0.76 | 0.57 | 0.61 | 0.52 | BLD, GI, LIV | BLD | Pax-5 | 17 hits | 3.7kb 5' of RNASET2 | ||||||
| 6 | 166961001 | 1 | 1 | rs2757047 | C | T | 0.76 | 0.57 | 0.61 | 0.52 | BLD, GI, LIV | 6 altered motifs | 17 hits | 3.8kb 5' of RNASET2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 79272775 | 1 | 1 | rs1250546 | A | G | 0.16 | 0.33 | 0.47 | 0.37 | 15 tissues | 1 hit | 105 hits | ZMIZ1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 15 | 67150258 | 1 | 1 | rs17293632 | C | T | 0.02 | 0.14 | 0.03 | 0.21 | 17 tissues | 20 tissues | 41 tissues | 24 bound proteins | 25 altered motifs | 2 hits | 315 hits | 2 hits | SMAD3 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 9 | 114818634 | 1 | 1 | rs7869487 | C | T | 0.95 | 0.78 | 0.58 | 0.70 | 4 altered motifs | 2 hits | 13kb 5' of TNFSF15 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 150877492 | 1 | 1 | rs9324660 | C | G | 0.47 | 0.15 | 0.44 | 0.09 | Mtf1 | 33 hits | IRGM | ||||||||
| 5 | 150877829 | 1 | 1 | rs1428555 | C | T | 0.48 | 0.15 | 0.44 | 0.09 | 4 altered motifs | 1 hit | 34 hits | IRGM | |||||||
| 5 | 150878054 | 1 | 1 | rs1428554 | A | G | 0.48 | 0.15 | 0.44 | 0.09 | HDAC2,Sox | 1 hit | 34 hits | IRGM | |||||||
| 5 | 150878065 | 1 | 1 | rs1428553 | G | A | 0.48 | 0.15 | 0.44 | 0.09 | 5 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150878545 | 1 | 1 | rs7715981 | A | G | 0.49 | 0.15 | 0.44 | 0.09 | Foxk1,Mef2,Zfp105 | 34 hits | IRGM | ||||||||
| 5 | 150878746 | 1 | 1 | rs7736554 | T | C | 0.49 | 0.15 | 0.44 | 0.09 | 13 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150878920 | 1 | 1 | rs7736873 | T | C | 0.49 | 0.15 | 0.44 | 0.09 | 4 altered motifs | 35 hits | IRGM | ||||||||
| 5 | 150879305 | 1 | 1 | rs11747270 | A | G | 0.49 | 0.15 | 0.44 | 0.09 | HLF,Hsf | 1 hit | 2 hits | 36 hits | IRGM | ||||||
| 5 | 150879358 | 1 | 1 | rs11167518 | C | A | 0.49 | 0.15 | 0.44 | 0.09 | 9 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150880080 | 1 | 1 | rs10041072 | T | C | 0.49 | 0.15 | 0.44 | 0.09 | Foxa,STAT,TCF12 | 35 hits | IRGM | ||||||||
| 5 | 150881001 | 1 | 1 | rs6888206 | C | T | 0.49 | 0.15 | 0.43 | 0.09 | 4 altered motifs | 31 hits | IRGM | ||||||||
| 5 | 150881343 | 1 | 1 | rs10463310 | G | A | 0.49 | 0.15 | 0.44 | 0.09 | Pou2f2 | 35 hits | IRGM | ||||||||
| 5 | 150881745 | 1 | 1 | rs73284126 | G | A | 0.49 | 0.15 | 0.44 | 0.09 | 6 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150881802 | 1 | 1 | rs61530785 | A | G | 0.22 | 0.13 | 0.41 | 0.09 | Mef2 | 41 hits | IRGM | ||||||||
| 5 | 150881874 | 1 | 1 | rs7732643 | A | T | 0.50 | 0.15 | 0.44 | 0.09 | AFP1,Sox | 35 hits | IRGM | ||||||||
| 5 | 150882039 | 1 | 1 | rs7732945 | A | G | 0.49 | 0.15 | 0.44 | 0.09 | 4 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150882580 | 1 | 1 | rs1820682 | T | C | 0.49 | 0.15 | 0.44 | 0.09 | 5 altered motifs | 35 hits | IRGM | ||||||||
| 5 | 150883012 | 1 | 1 | rs2344181 | T | G | 0.50 | 0.15 | 0.44 | 0.09 | 8 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150883024 | 1 | 1 | rs4560537 | G | A | 0.49 | 0.15 | 0.44 | 0.09 | GATA,Pax-4,YY1 | 34 hits | IRGM | ||||||||
| 5 | 150884852 | 1 | 1 | rs3900064 | C | G | 0.42 | 0.15 | 0.44 | 0.09 | 35 hits | IRGM | |||||||||
| 5 | 150885060 | 1 | 1 | rs11746108 | C | A | 0.49 | 0.15 | 0.44 | 0.09 | Irf,Nkx2 | 34 hits | IRGM | ||||||||
| 5 | 150885100 | 1 | 1 | rs11739619 | A | T | 0.49 | 0.15 | 0.44 | 0.09 | TBX5,YY1 | 34 hits | IRGM | ||||||||
| 5 | 150885191 | 1 | 1 | rs114244137 | C | A | 0.49 | 0.15 | 0.44 | 0.09 | HNF6,Sox,Tgif1 | IRGM | |||||||||
| 5 | 150885845 | 1 | 1 | rs11167519 | C | T | 0.49 | 0.15 | 0.44 | 0.09 | 35 hits | IRGM | |||||||||
| 5 | 150886077 | 1 | 1 | rs11167520 | T | C | 0.49 | 0.15 | 0.44 | 0.09 | Maf | 35 hits | IRGM | ||||||||
| 5 | 150886389 | 1 | 1 | rs115823027 | G | A | 0.49 | 0.15 | 0.44 | 0.09 | PLZF,Pou5f1 | IRGM | |||||||||
| 5 | 150886524 | 1 | 1 | rs73284141 | A | G | 0.49 | 0.15 | 0.44 | 0.09 | 34 hits | IRGM | |||||||||
| 5 | 150886830 | 1 | 1 | rs3906527 | T | A | 0.49 | 0.15 | 0.44 | 0.09 | 10 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150886956 | 1 | 1 | rs2345001 | G | T | 0.49 | 0.15 | 0.44 | 0.09 | 5 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150887156 | 1 | 1 | rs3906528 | G | A | 0.49 | 0.15 | 0.44 | 0.09 | Foxo,GR,Nrf-2 | 34 hits | IRGM | ||||||||
| 5 | 150887795 | 1 | 1 | rs2344180 | T | A | 0.50 | 0.15 | 0.44 | 0.09 | 7 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150887814 | 1 | 1 | rs2880791 | C | A | 0.49 | 0.15 | 0.44 | 0.09 | CCNT2,GATA | 34 hits | IRGM | ||||||||
| 5 | 150888005 | 1 | 1 | rs10064334 | C | A | 0.49 | 0.15 | 0.44 | 0.09 | 5 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150888589 | 1 | 1 | rs4579248 | C | T | 0.10 | 0.12 | 0.41 | 0.09 | 7 altered motifs | 43 hits | IRGM | ||||||||
| 5 | 150888646 | 1 | 1 | rs34716763 | CTG | C | 0.49 | 0.15 | 0.44 | 0.09 | Gfi1,Pou2f2 | 33 hits | IRGM | ||||||||
| 5 | 150889047 | 1 | 1 | rs3857422 | A | G | 0.49 | 0.15 | 0.44 | 0.09 | 9 altered motifs | 35 hits | IRGM | ||||||||
| 5 | 150889770 | 1 | 1 | rs4352593 | T | A,C,G | 0.49 | 0.15 | 0.44 | 0.09 | 34 hits | IRGM | |||||||||
| 5 | 150889879 | 1 | 1 | rs7709464 | C | A | 0.49 | 0.15 | 0.44 | 0.09 | SIX5 | 35 hits | IRGM | ||||||||
| 5 | 150890489 | 1 | 1 | rs10053750 | A | G | 0.49 | 0.15 | 0.44 | 0.09 | 6 altered motifs | 35 hits | IRGM | ||||||||
| 5 | 150890730 | 1 | 1 | rs7714415 | A | G | 0.51 | 0.15 | 0.44 | 0.09 | 5 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150890858 | 1 | 1 | rs7714584 | A | G | 0.49 | 0.15 | 0.44 | 0.09 | 5 altered motifs | 1 hit | 1 hit | 35 hits | IRGM | ||||||
| 5 | 150891522 | 1 | 1 | rs6579806 | C | T | 0.49 | 0.15 | 0.44 | 0.09 | 8 altered motifs | 35 hits | IRGM | ||||||||
| 5 | 150891560 | 1 | 1 | rs4958848 | G | C | 0.49 | 0.15 | 0.44 | 0.09 | 9 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150892191 | 1 | 1 | rs1863998 | A | T | 0.50 | 0.15 | 0.44 | 0.09 | 4 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150892223 | 1 | 1 | rs11167521 | A | G | 0.49 | 0.15 | 0.44 | 0.09 | 7 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150892305 | 1 | 1 | rs35564298 | AT | A | 0.49 | 0.15 | 0.44 | 0.09 | 11 altered motifs | IRGM | |||||||||
| 5 | 150892500 | 1 | 1 | rs10057988 | A | G | 0.49 | 0.15 | 0.44 | 0.09 | 4 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150892655 | 1 | 1 | rs10052606 | T | G | 0.49 | 0.15 | 0.44 | 0.09 | 6 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150892890 | 1 | 1 | rs57001853 | A | G | 0.49 | 0.15 | 0.44 | 0.09 | ATF3,NF-E2,Pitx3 | 34 hits | IRGM | ||||||||
| 5 | 150893059 | 1 | 1 | rs2217266 | C | A | 0.49 | 0.15 | 0.44 | 0.09 | AP-1,HNF1 | 34 hits | IRGM | ||||||||
| 5 | 150893291 | 1 | 1 | rs1816256 | T | C | 0.42 | 0.15 | 0.44 | 0.09 | 6 altered motifs | 35 hits | IRGM | ||||||||
| 5 | 150898784 | 1 | 1 | rs4958426 | A | C | 0.05 | 0.12 | 0.41 | 0.09 | BATF | 45 hits | IRGM | intronic | |||||||
| 5 | 150899656 | 1 | 1 | rs11743488 | A | G | 0.10 | 0.12 | 0.41 | 0.09 | 6 altered motifs | 44 hits | IRGM | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 67234232 | 1 | 1 | rs79755370 | C | A | 0.01 | 0.06 | 0.00 | 0.06 | 29 tissues | 4 bound proteins | IL23R | intronic | |||||||
| 1 | 67240275 | 1 | 1 | rs11209026 | G | A | 0.01 | 0.06 | 0.00 | 0.06 | GR | 15 hits | 3 hits | IL23R | missense | ||||||
| 1 | 67242007 | 1 | 1 | rs11581607 | G | A | 0.01 | 0.06 | 0.00 | 0.06 | 4 altered motifs | IL23R | intronic | ||||||||
| 1 | 67247663 | 1 | 1 | rs113935720 | T | C | 0.01 | 0.06 | 0.00 | 0.06 | 4 altered motifs | IL23R | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 67234232 | 1 | 1 | rs79755370 | C | A | 0.01 | 0.06 | 0.00 | 0.06 | 29 tissues | 4 bound proteins | IL23R | intronic | |||||||
| 1 | 67240275 | 1 | 1 | rs11209026 | G | A | 0.01 | 0.06 | 0.00 | 0.06 | GR | 15 hits | 3 hits | IL23R | missense | ||||||
| 1 | 67242007 | 1 | 1 | rs11581607 | G | A | 0.01 | 0.06 | 0.00 | 0.06 | 4 altered motifs | IL23R | intronic | ||||||||
| 1 | 67247663 | 1 | 1 | rs113935720 | T | C | 0.01 | 0.06 | 0.00 | 0.06 | 4 altered motifs | IL23R | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 132435113 | 1 | 1 | rs2188962 | C | T | 0.05 | 0.29 | 0.00 | 0.38 | LIV | 16 tissues | 6 tissues | HNF4A,HNF4G | 6 altered motifs | 3 hits | 324 hits | 45 hits | C5orf56 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 21 | 44195858 | 1 | 1 | rs7282490 | G | A | 0.79 | 0.43 | 0.42 | 0.60 | BLD | 7 tissues | BLD | 1 hit | 221 hits | 4 hits | 5.4kb 5' of AP001057.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 166978686 | 1 | 1 | rs9457247 | C | T | 0.24 | 0.43 | 0.39 | 0.48 | STRM | 5 tissues | 17 hits | RP1-167A14.2 | |||||||
| 6 | 166978716 | 1 | 1 | rs9459827 | A | T | 0.24 | 0.42 | 0.39 | 0.48 | FAT, VAS, BONE | NRSF | 17 hits | RP1-167A14.2 | |||||||
| 6 | 166979907 | 1 | 1 | rs1794699 | G | C | 0.24 | 0.43 | 0.39 | 0.48 | NF-E2 | 17 hits | RP1-167A14.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 230249416 | 1 | 1 | rs9989899 | G | A | 0.16 | 0.14 | 0.00 | 0.18 | 4 altered motifs | 1 hit | 35 hits | SP140 | intronic | ||||||
| 2 | 230250275 | 1 | 1 | rs34855578 | C | G | 0.15 | 0.14 | 0.00 | 0.18 | 4 altered motifs | 32 hits | SP140 | intronic | |||||||
| 2 | 230250280 | 1 | 1 | rs35857956 | C | T | 0.15 | 0.14 | 0.00 | 0.18 | 32 hits | SP140 | intronic | ||||||||
| 2 | 230250739 | 1 | 1 | rs9989735 | G | C | 0.12 | 0.13 | 0.00 | 0.18 | POL24H8 | 20 altered motifs | 33 hits | SP140 | intronic | ||||||
| 2 | 230250915 | 1 | 1 | rs9989835 | A | T | 0.16 | 0.14 | 0.00 | 0.18 | ZBRK1 | 35 hits | SP140 | intronic | |||||||
| 2 | 230251261 | 1 | 1 | rs13385151 | C | T | 0.12 | 0.13 | 0.00 | 0.18 | Sp100 | 36 hits | SP140 | intronic | |||||||
| 2 | 230251702 | 1 | 1 | rs10498246 | T | A | 0.16 | 0.14 | 0.00 | 0.18 | Hoxa13,RXRA | 35 hits | SP140 | intronic | |||||||
| 2 | 230252159 | 1 | 1 | rs7423615 | C | T | 0.12 | 0.13 | 0.00 | 0.18 | BLD | GATA | 1 hit | 35 hits | SP140 | intronic | |||||
| 2 | 230255199 | 1 | 1 | rs28693552 | G | C | 0.13 | 0.14 | 0.00 | 0.18 | BLD | BLD, THYM | 21 altered motifs | 33 hits | SP140 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 40437846 | 1 | 1 | rs9292777 | C | T | 0.67 | 0.51 | 0.15 | 0.58 | 14 tissues | 25 tissues | 6 bound proteins | 3 hits | 1 hit | 1 hit | 117kb 3' of AC108105.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 8 | 128541451 | 1 | 1 | rs10103637 | C | A | 0.32 | 0.16 | 0.03 | 0.10 | BLD | NF-kappaB,PU.1,STAT | RP11-89M16.1 | ||||||||
| 8 | 128541457 | 1 | 1 | rs10103640 | C | T | 0.32 | 0.16 | 0.03 | 0.10 | BLD | 22 altered motifs | RP11-89M16.1 | ||||||||
| 8 | 128543197 | 1 | 1 | rs938651 | A | C | 0.32 | 0.16 | 0.03 | 0.10 | BLD | 7 tissues | MUS | RP11-89M16.1 | |||||||
| 8 | 128543286 | 1 | 1 | rs2011527 | T | C | 0.32 | 0.16 | 0.03 | 0.10 | BLD | 7 tissues | 4 tissues | 12 altered motifs | RP11-89M16.1 | ||||||
| 8 | 128543917 | 1 | 1 | rs6470637 | A | G | 0.32 | 0.16 | 0.03 | 0.10 | BLD | 6 tissues | 4 altered motifs | 2 hits | RP11-89M16.1 | ||||||
| 8 | 128544110 | 1 | 1 | rs16903097 | T | G | 0.30 | 0.15 | 0.02 | 0.10 | BLD | 7 tissues | BLD,THYM,PANC | BCL,NRSF,Sin3Ak-20 | RP11-89M16.1 | ||||||
| 8 | 128545277 | 1 | 1 | rs6982966 | G | A | 0.35 | 0.17 | 0.03 | 0.10 | BLD | 4 altered motifs | RP11-89M16.1 | ||||||||
| 8 | 128545346 | 1 | 1 | rs6982716 | A | G | 0.36 | 0.17 | 0.03 | 0.10 | BLD | RP11-89M16.1 | |||||||||
| 8 | 128545706 | 1 | 1 | rs73374987 | C | T | 0.27 | 0.15 | 0.03 | 0.10 | BLD | 4 altered motifs | RP11-89M16.1 | ||||||||
| 8 | 128547065 | 1 | 1 | rs10098765 | A | G | 0.29 | 0.15 | 0.01 | 0.10 | Nrf1,TATA,TCF4 | RP11-89M16.1 | |||||||||
| 8 | 128548482 | 1 | 1 | rs10678821 | T | TTTTC | 0.29 | 0.15 | 0.02 | 0.10 | 7 altered motifs | RP11-89M16.1 | |||||||||
| 8 | 128548970 | 1 | 1 | rs77247401 | C | CTG | 0.29 | 0.16 | 0.03 | 0.10 | GR,Nkx2 | RP11-89M16.1 | |||||||||
| 8 | 128549077 | 1 | 1 | rs73374998 | T | A | 0.36 | 0.17 | 0.03 | 0.10 | PLCNT,LNG | RP11-89M16.1 | |||||||||
| 8 | 128549620 | 1 | 1 | rs73375000 | C | T | 0.29 | 0.15 | 0.03 | 0.10 | Eomes,Spz1 | RP11-89M16.1 | |||||||||
| 8 | 128550184 | 1 | 1 | rs10089868 | A | C | 0.29 | 0.15 | 0.01 | 0.10 | 4 altered motifs | RP11-89M16.1 | |||||||||
| 8 | 128550212 | 1 | 1 | rs10089972 | C | T | 0.29 | 0.15 | 0.01 | 0.10 | GR,Sin3Ak-20,YY1 | RP11-89M16.1 | |||||||||
| 8 | 128552698 | 1 | 1 | rs73376904 | A | T | 0.29 | 0.16 | 0.03 | 0.10 | BLD, GI, LIV | GI | 5 altered motifs | RP11-89M16.1 | |||||||
| 8 | 128554935 | 1 | 1 | rs6651252 | T | C | 0.33 | 0.17 | 0.03 | 0.10 | BLD, PANC, LNG | 10 tissues | 21 tissues | 12 bound proteins | SP1,TCF4 | 2 hits | 135 hits | RP11-89M16.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 80491075 | 1 | 1 | rs7097656 | T | C | 0.97 | 0.88 | 0.99 | 0.81 | 14 tissues | BLD | 4 altered motifs | 240 hits | 9 hits | TSPAN14 | intronic | ||||
| 10 | 80491788 | 1 | 1 | rs7922621 | C | A | 0.95 | 0.88 | 0.99 | 0.81 | BLD, LIV | 19 tissues | 13 tissues | 11 bound proteins | CEBPB,Pax-5 | 8 hits | TSPAN14 | intronic | |||
| 10 | 80492013 | 1 | 1 | rs7910643 | G | A | 0.96 | 0.88 | 0.99 | 0.81 | BLD, LIV | 18 tissues | 7 tissues | POL2,TCF4 | ZBTB33 | 6 hits | TSPAN14 | intronic | |||
| 10 | 80493945 | 1 | 1 | rs7900536 | C | A | 0.95 | 0.88 | 0.99 | 0.81 | BLD, THYM | 19 tissues | 28 tissues | BAF155,Maf | 2 hits | 9 hits | TSPAN14 | intronic | |||
| 10 | 80494228 | 1 | 1 | rs6586028 | C | T | 0.98 | 0.89 | 0.99 | 0.81 | BLD | 20 tissues | BLD,SKIN | Rad21,ZEB1 | 6 hits | TSPAN14 | intronic | ||||
| 10 | 80497814 | 1 | 1 | rs7896832 | T | C | 0.95 | 0.88 | 0.99 | 0.81 | 4 tissues | 23 tissues | 30 tissues | 19 bound proteins | 8 hits | TSPAN14 | intronic | ||||
| 10 | 80505515 | 1 | 1 | rs9633740 | A | G | 0.96 | 0.88 | 0.99 | 0.81 | GI, LNG, LIV | 23 tissues | 33 tissues | CTCF,ZNF263 | Zfx | 8 hits | TSPAN14 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 14 | 87998543 | 1 | 1 | rs10220572 | C | G | 0.41 | 0.17 | 0.19 | 0.09 | GI,BLD,BLD | HNF4,Hdx | 1 hit | 2.1kb 5' of U6 | |||||||
| 14 | 88000797 | 1 | 1 | rs8006352 | G | T | 0.41 | 0.17 | 0.19 | 0.09 | BLD | 6 altered motifs | 1 hit | 4.3kb 5' of GPR65 | |||||||
| 14 | 88001228 | 1 | 1 | rs8007233 | G | A | 0.41 | 0.17 | 0.19 | 0.09 | BLD | DMRT1 | 1 hit | 3.9kb 5' of GPR65 | |||||||
| 14 | 88004037 | 1 | 1 | rs73312867 | A | C | 0.18 | 0.12 | 0.19 | 0.09 | BLD | BLD | BLD | 9 altered motifs | 1.1kb 5' of GPR65 | ||||||
| 14 | 88004797 | 1 | 1 | rs28667727 | T | C | 0.41 | 0.17 | 0.19 | 0.09 | BLD, GI | BLD, THYM | BLD,BLD | 5 altered motifs | 1 hit | 326bp 5' of GPR65 | |||||
| 14 | 88006251 | 1 | 1 | rs8005161 | C | T | 0.41 | 0.17 | 0.19 | 0.09 | 6 tissues | BLD, GI | 9 tissues | 4 bound proteins | 2 hits | 119 hits | 3 hits | GPR65 | intronic | ||
| 14 | 88009435 | 1 | 1 | rs72160890 | 12-mer | T | 0.41 | 0.17 | 0.19 | 0.09 | BLD | BLD, THYM | BLD | LUN-1,Pou3f1 | 1 hit | GPR65 | intronic | ||||
| 14 | 88011538 | 1 | 1 | rs3742704 | A | C | 0.18 | 0.13 | 0.19 | 0.09 | BLD | 4 tissues | Pax-4 | 1 hit | 2 hits | RP11-300J18.2 | missense | ||||
| 14 | 88012483 | 1 | 1 | rs12434101 | T | C | 0.20 | 0.13 | 0.19 | 0.09 | BLD | LNG | RP11-300J18.2 | 3'-UTR | |||||||
| 14 | 88022477 | 1 | 1 | rs11624293 | T | C | 0.20 | 0.13 | 0.19 | 0.09 | HRT, LIV | PRDM1,Zbtb3 | 2 hits | RP11-300J18.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 17 | 34266646 | 1 | 1 | rs3091315 | A | G | 0.41 | 0.47 | 0.62 | 0.32 | FAT, BLD | 5 altered motifs | 1 hit | 363 hits | 3.6kb 5' of CCL7 | ||||||
| 17 | 34266955 | 1 | 1 | rs3091316 | G | A | 0.26 | 0.46 | 0.62 | 0.32 | BLD | Gmeb1,Mef2,Pou2f2 | 2 hits | 3.3kb 5' of CCL7 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 113834946 | 1 | 1 | rs2476601 | A | G | 1.00 | 0.96 | 1.00 | 0.90 | BRST, BLD, SKIN | 4 tissues | STAT3 | Ets,NERF1a,PU.1 | 14 hits | 3 hits | 1 hit | PTPN22 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 18 | 12774895 | 1 | -1 | rs888270 | G | A | 0.01 | 0.11 | 0.16 | 0.15 | BLD, THYM | BLD | Dobox4 | 10 hits | RP11-973H7.1 | ||||||
| 18 | 12775592 | 1 | 1 | rs2847260 | C | T | 0.80 | 0.86 | 0.84 | 0.85 | 4 tissues | BLD,THYM | 8 altered motifs | 10 hits | RP11-973H7.1 | ||||||
| 18 | 12775852 | 1 | 1 | rs2542147 | G | T | 0.80 | 0.86 | 0.84 | 0.85 | 5 tissues | 5 tissues | SIX5,p300 | 10 hits | RP11-973H7.1 | ||||||
| 18 | 12777574 | 1 | 1 | rs2542148 | C | G | 0.82 | 0.86 | 0.84 | 0.85 | 14 tissues | LNG | 4 tissues | 11 hits | 1.7kb 5' of RP11-973H7.1 | ||||||
| 18 | 12778716 | 1 | 1 | rs2847278 | C | T | 0.83 | 0.87 | 0.84 | 0.85 | 8 altered motifs | 12 hits | 2.8kb 5' of RP11-973H7.1 | ||||||||
| 18 | 12779019 | 1 | 1 | rs2542149 | G | A | 0.83 | 0.87 | 0.84 | 0.85 | IPSC | CTCF,RAD21 | Zfx | 12 hits | 3.1kb 5' of RP11-973H7.1 | ||||||
| 18 | 12779343 | 1 | 1 | rs2847280 | A | G | 0.83 | 0.87 | 0.84 | 0.85 | IPSC | ESDR,IPSC | 5 altered motifs | 12 hits | 3.4kb 5' of RP11-973H7.1 | ||||||
| 18 | 12779764 | 1 | 1 | rs2542150 | G | C | 0.83 | 0.87 | 0.84 | 0.85 | IPSC | IPSC | AP-1,NRSF,Pax-8 | 12 hits | 3.8kb 5' of RP11-973H7.1 | ||||||
| 18 | 12779948 | 1 | 1 | rs2542151 | G | T | 0.83 | 0.87 | 0.84 | 0.85 | Egr-1,Ets,GR | 6 hits | 12 hits | 4kb 5' of RP11-973H7.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 21 | 33404389 | 1 | 1 | rs2284553 | A | G | 0.94 | 0.66 | 0.61 | 0.61 | 24 tissues | 40 tissues | POL2,POL24H8 | 1 hit | 222 hits | 13 hits | IFNGR2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 3 | 49684099 | 1 | 1 | rs3197999 | G | A | 0.24 | 0.22 | 0.06 | 0.31 | 5 tissues | OVRY | SMC3,TCF12,ZBRK1 | 6 hits | 467 hits | 59 hits | MST1 | missense |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 50722863 | 1 | 1 | rs5743289 | C | T | 0.02 | 0.10 | 0.00 | 0.16 | BLD, LIV | Nkx2 | 3 hits | 505 hits | 3 hits | NOD2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 20 | 63717555 | 1 | 1 | rs6062504 | A | G | 0.74 | 0.73 | 0.36 | 0.70 | IPSC, BLD | Zbtb3 | 1 hit | 4 hits | ZGPAT | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 58153390 | 1 | 1 | rs1819658 | C | T | 0.47 | 0.23 | 0.44 | 0.20 | 4 tissues | PLCNT,BLD | AP-2,SIX5 | 1 hit | 2 hits | 15 hits | 38kb 3' of IPMK |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 17 | 27516617 | 1 | 1 | rs2945412 | G | A | 0.81 | 0.65 | 0.31 | 0.59 | 5 tissues | Foxp1,TCF4 | 1 hit | 269 hits | 9 hits | KSR1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 17 | 42375526 | 1 | 1 | rs12942547 | A | G | 0.42 | 0.29 | 0.38 | 0.42 | BLD | BRST, BLD, BRN | 8 altered motifs | 1 hit | 340 hits | 1 hit | STAT3 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 17 | 39756124 | 1 | 1 | rs12946510 | C | T | 0.17 | 0.36 | 0.35 | 0.47 | 4 tissues | 11 tissues | 13 tissues | 13 bound proteins | 7 altered motifs | 1 hit | 238 hits | 33 hits | 1.6kb 3' of RP11-94L15.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 8 | 128541451 | 1 | 1 | rs10103637 | C | A | 0.32 | 0.16 | 0.03 | 0.10 | BLD | NF-kappaB,PU.1,STAT | RP11-89M16.1 | ||||||||
| 8 | 128541457 | 1 | 1 | rs10103640 | C | T | 0.32 | 0.16 | 0.03 | 0.10 | BLD | 22 altered motifs | RP11-89M16.1 | ||||||||
| 8 | 128543197 | 1 | 1 | rs938651 | A | C | 0.32 | 0.16 | 0.03 | 0.10 | BLD | 7 tissues | MUS | RP11-89M16.1 | |||||||
| 8 | 128543286 | 1 | 1 | rs2011527 | T | C | 0.32 | 0.16 | 0.03 | 0.10 | BLD | 7 tissues | 4 tissues | 12 altered motifs | RP11-89M16.1 | ||||||
| 8 | 128543917 | 1 | 1 | rs6470637 | A | G | 0.32 | 0.16 | 0.03 | 0.10 | BLD | 6 tissues | 4 altered motifs | 2 hits | RP11-89M16.1 | ||||||
| 8 | 128544110 | 1 | 1 | rs16903097 | T | G | 0.30 | 0.15 | 0.02 | 0.10 | BLD | 7 tissues | BLD,THYM,PANC | BCL,NRSF,Sin3Ak-20 | RP11-89M16.1 | ||||||
| 8 | 128545277 | 1 | 1 | rs6982966 | G | A | 0.35 | 0.17 | 0.03 | 0.10 | BLD | 4 altered motifs | RP11-89M16.1 | ||||||||
| 8 | 128545346 | 1 | 1 | rs6982716 | A | G | 0.36 | 0.17 | 0.03 | 0.10 | BLD | RP11-89M16.1 | |||||||||
| 8 | 128545706 | 1 | 1 | rs73374987 | C | T | 0.27 | 0.15 | 0.03 | 0.10 | BLD | 4 altered motifs | RP11-89M16.1 | ||||||||
| 8 | 128547065 | 1 | 1 | rs10098765 | A | G | 0.29 | 0.15 | 0.01 | 0.10 | Nrf1,TATA,TCF4 | RP11-89M16.1 | |||||||||
| 8 | 128548482 | 1 | 1 | rs10678821 | T | TTTTC | 0.29 | 0.15 | 0.02 | 0.10 | 7 altered motifs | RP11-89M16.1 | |||||||||
| 8 | 128548970 | 1 | 1 | rs77247401 | C | CTG | 0.29 | 0.16 | 0.03 | 0.10 | GR,Nkx2 | RP11-89M16.1 | |||||||||
| 8 | 128549077 | 1 | 1 | rs73374998 | T | A | 0.36 | 0.17 | 0.03 | 0.10 | PLCNT,LNG | RP11-89M16.1 | |||||||||
| 8 | 128549620 | 1 | 1 | rs73375000 | C | T | 0.29 | 0.15 | 0.03 | 0.10 | Eomes,Spz1 | RP11-89M16.1 | |||||||||
| 8 | 128550184 | 1 | 1 | rs10089868 | A | C | 0.29 | 0.15 | 0.01 | 0.10 | 4 altered motifs | RP11-89M16.1 | |||||||||
| 8 | 128550212 | 1 | 1 | rs10089972 | C | T | 0.29 | 0.15 | 0.01 | 0.10 | GR,Sin3Ak-20,YY1 | RP11-89M16.1 | |||||||||
| 8 | 128552698 | 1 | 1 | rs73376904 | A | T | 0.29 | 0.16 | 0.03 | 0.10 | BLD, GI, LIV | GI | 5 altered motifs | RP11-89M16.1 | |||||||
| 8 | 128554935 | 1 | 1 | rs6651252 | T | C | 0.33 | 0.17 | 0.03 | 0.10 | BLD, PANC, LNG | 10 tissues | 21 tissues | 12 bound proteins | SP1,TCF4 | 2 hits | 135 hits | RP11-89M16.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 230232414 | 1 | 1 | rs6716753 | T | C | 0.20 | 0.15 | 0.00 | 0.19 | BLD, BRN | CEBPB | 1 hit | 105 hits | 35 hits | AC009950.1 | intronic | ||||
| 2 | 230233325 | 1 | 1 | rs6436922 | A | G | 0.21 | 0.17 | 0.00 | 0.19 | BLD | PLZF,Pax-4,TATA | 35 hits | AC009950.1 | intronic | ||||||
| 2 | 230233763 | 1 | 1 | rs1946410 | C | T | 0.20 | 0.15 | 0.00 | 0.19 | BLD | PLZF,TATA | 32 hits | AC009950.1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 28391927 | 1 | 1 | rs925255 | C | T | 0.23 | 0.32 | 0.23 | 0.46 | 23 tissues | 43 tissues | 6 bound proteins | Hoxb13,Hoxd10,OTX | 1 hit | 538 hits | 2 hits | AC104695.3 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 40236053 | 1 | 1 | rs17822785 | A | G | 0.08 | 0.26 | 0.04 | 0.26 | STRM, SKIN | CEBPA,CEBPB,STAT | 25kb 5' of LINC00604 | ||||||||
| 5 | 40236300 | 1 | 1 | rs4957259 | C | T | 0.15 | 0.27 | 0.04 | 0.26 | STRM | LNG | AFP1,Foxj2,Mef2 | 24kb 5' of LINC00604 | |||||||
| 5 | 40236546 | 1 | 1 | rs1842077 | G | A | 0.15 | 0.27 | 0.04 | 0.26 | Bcl6b,Nkx3,STAT | 24kb 5' of LINC00604 | |||||||||
| 5 | 40236916 | 1 | 1 | rs1842076 | T | C | 0.15 | 0.27 | 0.04 | 0.26 | 5 altered motifs | 24kb 5' of LINC00604 | |||||||||
| 5 | 40238755 | 1 | 1 | rs1981843 | A | C | 0.07 | 0.25 | 0.04 | 0.26 | 4 altered motifs | 22kb 5' of LINC00604 | |||||||||
| 5 | 40239130 | 1 | 1 | rs148124370 | C | CAGAT | 0.14 | 0.27 | 0.04 | 0.26 | 10 altered motifs | 22kb 5' of LINC00604 | |||||||||
| 5 | 40239570 | 1 | 1 | rs17822905 | A | C | 0.11 | 0.26 | 0.04 | 0.26 | 8 altered motifs | 21kb 5' of LINC00604 | |||||||||
| 5 | 40241245 | 1 | 1 | rs72748435 | G | T | 0.11 | 0.25 | 0.04 | 0.26 | MAFK | CEBPG,CIZ,FAC1 | 19kb 5' of LINC00604 | ||||||||
| 5 | 40241455 | 1 | 1 | rs4594900 | C | T | 0.13 | 0.26 | 0.04 | 0.26 | Pbx3 | 19kb 5' of LINC00604 | |||||||||
| 5 | 40242672 | 1 | 1 | rs1544775 | G | A | 0.11 | 0.26 | 0.04 | 0.26 | VAS | CFOS,GATA2 | 18kb 5' of LINC00604 | ||||||||
| 5 | 40242681 | 1 | 1 | rs1544776 | C | G | 0.11 | 0.26 | 0.04 | 0.26 | VAS | CFOS,GATA2 | En-1 | 18kb 5' of LINC00604 | |||||||
| 5 | 40243162 | 1 | 1 | rs17823013 | A | G | 0.08 | 0.25 | 0.04 | 0.26 | Foxo,Pax-4,RXRA | 17kb 5' of LINC00604 | |||||||||
| 5 | 40243325 | 1 | 1 | rs138526127 | TC | T | 0.06 | 0.25 | 0.04 | 0.26 | Ets,Sox | 17kb 5' of LINC00604 | |||||||||
| 5 | 40243522 | 1 | 1 | rs17823049 | T | G | 0.11 | 0.26 | 0.04 | 0.26 | ERalpha-a,FXR,RORalpha1 | 17kb 5' of LINC00604 | |||||||||
| 5 | 40243993 | 1 | 1 | rs12517667 | G | A | 0.07 | 0.25 | 0.04 | 0.26 | NRSF,Pax-4 | 17kb 5' of LINC00604 | |||||||||
| 5 | 40244428 | 1 | 1 | rs4957124 | T | A | 0.11 | 0.26 | 0.04 | 0.26 | Pbx-1,Pou3f2 | 16kb 5' of LINC00604 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 159069404 | 1 | 1 | rs212388 | C | T | 0.32 | 0.45 | 0.37 | 0.58 | ESC, IPSC, BLD | IPSC, BLD, THYM | 5 tissues | MAX | Ik-1,MZF1::1-4,STAT | 3 hits | 379 hits | 1 hit | 4.1kb 5' of RP1-111C20.3 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 21 | 33404389 | 1 | 1 | rs2284553 | A | G | 0.94 | 0.66 | 0.61 | 0.61 | 24 tissues | 40 tissues | POL2,POL24H8 | 1 hit | 222 hits | 13 hits | IFNGR2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 38867630 | 1 | 1 | rs395157 | C | T | 0.40 | 0.46 | 0.24 | 0.52 | 8 tissues | 4 tissues | Evi-1,Gfi1,NF-AT | 2 hits | OSMR | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 99531715 | 1 | 1 | rs10883370 | T | C | 0.60 | 0.59 | 0.54 | 0.51 | 4 tissues | 8 hits | 537bp 5' of RP11-129J12.2 | ||||||||
| 10 | 99531836 | 1 | 1 | rs11190140 | T | C | 0.60 | 0.59 | 0.54 | 0.51 | 4 tissues | 7 tissues | ESDR,BLD,BLD | NF-AT1,Sp100,TATA | 2 hits | 1 hit | 8 hits | 658bp 5' of RP11-129J12.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 150877492 | 1 | 1 | rs9324660 | C | G | 0.47 | 0.15 | 0.44 | 0.09 | Mtf1 | 33 hits | IRGM | ||||||||
| 5 | 150877829 | 1 | 1 | rs1428555 | C | T | 0.48 | 0.15 | 0.44 | 0.09 | 4 altered motifs | 1 hit | 34 hits | IRGM | |||||||
| 5 | 150878054 | 1 | 1 | rs1428554 | A | G | 0.48 | 0.15 | 0.44 | 0.09 | HDAC2,Sox | 1 hit | 34 hits | IRGM | |||||||
| 5 | 150878065 | 1 | 1 | rs1428553 | G | A | 0.48 | 0.15 | 0.44 | 0.09 | 5 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150878545 | 1 | 1 | rs7715981 | A | G | 0.49 | 0.15 | 0.44 | 0.09 | Foxk1,Mef2,Zfp105 | 34 hits | IRGM | ||||||||
| 5 | 150878746 | 1 | 1 | rs7736554 | T | C | 0.49 | 0.15 | 0.44 | 0.09 | 13 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150878920 | 1 | 1 | rs7736873 | T | C | 0.49 | 0.15 | 0.44 | 0.09 | 4 altered motifs | 35 hits | IRGM | ||||||||
| 5 | 150879305 | 1 | 1 | rs11747270 | A | G | 0.49 | 0.15 | 0.44 | 0.09 | HLF,Hsf | 1 hit | 2 hits | 36 hits | IRGM | ||||||
| 5 | 150879358 | 1 | 1 | rs11167518 | C | A | 0.49 | 0.15 | 0.44 | 0.09 | 9 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150880080 | 1 | 1 | rs10041072 | T | C | 0.49 | 0.15 | 0.44 | 0.09 | Foxa,STAT,TCF12 | 35 hits | IRGM | ||||||||
| 5 | 150881001 | 1 | 1 | rs6888206 | C | T | 0.49 | 0.15 | 0.43 | 0.09 | 4 altered motifs | 31 hits | IRGM | ||||||||
| 5 | 150881343 | 1 | 1 | rs10463310 | G | A | 0.49 | 0.15 | 0.44 | 0.09 | Pou2f2 | 35 hits | IRGM | ||||||||
| 5 | 150881745 | 1 | 1 | rs73284126 | G | A | 0.49 | 0.15 | 0.44 | 0.09 | 6 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150881802 | 1 | 1 | rs61530785 | A | G | 0.22 | 0.13 | 0.41 | 0.09 | Mef2 | 41 hits | IRGM | ||||||||
| 5 | 150881874 | 1 | 1 | rs7732643 | A | T | 0.50 | 0.15 | 0.44 | 0.09 | AFP1,Sox | 35 hits | IRGM | ||||||||
| 5 | 150882039 | 1 | 1 | rs7732945 | A | G | 0.49 | 0.15 | 0.44 | 0.09 | 4 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150882580 | 1 | 1 | rs1820682 | T | C | 0.49 | 0.15 | 0.44 | 0.09 | 5 altered motifs | 35 hits | IRGM | ||||||||
| 5 | 150883012 | 1 | 1 | rs2344181 | T | G | 0.50 | 0.15 | 0.44 | 0.09 | 8 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150883024 | 1 | 1 | rs4560537 | G | A | 0.49 | 0.15 | 0.44 | 0.09 | GATA,Pax-4,YY1 | 34 hits | IRGM | ||||||||
| 5 | 150884852 | 1 | 1 | rs3900064 | C | G | 0.42 | 0.15 | 0.44 | 0.09 | 35 hits | IRGM | |||||||||
| 5 | 150885060 | 1 | 1 | rs11746108 | C | A | 0.49 | 0.15 | 0.44 | 0.09 | Irf,Nkx2 | 34 hits | IRGM | ||||||||
| 5 | 150885100 | 1 | 1 | rs11739619 | A | T | 0.49 | 0.15 | 0.44 | 0.09 | TBX5,YY1 | 34 hits | IRGM | ||||||||
| 5 | 150885191 | 1 | 1 | rs114244137 | C | A | 0.49 | 0.15 | 0.44 | 0.09 | HNF6,Sox,Tgif1 | IRGM | |||||||||
| 5 | 150885845 | 1 | 1 | rs11167519 | C | T | 0.49 | 0.15 | 0.44 | 0.09 | 35 hits | IRGM | |||||||||
| 5 | 150886077 | 1 | 1 | rs11167520 | T | C | 0.49 | 0.15 | 0.44 | 0.09 | Maf | 35 hits | IRGM | ||||||||
| 5 | 150886389 | 1 | 1 | rs115823027 | G | A | 0.49 | 0.15 | 0.44 | 0.09 | PLZF,Pou5f1 | IRGM | |||||||||
| 5 | 150886524 | 1 | 1 | rs73284141 | A | G | 0.49 | 0.15 | 0.44 | 0.09 | 34 hits | IRGM | |||||||||
| 5 | 150886830 | 1 | 1 | rs3906527 | T | A | 0.49 | 0.15 | 0.44 | 0.09 | 10 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150886956 | 1 | 1 | rs2345001 | G | T | 0.49 | 0.15 | 0.44 | 0.09 | 5 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150887156 | 1 | 1 | rs3906528 | G | A | 0.49 | 0.15 | 0.44 | 0.09 | Foxo,GR,Nrf-2 | 34 hits | IRGM | ||||||||
| 5 | 150887795 | 1 | 1 | rs2344180 | T | A | 0.50 | 0.15 | 0.44 | 0.09 | 7 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150887814 | 1 | 1 | rs2880791 | C | A | 0.49 | 0.15 | 0.44 | 0.09 | CCNT2,GATA | 34 hits | IRGM | ||||||||
| 5 | 150888005 | 1 | 1 | rs10064334 | C | A | 0.49 | 0.15 | 0.44 | 0.09 | 5 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150888589 | 1 | 1 | rs4579248 | C | T | 0.10 | 0.12 | 0.41 | 0.09 | 7 altered motifs | 43 hits | IRGM | ||||||||
| 5 | 150888646 | 1 | 1 | rs34716763 | CTG | C | 0.49 | 0.15 | 0.44 | 0.09 | Gfi1,Pou2f2 | 33 hits | IRGM | ||||||||
| 5 | 150889047 | 1 | 1 | rs3857422 | A | G | 0.49 | 0.15 | 0.44 | 0.09 | 9 altered motifs | 35 hits | IRGM | ||||||||
| 5 | 150889770 | 1 | 1 | rs4352593 | T | A,C,G | 0.49 | 0.15 | 0.44 | 0.09 | 34 hits | IRGM | |||||||||
| 5 | 150889879 | 1 | 1 | rs7709464 | C | A | 0.49 | 0.15 | 0.44 | 0.09 | SIX5 | 35 hits | IRGM | ||||||||
| 5 | 150890489 | 1 | 1 | rs10053750 | A | G | 0.49 | 0.15 | 0.44 | 0.09 | 6 altered motifs | 35 hits | IRGM | ||||||||
| 5 | 150890730 | 1 | 1 | rs7714415 | A | G | 0.51 | 0.15 | 0.44 | 0.09 | 5 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150890858 | 1 | 1 | rs7714584 | A | G | 0.49 | 0.15 | 0.44 | 0.09 | 5 altered motifs | 1 hit | 1 hit | 35 hits | IRGM | ||||||
| 5 | 150891522 | 1 | 1 | rs6579806 | C | T | 0.49 | 0.15 | 0.44 | 0.09 | 8 altered motifs | 35 hits | IRGM | ||||||||
| 5 | 150891560 | 1 | 1 | rs4958848 | G | C | 0.49 | 0.15 | 0.44 | 0.09 | 9 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150892191 | 1 | 1 | rs1863998 | A | T | 0.50 | 0.15 | 0.44 | 0.09 | 4 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150892223 | 1 | 1 | rs11167521 | A | G | 0.49 | 0.15 | 0.44 | 0.09 | 7 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150892305 | 1 | 1 | rs35564298 | AT | A | 0.49 | 0.15 | 0.44 | 0.09 | 11 altered motifs | IRGM | |||||||||
| 5 | 150892500 | 1 | 1 | rs10057988 | A | G | 0.49 | 0.15 | 0.44 | 0.09 | 4 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150892655 | 1 | 1 | rs10052606 | T | G | 0.49 | 0.15 | 0.44 | 0.09 | 6 altered motifs | 34 hits | IRGM | ||||||||
| 5 | 150892890 | 1 | 1 | rs57001853 | A | G | 0.49 | 0.15 | 0.44 | 0.09 | ATF3,NF-E2,Pitx3 | 34 hits | IRGM | ||||||||
| 5 | 150893059 | 1 | 1 | rs2217266 | C | A | 0.49 | 0.15 | 0.44 | 0.09 | AP-1,HNF1 | 34 hits | IRGM | ||||||||
| 5 | 150893291 | 1 | 1 | rs1816256 | T | C | 0.42 | 0.15 | 0.44 | 0.09 | 6 altered motifs | 35 hits | IRGM | ||||||||
| 5 | 150898784 | 1 | 1 | rs4958426 | A | C | 0.05 | 0.12 | 0.41 | 0.09 | BATF | 45 hits | IRGM | intronic | |||||||
| 5 | 150899656 | 1 | 1 | rs11743488 | A | G | 0.10 | 0.12 | 0.41 | 0.09 | 6 altered motifs | 44 hits | IRGM | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 102426850 | 1 | 1 | rs35711445 | TA | T | 0.90 | 0.57 | 0.58 | 0.79 | BLD | BLD | 4 altered motifs | IL18RAP | intronic | ||||||
| 2 | 102428560 | 1 | 1 | rs11694658 | A | G | 0.88 | 0.57 | 0.58 | 0.79 | BLD | Gmeb1,Hdx,ZBTB33 | 7 hits | 15 hits | IL18RAP | intronic | |||||
| 2 | 102430420 | 1 | 1 | rs2160232 | G | A | 0.89 | 0.57 | 0.58 | 0.79 | BLD | CIZ,YY1 | 7 hits | 15 hits | IL18RAP | intronic | |||||
| 2 | 102431977 | 1 | 1 | rs6713618 | A | T | 0.90 | 0.57 | 0.58 | 0.79 | BLD | 4 altered motifs | 1 hit | 12 hits | IL18RAP | intronic | |||||
| 2 | 102432007 | 1 | 1 | rs6716784 | T | G | 0.90 | 0.57 | 0.58 | 0.79 | BLD | Gfi1,Pou1f1,Sox | 7 hits | 15 hits | IL18RAP | intronic | |||||
| 2 | 102433998 | 1 | 1 | rs6543134 | T | G | 0.90 | 0.57 | 0.58 | 0.79 | BLD | 6 altered motifs | 7 hits | 15 hits | AC007278.2 | intronic | |||||
| 2 | 102434465 | 1 | 1 | rs2110735 | A | G | 0.90 | 0.57 | 0.58 | 0.79 | BLD, MUS | Hic1 | 8 hits | 14 hits | AC007278.2 | intronic | |||||
| 2 | 102435746 | 1 | 1 | rs2110734 | C | T | 0.90 | 0.57 | 0.58 | 0.79 | BLD, GI | 4 altered motifs | 7 hits | 14 hits | IL18RAP | intronic | |||||
| 2 | 102436535 | 1 | 1 | rs6746271 | G | C | 0.89 | 0.57 | 0.58 | 0.79 | BLD | 8 tissues | 19 tissues | 6 bound proteins | Maf | 7 hits | 14 hits | IL18RAP | intronic | ||
| 2 | 102437989 | 1 | 1 | rs2058660 | G | A | 0.89 | 0.57 | 0.58 | 0.79 | BLD | 7 altered motifs | 1 hit | 24 hits | 14 hits | IL18RAP | intronic | ||||
| 2 | 102438343 | 1 | 1 | rs2058658 | T | C | 0.90 | 0.57 | 0.58 | 0.79 | BLD | 4 altered motifs | 7 hits | 14 hits | IL18RAP | intronic | |||||
| 2 | 102439184 | 1 | 1 | rs4851009 | G | A | 0.90 | 0.57 | 0.58 | 0.79 | 7 tissues | 7 hits | 14 hits | IL18RAP | intronic | ||||||
| 2 | 102440627 | 1 | 1 | rs11677107 | C | A | 0.82 | 0.57 | 0.58 | 0.79 | BLD | 4 altered motifs | 1 hit | 12 hits | IL18RAP | intronic | |||||
| 2 | 102441868 | 1 | 1 | rs1558652 | G | A | 0.82 | 0.57 | 0.58 | 0.79 | BLD | 5 altered motifs | 1 hit | 12 hits | IL18RAP | intronic | |||||
| 2 | 102443564 | 1 | 1 | rs1558650 | T | A | 0.90 | 0.57 | 0.58 | 0.79 | 5 tissues | BLD,BLD | CTCF | 7 hits | 14 hits | IL18RAP | intronic | ||||
| 2 | 102443853 | 1 | 1 | rs4851584 | A | G | 0.83 | 0.57 | 0.58 | 0.79 | BLD | DMRT1 | 1 hit | 12 hits | IL18RAP | intronic | |||||
| 2 | 102446420 | 1 | 1 | rs6734736 | C | T | 0.90 | 0.57 | 0.58 | 0.79 | 3 hits | 14 hits | IL18RAP | intronic | |||||||
| 2 | 102446909 | 1 | 1 | rs6708413 | G | A | 0.90 | 0.57 | 0.58 | 0.79 | 6 altered motifs | 238 hits | 14 hits | IL18RAP | intronic | ||||||
| 2 | 102449448 | 1 | 1 | rs6543137 | T | G | 0.89 | 0.57 | 0.58 | 0.79 | 5 tissues | CTCF,SMC3 | 1 hit | 11 hits | IL18RAP | intronic | |||||
| 2 | 102452327 | 1 | 1 | rs7559479 | G | A | 0.89 | 0.57 | 0.58 | 0.79 | GI | 4 altered motifs | 4 hits | 14 hits | IL18RAP | 3'-UTR | |||||
| 2 | 102454108 | 1 | 1 | rs917997 | T | C | 0.89 | 0.57 | 0.58 | 0.79 | BLD, GI | TAL1 | 2 hits | 14 hits | 14 hits | 1.5kb 3' of IL18RAP | |||||
| 2 | 102454528 | 1 | 1 | rs2075185 | A | G | 0.85 | 0.57 | 0.58 | 0.79 | GI | ERalpha-a | 1 hit | 12 hits | 2kb 3' of IL18RAP | ||||||
| 2 | 102457014 | 1 | 1 | rs4851587 | C | T | 0.89 | 0.57 | 0.58 | 0.79 | 10 altered motifs | 1 hit | 11 hits | 4.4kb 3' of IL18RAP | |||||||
| 2 | 102457619 | 1 | 1 | rs6757276 | T | G | 0.89 | 0.57 | 0.58 | 0.79 | 1 hit | 11 hits | 5.1kb 3' of IL18RAP | ||||||||
| 2 | 102458033 | 1 | 1 | rs4070554 | A | G | 0.88 | 0.57 | 0.58 | 0.79 | 7 altered motifs | 3 hits | 14 hits | 5.5kb 3' of IL18RAP | |||||||
| 2 | 102459101 | 1 | 1 | rs6761825 | T | C | 0.88 | 0.57 | 0.58 | 0.79 | 5 altered motifs | 3 hits | 14 hits | 6.5kb 3' of IL18RAP |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 9 | 4967950 | 1 | 1 | rs7850675 | A | C | 0.23 | 0.04 | 0.06 | 0.00 | 5 tissues | Eomes,TBX5 | 146bp 5' of AL158147.1 | ||||||||
| 9 | 4968019 | 1 | 1 | rs10974895 | T | C | 0.10 | 0.04 | 0.06 | 0.00 | IPSC,HRT | 5 altered motifs | 77bp 5' of AL158147.1 | ||||||||
| 9 | 4968331 | 1 | 1 | rs10974896 | T | C | 0.11 | 0.04 | 0.06 | 0.00 | 19 altered motifs | 145bp 3' of AL158147.1 | |||||||||
| 9 | 4968735 | 1 | 1 | rs16922486 | T | C | 0.10 | 0.02 | 0.06 | 0.00 | MUS | DMRT1,DMRT4 | 549bp 3' of AL158147.1 | ||||||||
| 9 | 4974153 | 1 | 1 | rs61473187 | G | A | 0.12 | 0.03 | 0.01 | 0.00 | 4 tissues | 5 tissues | CEBPB | Foxj2,Mef2 | 6kb 3' of AL158147.1 | ||||||
| 9 | 4975326 | 1 | 1 | rs144050958 | G | A | 0.12 | 0.03 | 0.01 | 0.00 | Sp4 | 7.1kb 3' of AL158147.1 | |||||||||
| 9 | 4980809 | 1 | 1 | rs189151190 | C | T | 0.00 | 0.00 | 0.00 | 0.00 | BLD | SKIN | AP-1 | 4.2kb 5' of JAK2 | |||||||
| 9 | 4981600 | 1 | 1 | rs75900472 | AC | A | 0.12 | 0.02 | 0.01 | 0.00 | BLD | MUS | Ik-2,LUN-1,NF-AT | 3.4kb 5' of JAK2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 127945105 | 1 | 1 | rs6939352 | T | G | 0.08 | 0.07 | 0.00 | 0.16 | 1 hit | RP11-73O6.4 | |||||||||
| 6 | 127948978 | 1 | 1 | rs9491890 | G | A | 0.08 | 0.07 | 0.00 | 0.16 | BLD, MUS | GI | Cdx2,Hoxb9 | 1 hit | RP11-73O6.4 | ||||||
| 6 | 127956006 | 1 | 1 | rs9491891 | A | G | 0.07 | 0.07 | 0.00 | 0.16 | BLD | AIRE,YY1 | RP11-73O6.4 | ||||||||
| 6 | 127956130 | 1 | 1 | rs147626184 | C | 10-mer | 0.07 | 0.07 | 0.00 | 0.16 | BLD, ADRL | 4 altered motifs | RP11-73O6.4 | ||||||||
| 6 | 127957088 | 1 | 1 | rs118097399 | C | T | 0.07 | 0.07 | 0.00 | 0.16 | BRN, ADRL | GI,LNG,MUS | Bbx,Hbp1,Maf | RP11-73O6.4 | |||||||
| 6 | 127959213 | 1 | 1 | rs9491892 | T | G | 0.08 | 0.07 | 0.00 | 0.16 | 12 altered motifs | RP11-73O6.4 | |||||||||
| 6 | 127959230 | 1 | 1 | rs9482848 | A | T | 0.08 | 0.07 | 0.00 | 0.16 | 7 altered motifs | RP11-73O6.4 | |||||||||
| 6 | 127959786 | 1 | 1 | rs9491893 | G | A | 0.08 | 0.07 | 0.00 | 0.16 | ESDR | SP2,Zfp691 | RP11-73O6.4 | ||||||||
| 6 | 127965156 | 1 | 1 | rs113297984 | G | A | 0.11 | 0.08 | 0.00 | 0.16 | 4 altered motifs | RP11-73O6.4 | |||||||||
| 6 | 127965241 | 1 | 1 | rs72973797 | G | A | 0.16 | 0.09 | 0.00 | 0.16 | 21 altered motifs | RP11-73O6.4 | |||||||||
| 6 | 127966013 | 1 | 1 | rs72973800 | C | T | 0.10 | 0.07 | 0.00 | 0.16 | 10 altered motifs | RP11-73O6.4 | |||||||||
| 6 | 127966703 | 1 | 1 | rs761332 | G | A | 0.16 | 0.09 | 0.00 | 0.16 | 4 tissues | ESDR,BLD,LNG | E2A,HNF4 | RP11-73O6.4 | |||||||
| 6 | 127967391 | 1 | 1 | rs9482849 | T | C | 0.16 | 0.09 | 0.00 | 0.16 | 4 tissues | SKIN | RP11-73O6.4 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 96895668 | 1 | -1 | rs2549783 | T | C | 0.64 | 0.68 | 0.68 | 0.59 | BLD, HRT | BLD | Myc,NF-kappaB | 105 hits | ERAP2 | intronic | |||||
| 5 | 96898829 | 1 | -1 | rs3849749 | A | T | 0.64 | 0.69 | 0.73 | 0.59 | Smad4 | 105 hits | ERAP2 | intronic | |||||||
| 5 | 96900708 | 1 | -1 | rs251340 | A | G | 0.64 | 0.68 | 0.72 | 0.59 | Pax-5 | 102 hits | ERAP2 | intronic | |||||||
| 5 | 96904223 | 1 | -1 | rs2548530 | T | C | 0.64 | 0.68 | 0.73 | 0.59 | ESDR, FAT, BLD | 5 tissues | 9 altered motifs | 104 hits | ERAP2 | intronic | |||||
| 5 | 96908845 | 1 | -1 | rs2549794 | C | T | 0.64 | 0.68 | 0.73 | 0.59 | LIV, ADRL, MUS | 1 hit | 7 hits | 116 hits | ERAP2 | intronic | |||||
| 5 | 96911730 | 1 | -1 | rs2910793 | G | A | 0.64 | 0.68 | 0.73 | 0.59 | MUS | HNF1,NRSF,TCF12 | 102 hits | ERAP2 | intronic | ||||||
| 5 | 96913944 | 1 | -1 | rs2859491 | T | C | 0.64 | 0.69 | 0.72 | 0.59 | 102 hits | ERAP2 | intronic | ||||||||
| 5 | 96915971 | 1 | 1 | rs2351011 | C | A | 0.36 | 0.32 | 0.28 | 0.41 | Crx,Pitx2,SREBP | 102 hits | ERAP2 | intronic | |||||||
| 5 | 96916375 | 1 | 1 | rs2927609 | G | A | 0.36 | 0.32 | 0.28 | 0.41 | Sox | 105 hits | ERAP2 | intronic | |||||||
| 5 | 96917099 | 1 | 1 | rs1363907 | G | A | 0.36 | 0.31 | 0.28 | 0.41 | Pax-4,Sox | 1 hit | 177 hits | 111 hits | ERAP2 | intronic | |||||
| 5 | 96917294 | 1 | 1 | rs1820148 | A | G | 0.36 | 0.32 | 0.28 | 0.41 | 8 altered motifs | 101 hits | ERAP2 | intronic | |||||||
| 5 | 96917400 | 1 | 1 | rs1363908 | T | C | 0.36 | 0.32 | 0.28 | 0.41 | 7 altered motifs | 102 hits | ERAP2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 8 | 128541451 | 1 | 1 | rs10103637 | C | A | 0.32 | 0.16 | 0.03 | 0.10 | BLD | NF-kappaB,PU.1,STAT | RP11-89M16.1 | ||||||||
| 8 | 128541457 | 1 | 1 | rs10103640 | C | T | 0.32 | 0.16 | 0.03 | 0.10 | BLD | 22 altered motifs | RP11-89M16.1 | ||||||||
| 8 | 128543197 | 1 | 1 | rs938651 | A | C | 0.32 | 0.16 | 0.03 | 0.10 | BLD | 7 tissues | MUS | RP11-89M16.1 | |||||||
| 8 | 128543286 | 1 | 1 | rs2011527 | T | C | 0.32 | 0.16 | 0.03 | 0.10 | BLD | 7 tissues | 4 tissues | 12 altered motifs | RP11-89M16.1 | ||||||
| 8 | 128543917 | 1 | 1 | rs6470637 | A | G | 0.32 | 0.16 | 0.03 | 0.10 | BLD | 6 tissues | 4 altered motifs | 2 hits | RP11-89M16.1 | ||||||
| 8 | 128544110 | 1 | 1 | rs16903097 | T | G | 0.30 | 0.15 | 0.02 | 0.10 | BLD | 7 tissues | BLD,THYM,PANC | BCL,NRSF,Sin3Ak-20 | RP11-89M16.1 | ||||||
| 8 | 128545277 | 1 | 1 | rs6982966 | G | A | 0.35 | 0.17 | 0.03 | 0.10 | BLD | 4 altered motifs | RP11-89M16.1 | ||||||||
| 8 | 128545346 | 1 | 1 | rs6982716 | A | G | 0.36 | 0.17 | 0.03 | 0.10 | BLD | RP11-89M16.1 | |||||||||
| 8 | 128545706 | 1 | 1 | rs73374987 | C | T | 0.27 | 0.15 | 0.03 | 0.10 | BLD | 4 altered motifs | RP11-89M16.1 | ||||||||
| 8 | 128547065 | 1 | 1 | rs10098765 | A | G | 0.29 | 0.15 | 0.01 | 0.10 | Nrf1,TATA,TCF4 | RP11-89M16.1 | |||||||||
| 8 | 128548482 | 1 | 1 | rs10678821 | T | TTTTC | 0.29 | 0.15 | 0.02 | 0.10 | 7 altered motifs | RP11-89M16.1 | |||||||||
| 8 | 128548970 | 1 | 1 | rs77247401 | C | CTG | 0.29 | 0.16 | 0.03 | 0.10 | GR,Nkx2 | RP11-89M16.1 | |||||||||
| 8 | 128549077 | 1 | 1 | rs73374998 | T | A | 0.36 | 0.17 | 0.03 | 0.10 | PLCNT,LNG | RP11-89M16.1 | |||||||||
| 8 | 128549620 | 1 | 1 | rs73375000 | C | T | 0.29 | 0.15 | 0.03 | 0.10 | Eomes,Spz1 | RP11-89M16.1 | |||||||||
| 8 | 128550184 | 1 | 1 | rs10089868 | A | C | 0.29 | 0.15 | 0.01 | 0.10 | 4 altered motifs | RP11-89M16.1 | |||||||||
| 8 | 128550212 | 1 | 1 | rs10089972 | C | T | 0.29 | 0.15 | 0.01 | 0.10 | GR,Sin3Ak-20,YY1 | RP11-89M16.1 | |||||||||
| 8 | 128552698 | 1 | 1 | rs73376904 | A | T | 0.29 | 0.16 | 0.03 | 0.10 | BLD, GI, LIV | GI | 5 altered motifs | RP11-89M16.1 | |||||||
| 8 | 128554935 | 1 | 1 | rs6651252 | T | C | 0.33 | 0.17 | 0.03 | 0.10 | BLD, PANC, LNG | 10 tissues | 21 tissues | 12 bound proteins | SP1,TCF4 | 2 hits | 135 hits | RP11-89M16.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 27412596 | 1 | 1 | rs1728918 | A | G | 0.95 | 0.71 | 0.73 | 0.73 | LIV | LNG | LNG,LIV | HNF4A | PPAR,Pou3f2,XBP-1 | 1 hit | 6 hits | 8 hits | 2.9kb 5' of PPM1G |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 22 | 21565382 | 1 | 1 | rs140488 | A | G | 0.12 | 0.33 | 0.48 | 0.20 | BLD | 8 altered motifs | 22 hits | UBE2L3 | intronic | ||||||
| 22 | 21566114 | 1 | 1 | rs131664 | G | A | 0.12 | 0.34 | 0.48 | 0.20 | BLD | Gfi1,Pitx2 | 22 hits | UBE2L3 | intronic | ||||||
| 22 | 21566614 | 1 | 1 | rs131665 | A | G | 0.12 | 0.33 | 0.48 | 0.20 | BLD | BLD,PANC | 5 altered motifs | 2 hits | 23 hits | UBE2L3 | intronic | ||||
| 22 | 21567005 | 1 | 1 | rs140489 | G | A | 0.48 | 0.37 | 0.48 | 0.20 | 4 tissues | 5 tissues | CEBPB,PU1 | 6 altered motifs | 24 hits | UBE2L3 | intronic | ||||
| 22 | 21567397 | 1 | 1 | rs140490 | G | T | 0.48 | 0.36 | 0.48 | 0.20 | 17 tissues | 6 tissues | WHIP | 7 altered motifs | 24 hits | UBE2L3 | intronic | ||||
| 22 | 21572775 | 1 | 1 | rs140498 | G | A | 0.12 | 0.33 | 0.48 | 0.20 | LNG | 17 tissues | 6 tissues | HDAC2,POL24H8,POL2B | Foxp3,Mef2 | 4 hits | 23 hits | UBE2L3 | intronic | ||
| 22 | 21572942 | 1 | 1 | rs140499 | C | T | 0.12 | 0.33 | 0.48 | 0.20 | LNG | 20 tissues | 4 tissues | POL24H8,POL2B | RXRA | 3 hits | 23 hits | UBE2L3 | intronic | ||
| 22 | 21574352 | 1 | 1 | rs181359 | G | A | 0.12 | 0.33 | 0.48 | 0.20 | 4 tissues | 21 tissues | SKIN,BLD,BLD | POL2B | Pax-4,Pax-6 | 1 hit | 6 hits | 23 hits | UBE2L3 | intronic | |
| 22 | 21574627 | 1 | 1 | rs181360 | T | G | 0.12 | 0.33 | 0.48 | 0.20 | GI, LNG | 19 tissues | 14 tissues | POL24H8 | 7 hits | 23 hits | UBE2L3 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 9 | 136501661 | 1 | 1 | rs11574906 | T | A | 0.03 | 0.09 | 0.00 | 0.10 | SKIN, PANC | BLD | ZBRK1 | 2 hits | 5 hits | NOTCH1 | intronic | ||||
| 9 | 136505189 | 1 | 1 | rs13300218 | G | A | 0.01 | 0.09 | 0.00 | 0.10 | 7 altered motifs | 7 hits | NOTCH1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 50886648 | 1 | 1 | rs8053407 | G | A | 0.19 | 0.11 | 0.08 | 0.14 | 11 altered motifs | RP11-883G14.1 | |||||||||
| 16 | 50887672 | 1 | 1 | rs59140851 | C | A | 0.17 | 0.11 | 0.08 | 0.14 | BLD | IPSC,BLD | BHLHE40 | RP11-883G14.1 | |||||||
| 16 | 50887903 | 1 | 1 | rs16949029 | G | C | 0.17 | 0.11 | 0.08 | 0.14 | Nkx2 | RP11-883G14.1 | |||||||||
| 16 | 50888209 | 1 | 1 | rs1874494 | A | G | 0.17 | 0.11 | 0.06 | 0.14 | NRSF | NRSF,RXRA | 1 hit | RP11-883G14.1 | |||||||
| 16 | 50888875 | 1 | 1 | rs13333062 | G | A | 0.18 | 0.11 | 0.06 | 0.14 | TBX5 | 1 hit | RP11-883G14.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 22 | 21566528 | 1 | 1 | rs59391722 | G | C | 0.04 | 0.31 | 0.40 | 0.19 | BLD | PANC,BLD | ELF1,Ets,Sin3Ak-20 | 20 hits | UBE2L3 | intronic | |||||
| 22 | 21568167 | 1 | 1 | rs11089620 | C | G | 0.04 | 0.32 | 0.39 | 0.19 | 24 tissues | 32 tissues | SMC3,YY1 | 15 altered motifs | 20 hits | UBE2L3 | intronic | ||||
| 22 | 21568615 | 1 | 1 | rs2266959 | G | T | 0.04 | 0.31 | 0.39 | 0.19 | 23 tissues | SPLN | 23 tissues | 4 bound proteins | 4 altered motifs | 1 hit | 530 hits | 21 hits | UBE2L3 | intronic | |
| 22 | 21574308 | 1 | 1 | rs2266961 | C | G | 0.05 | 0.31 | 0.40 | 0.19 | 21 tissues | 5 tissues | POL2B | ERalpha-a | 2 hits | 21 hits | UBE2L3 | intronic | |||
| 22 | 21575804 | 1 | 1 | rs73166619 | C | T | 0.05 | 0.31 | 0.40 | 0.19 | BLD, PLCNT, GI | ESC,BLD | Foxa | 20 hits | UBE2L3 | intronic | |||||
| 22 | 21576488 | 1 | 1 | rs5754166 | C | T | 0.05 | 0.32 | 0.39 | 0.19 | BLD | Mef2 | 20 hits | UBE2L3 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 4 | 102005766 | 1 | 1 | rs34592089 | G | A | 0.00 | 0.03 | 0.00 | 0.06 | BLD | RP11-498M5.2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 9 | 114790605 | 1 | 1 | rs3810936 | T | C | 0.89 | 0.72 | 0.52 | 0.68 | 5 tissues | ESDR,ESDR,MUS | Pou2f2 | 1 hit | 1 hit | 1 hit | TNFSF15 | synonymous |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 19 | 48702851 | 1 | 1 | rs679574 | C | G | 0.49 | 0.38 | 0.01 | 0.43 | SPLN | RREB-1 | 31 hits | FUT2 | intronic | ||||||
| 19 | 48702888 | 1 | 1 | rs516316 | G | C | 0.49 | 0.38 | 0.01 | 0.43 | SPLN | Myc,Nrf1 | 1 hit | 30 hits | FUT2 | intronic | |||||
| 19 | 48702915 | 1 | 1 | rs516246 | C | T | 0.49 | 0.38 | 0.01 | 0.43 | SPLN | 8 altered motifs | 3 hits | 178 hits | 31 hits | FUT2 | intronic | ||||
| 19 | 48703205 | 1 | 1 | rs681343 | C | T | 0.49 | 0.38 | 0.01 | 0.43 | 1 hit | 31 hits | FUT2 | synonymous | |||||||
| 19 | 48703417 | 1 | 1 | rs601338 | G | A | 0.49 | 0.38 | 0.01 | 0.43 | HDAC2,HNF4 | 2 hits | 31 hits | FUT2 | nonsense |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 50729867 | 1 | 1 | rs2066847 | G | GC | 0.01 | 0.01 | 0.00 | 0.01 | 4 altered motifs | 3 hits | NOD2 | frameshift |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 113761186 | 1 | 1 | rs6679677 | C | A | 0.00 | 0.04 | 0.00 | 0.10 | BLD | ESDR, BLD | E2F,Irf,NF-Y | 7 hits | 126 hits | 1 hit | 645bp 3' of RSBN1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 21430496 | 1 | 1 | rs71559680 | CTAG | CCAT | Hmbox1,TATA | 75kb 3' of RP1-135L22.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 172884320 | 1 | 1 | rs7517810 | C | T | 0.23 | 0.49 | 0.89 | 0.24 | 9 tissues | MUS | 1 hit | 146 hits | 1 hit | RP1-15D23.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 17 | 42355962 | 1 | 1 | rs9891119 | A | C | 0.42 | 0.27 | 0.38 | 0.38 | BLD | 11 tissues | BLD | GATA,Mef2,NR4A | 2 hits | 1 hit | 5 hits | STAT3 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 20 | 63718234 | 1 | 1 | rs4809330 | A | G | 0.94 | 0.75 | 0.36 | 0.70 | Pitx3 | 1 hit | 6 hits | 10 hits | ZGPAT | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 8 | 125522429 | 1 | 1 | rs921720 | A | G | 0.13 | 0.53 | 0.41 | 0.63 | 8 tissues | 6 tissues | 2 hits | 260 hits | RP11-136O12.2 | ||||||
| 8 | 125523895 | 1 | 1 | rs10956252 | C | G | 0.13 | 0.53 | 0.41 | 0.63 | HRT | RP11-136O12.2 | |||||||||
| 8 | 125524937 | 1 | 1 | rs55867617 | C | G | 0.13 | 0.53 | 0.41 | 0.63 | 10 tissues | CRVX | CEBPB,JUND | 6 altered motifs | RP11-136O12.2 | ||||||
| 8 | 125525328 | 1 | 1 | rs4871611 | G | A | 0.13 | 0.53 | 0.36 | 0.63 | CRVX | 11 tissues | 11 tissues | 4 bound proteins | GR | 1 hit | RP11-136O12.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 21 | 39093586 | 1 | 1 | rs4817986 | G | T | 0.10 | 0.32 | 0.18 | 0.27 | BLD | 6 tissues | LNG | Nkx6-1,Zfp187 | 1 hit | 3 hits | 64kb 5' of AF064858.10 | ||||
| 21 | 39093608 | 1 | 1 | rs2836878 | G | A | 0.12 | 0.32 | 0.18 | 0.27 | BLD | 6 tissues | BLD,LNG | GR | 4 hits | 1268 hits | 3 hits | 64kb 5' of AF064858.10 | |||
| 21 | 39093975 | 1 | 1 | rs4817987 | C | T | 0.12 | 0.32 | 0.18 | 0.27 | BLD | 7 tissues | Ik-2 | 3 hits | 65kb 5' of AF064858.10 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 127924620 | 1 | 1 | rs13204742 | G | T | 0.02 | 0.06 | 0.00 | 0.14 | 4 tissues | 8 tissues | 4 altered motifs | 1 hit | 141 hits | 1 hit | RP11-73O6.4 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 79300560 | 1 | 1 | rs1250550 | C | A | 0.09 | 0.27 | 0.48 | 0.30 | 10 tissues | MUS,BRN | 3 hits | 2 hits | ZMIZ1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 197642552 | 1 | 1 | rs16841842 | C | A | 0.05 | 0.20 | 0.19 | 0.19 | Maf,Sox | 1 hit | DENND1B | intronic | |||||||
| 1 | 197662011 | 1 | 1 | rs2488389 | G | A | 0.33 | 0.22 | 0.19 | 0.19 | 8 altered motifs | 1 hit | 253 hits | 1 hit | DENND1B | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 96895668 | 1 | -1 | rs2549783 | T | C | 0.64 | 0.68 | 0.68 | 0.59 | BLD, HRT | BLD | Myc,NF-kappaB | 105 hits | ERAP2 | intronic | |||||
| 5 | 96898829 | 1 | -1 | rs3849749 | A | T | 0.64 | 0.69 | 0.73 | 0.59 | Smad4 | 105 hits | ERAP2 | intronic | |||||||
| 5 | 96900708 | 1 | -1 | rs251340 | A | G | 0.64 | 0.68 | 0.72 | 0.59 | Pax-5 | 102 hits | ERAP2 | intronic | |||||||
| 5 | 96904223 | 1 | -1 | rs2548530 | T | C | 0.64 | 0.68 | 0.73 | 0.59 | ESDR, FAT, BLD | 5 tissues | 9 altered motifs | 104 hits | ERAP2 | intronic | |||||
| 5 | 96908845 | 1 | -1 | rs2549794 | C | T | 0.64 | 0.68 | 0.73 | 0.59 | LIV, ADRL, MUS | 1 hit | 7 hits | 116 hits | ERAP2 | intronic | |||||
| 5 | 96911730 | 1 | -1 | rs2910793 | G | A | 0.64 | 0.68 | 0.73 | 0.59 | MUS | HNF1,NRSF,TCF12 | 102 hits | ERAP2 | intronic | ||||||
| 5 | 96913944 | 1 | -1 | rs2859491 | T | C | 0.64 | 0.69 | 0.72 | 0.59 | 102 hits | ERAP2 | intronic | ||||||||
| 5 | 96915971 | 1 | 1 | rs2351011 | C | A | 0.36 | 0.32 | 0.28 | 0.41 | Crx,Pitx2,SREBP | 102 hits | ERAP2 | intronic | |||||||
| 5 | 96916375 | 1 | 1 | rs2927609 | G | A | 0.36 | 0.32 | 0.28 | 0.41 | Sox | 105 hits | ERAP2 | intronic | |||||||
| 5 | 96917099 | 1 | 1 | rs1363907 | G | A | 0.36 | 0.31 | 0.28 | 0.41 | Pax-4,Sox | 1 hit | 177 hits | 111 hits | ERAP2 | intronic | |||||
| 5 | 96917294 | 1 | 1 | rs1820148 | A | G | 0.36 | 0.32 | 0.28 | 0.41 | 8 altered motifs | 101 hits | ERAP2 | intronic | |||||||
| 5 | 96917400 | 1 | 1 | rs1363908 | T | C | 0.36 | 0.32 | 0.28 | 0.41 | 7 altered motifs | 102 hits | ERAP2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 18 | 12808141 | 1 | 1 | rs8096138 | C | G | 0.04 | 0.07 | 0.16 | 0.16 | GR,Osr,TATA | 10 hits | PTPN2 | intronic | |||||||
| 18 | 12808467 | 1 | 1 | rs35153695 | AC | A | 0.04 | 0.07 | 0.16 | 0.16 | 17 altered motifs | 10 hits | PTPN2 | intronic | |||||||
| 18 | 12809341 | 1 | 1 | rs1893217 | A | G | 0.05 | 0.07 | 0.16 | 0.16 | ESC | RXR::LXR,RXRA | 5 hits | 1095 hits | 10 hits | PTPN2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 21 | 33404389 | 1 | 1 | rs2284553 | A | G | 0.94 | 0.66 | 0.61 | 0.61 | 24 tissues | 40 tissues | POL2,POL24H8 | 1 hit | 222 hits | 13 hits | IFNGR2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 17 | 42347515 | 1 | 1 | rs6503695 | T | C | 0.37 | 0.22 | 0.36 | 0.34 | 18 tissues | 16 tissues | 5 bound proteins | 4 hits | STAT3 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 43579779 | 1 | 1 | rs10495903 | C | T | 0.17 | 0.10 | 0.01 | 0.11 | RFX5,SMC3 | 2 hits | 230 hits | 1 hit | THADA | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 17 | 59886176 | 1 | 1 | rs1292053 | A | G | 0.53 | 0.44 | 0.60 | 0.42 | NRSF,Pbx-1,Tgif1 | 1 hit | 380 hits | 5 hits | TUBD1 | missense |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 21 | 44195140 | 1 | 1 | rs2838519 | G | A | 0.70 | 0.42 | 0.41 | 0.60 | 10 tissues | 10 tissues | RREB-1 | 2 hits | 3 hits | 6.1kb 5' of AP001057.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 206766559 | 1 | 1 | rs3024505 | G | A | 0.04 | 0.10 | 0.02 | 0.17 | BLD, BONE | 15 tissues | 34 tissues | 22 bound proteins | MZF1::1-4,Pax-4 | 7 hits | 257 hits | 1kb 3' of IL10 | |||
| 1 | 206769068 | 1 | 1 | rs3024495 | C | T | 0.02 | 0.10 | 0.02 | 0.17 | BLD, GI | 11 tissues | BLD,SKIN | IL10 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 11277902 | 1 | 1 | rs441349 | C | T | 0.01 | 0.08 | 0.05 | 0.17 | LIV | 2 hits | 12 hits | RMI2 | |||||||
| 16 | 11278345 | 1 | 1 | rs396263 | A | G | 0.02 | 0.08 | 0.05 | 0.17 | LIV | 5 altered motifs | 10 hits | RMI2 | |||||||
| 16 | 11278799 | 1 | 1 | rs443299 | G | A | 0.19 | 0.09 | 0.05 | 0.17 | BLD, LIV | LIV | 4 altered motifs | 11 hits | RMI2 | ||||||
| 16 | 11279463 | 1 | 1 | rs529866 | C | T | 0.19 | 0.09 | 0.05 | 0.17 | LIV | 4 tissues | 4 tissues | POL2 | DBP,GR,Pax-2 | 1 hit | 179 hits | 13 hits | RMI2 | ||
| 16 | 11279548 | 1 | 1 | rs423674 | G | T | 0.19 | 0.09 | 0.05 | 0.17 | LIV | BLD, LIV, GI | LNG,LIV | HEY1,POL2 | 2 hits | 13 hits | RMI2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 142114049 | 1 | 1 | rs4912804 | T | C | 0.78 | 0.65 | 0.66 | 0.61 | ESC, BLD, MUS | 9 altered motifs | 4 hits | NDFIP1 | intronic | ||||||
| 5 | 142114120 | 1 | 1 | rs4912805 | A | G | 0.79 | 0.65 | 0.66 | 0.61 | ESC, BLD, MUS | 4 altered motifs | 5 hits | NDFIP1 | intronic | ||||||
| 5 | 142115154 | 1 | 1 | rs13184323 | T | G | 0.79 | 0.65 | 0.66 | 0.61 | 6 tissues | DMRT1,HDAC2 | 5 hits | NDFIP1 | intronic | ||||||
| 5 | 142115574 | 1 | 1 | rs13188700 | T | C | 0.77 | 0.65 | 0.65 | 0.61 | 8 tissues | 12 altered motifs | 5 hits | NDFIP1 | intronic | ||||||
| 5 | 142116150 | 1 | 1 | rs10875596 | T | C | 0.79 | 0.65 | 0.65 | 0.61 | 15 tissues | STAT3,ZNF263 | GATA,Irf | 9 hits | NDFIP1 | intronic | |||||
| 5 | 142116899 | 1 | 1 | rs7712237 | T | C | 0.78 | 0.65 | 0.65 | 0.61 | BLD | 6 tissues | Mef2 | 5 hits | NDFIP1 | intronic | |||||
| 5 | 142118085 | 1 | 1 | rs9324866 | A | G | 0.78 | 0.65 | 0.65 | 0.61 | GI | 11 tissues | LNG | 8 hits | NDFIP1 | intronic | |||||
| 5 | 142119067 | 1 | 1 | rs1036209 | T | A | 0.78 | 0.65 | 0.65 | 0.61 | BLD | Fox,HNF1 | 5 hits | NDFIP1 | intronic | ||||||
| 5 | 142119476 | 1 | 1 | rs1036207 | A | G | 0.78 | 0.65 | 0.65 | 0.61 | BLD | Cdx2 | 5 hits | NDFIP1 | intronic | ||||||
| 5 | 142120871 | 1 | 1 | rs11749731 | A | C | 0.78 | 0.65 | 0.66 | 0.61 | BLD | 12 tissues | BLD | 12 altered motifs | 1 hit | 8 hits | NDFIP1 | intronic | |||
| 5 | 142121139 | 1 | 1 | rs11750521 | T | C | 0.79 | 0.65 | 0.66 | 0.61 | BLD | 7 tissues | 24 altered motifs | 5 hits | NDFIP1 | intronic | |||||
| 5 | 142121943 | 1 | 1 | rs1835966 | C | T | 0.79 | 0.65 | 0.65 | 0.61 | 9 tissues | Zbtb3 | 8 hits | NDFIP1 | intronic | ||||||
| 5 | 142122206 | 1 | 1 | rs1835965 | G | A | 0.79 | 0.65 | 0.65 | 0.61 | 8 tissues | SKIN | Pax-6,ZNF263 | 5 hits | NDFIP1 | intronic | |||||
| 5 | 142122470 | 1 | 1 | rs10463348 | G | T | 0.79 | 0.65 | 0.65 | 0.61 | Cdx,Foxa,SRF | 5 hits | NDFIP1 | intronic | |||||||
| 5 | 142124274 | 1 | 1 | rs6877864 | A | G | 0.79 | 0.65 | 0.65 | 0.61 | 6 tissues | SKIN | GATA1 | 5 altered motifs | 5 hits | NDFIP1 | intronic | ||||
| 5 | 142124305 | 1 | 1 | rs6882226 | T | A | 0.79 | 0.65 | 0.65 | 0.61 | 6 tissues | SKIN | GATA1 | 7 altered motifs | 5 hits | NDFIP1 | intronic | ||||
| 5 | 142125426 | 1 | 1 | rs6883827 | A | G | 0.79 | 0.65 | 0.66 | 0.61 | BLD | Evi-1,Rad21 | 5 hits | NDFIP1 | intronic | ||||||
| 5 | 142125897 | 1 | 1 | rs4912623 | T | A | 0.78 | 0.65 | 0.66 | 0.61 | BLD | Foxk1,Pou2f2,Sox | 6 hits | NDFIP1 | intronic | ||||||
| 5 | 142127050 | 1 | 1 | rs7737631 | T | G | 0.78 | 0.65 | 0.67 | 0.61 | BLD, LIV | 4 hits | NDFIP1 | intronic | |||||||
| 5 | 142127346 | 1 | 1 | rs6874308 | C | T | 0.79 | 0.65 | 0.65 | 0.61 | 4 tissues | GI | 6 altered motifs | 5 hits | NDFIP1 | intronic | |||||
| 5 | 142128923 | 1 | 1 | rs11739961 | T | G | 0.79 | 0.65 | 0.65 | 0.61 | BLD | 15 tissues | BLD,BLD,BLD | Mxi1,RFX5 | 8 hits | NDFIP1 | intronic | ||||
| 5 | 142129868 | 1 | 1 | rs2338821 | A | G | 0.79 | 0.65 | 0.66 | 0.61 | FAT, SKIN | BLD, LIV, MUS | YY1 | 6 hits | NDFIP1 | intronic | |||||
| 5 | 142129972 | 1 | 1 | rs4391200 | A | G | 0.79 | 0.65 | 0.66 | 0.61 | FAT, SKIN | BLD, LIV, MUS | Zfp187 | 5 hits | NDFIP1 | intronic | |||||
| 5 | 142130032 | 1 | 1 | rs10062349 | G | A | 0.79 | 0.65 | 0.66 | 0.61 | DMRT7,Mef2,Pax-4 | 5 hits | NDFIP1 | intronic | |||||||
| 5 | 142130420 | 1 | 1 | rs6860138 | G | A | 0.79 | 0.65 | 0.66 | 0.61 | FAT | BLD, FAT, LIV | BLD | 4 altered motifs | 8 hits | NDFIP1 | intronic | ||||
| 5 | 142130883 | 1 | 1 | rs6580228 | C | T | 0.79 | 0.65 | 0.66 | 0.61 | BLD | Sox | 5 hits | NDFIP1 | intronic | ||||||
| 5 | 142131189 | 1 | 1 | rs6580229 | A | G | 0.79 | 0.65 | 0.66 | 0.61 | BLD | Nr2f2,Pax-2 | 5 hits | NDFIP1 | intronic | ||||||
| 5 | 142133639 | 1 | 1 | rs6863411 | A | T | 0.79 | 0.65 | 0.66 | 0.61 | BLD | BLD, LIV, GI | GI | FOXA1,FOXA2,HNF4A | Crx,Gfi1 | 1 hit | 141 hits | 13 hits | NDFIP1 | intronic | |
| 5 | 142134126 | 1 | 1 | rs2043280 | C | G | 0.79 | 0.65 | 0.66 | 0.61 | BLD | BLD, LIV, GI | Gcm1,Mef2 | 8 hits | NDFIP1 | intronic | |||||
| 5 | 142134289 | 1 | 1 | rs7709361 | T | C | 0.79 | 0.65 | 0.66 | 0.61 | BLD | BLD, LIV | RXRA | 1 hit | 8 hits | NDFIP1 | intronic | ||||
| 5 | 142134401 | 1 | 1 | rs7723666 | C | T | 0.79 | 0.65 | 0.66 | 0.61 | BLD | BLD, LIV | Maf,Pou1f1 | 8 hits | NDFIP1 | intronic | |||||
| 5 | 142135999 | 1 | 1 | rs7733850 | C | T | 0.79 | 0.65 | 0.65 | 0.61 | BLD | Foxp1,GATA,Nanog | 8 hits | NDFIP1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 159069404 | 1 | 1 | rs212388 | C | T | 0.32 | 0.45 | 0.37 | 0.58 | ESC, IPSC, BLD | IPSC, BLD, THYM | 5 tissues | MAX | Ik-1,MZF1::1-4,STAT | 3 hits | 379 hits | 1 hit | 4.1kb 5' of RP1-111C20.3 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 206766559 | 1 | 1 | rs3024505 | G | A | 0.04 | 0.10 | 0.02 | 0.17 | BLD, BONE | 15 tissues | 34 tissues | 22 bound proteins | MZF1::1-4,Pax-4 | 7 hits | 257 hits | 1kb 3' of IL10 | |||
| 1 | 206769068 | 1 | 1 | rs3024495 | C | T | 0.02 | 0.10 | 0.02 | 0.17 | BLD, GI | 11 tissues | BLD,SKIN | IL10 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 67234232 | 1 | 1 | rs79755370 | C | A | 0.01 | 0.06 | 0.00 | 0.06 | 29 tissues | 4 bound proteins | IL23R | intronic | |||||||
| 1 | 67240275 | 1 | 1 | rs11209026 | G | A | 0.01 | 0.06 | 0.00 | 0.06 | GR | 15 hits | 3 hits | IL23R | missense | ||||||
| 1 | 67242007 | 1 | 1 | rs11581607 | G | A | 0.01 | 0.06 | 0.00 | 0.06 | 4 altered motifs | IL23R | intronic | ||||||||
| 1 | 67247663 | 1 | 1 | rs113935720 | T | C | 0.01 | 0.06 | 0.00 | 0.06 | 4 altered motifs | IL23R | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 35156660 | 1 | 1 | rs1545757 | A | T | 0.16 | 0.33 | 0.31 | 0.37 | HRT, BLD | 6 altered motifs | 11 hits | CREM | intronic | ||||||
| 10 | 35157937 | 1 | 1 | rs12784482 | A | G | 0.16 | 0.33 | 0.31 | 0.37 | ESDR | 4 altered motifs | 11 hits | CREM | intronic | ||||||
| 10 | 35160300 | 1 | 1 | rs34630580 | A | G | 0.21 | 0.33 | 0.31 | 0.37 | BLD | 11 hits | CREM | intronic | |||||||
| 10 | 35161679 | 1 | 1 | rs12782948 | G | A | 0.33 | 0.36 | 0.31 | 0.37 | 8 altered motifs | 11 hits | CREM | intronic | |||||||
| 10 | 35163213 | 1 | 1 | rs35126129 | G | A | 0.21 | 0.33 | 0.31 | 0.37 | 6 altered motifs | 11 hits | CREM | intronic | |||||||
| 10 | 35166048 | 1 | 1 | rs10827493 | C | T | 0.33 | 0.36 | 0.31 | 0.37 | Dmbx1,Pou5f1,Sox | 11 hits | CREM | intronic | |||||||
| 10 | 35166408 | 1 | 1 | rs35847586 | A | G | 0.16 | 0.33 | 0.31 | 0.37 | 6 altered motifs | 11 hits | CREM | intronic | |||||||
| 10 | 35167287 | 1 | 1 | rs17499811 | G | A | 0.17 | 0.33 | 0.31 | 0.37 | GR | 11 hits | CREM | intronic | |||||||
| 10 | 35171048 | 1 | 1 | rs10508816 | G | A | 0.48 | 0.37 | 0.32 | 0.37 | Pou2f2 | 1 hit | 11 hits | CREM | intronic | ||||||
| 10 | 35172011 | 1 | 1 | rs35146199 | T | C | 0.16 | 0.33 | 0.31 | 0.37 | 7 tissues | IPSC | 4 altered motifs | 11 hits | CREM | intronic | |||||
| 10 | 35172110 | 1 | 1 | rs9665538 | T | C | 0.36 | 0.36 | 0.31 | 0.37 | 10 tissues | Foxp1,PLZF,Sox | 11 hits | CREM | intronic | ||||||
| 10 | 35177257 | 1 | 1 | rs34779708 | T | G | 0.31 | 0.35 | 0.32 | 0.37 | HRT | Ik-1,STAT | 11 hits | CREM | intronic | ||||||
| 10 | 35178743 | 1 | 1 | rs12260130 | C | T | 0.34 | 0.36 | 0.31 | 0.37 | HRT | ESC | BRN,HRT,LNG | Hand1 | 11 hits | CREM | intronic | ||||
| 10 | 35183222 | 1 | 1 | rs4934538 | T | C | 0.16 | 0.33 | 0.31 | 0.37 | BRN, LNG | LNG | TCF4 | 1 hit | 11 hits | CREM | intronic | ||||
| 10 | 35183271 | 1 | 1 | rs4934539 | A | G | 0.33 | 0.36 | 0.31 | 0.37 | BRN, LNG | LNG | 8 altered motifs | 11 hits | CREM | intronic | |||||
| 10 | 35184107 | 1 | 1 | rs1478463 | G | A | 0.33 | 0.36 | 0.31 | 0.37 | BLD | Dbx1,Pax-4,Zfp105 | 11 hits | CREM | intronic | ||||||
| 10 | 35184999 | 1 | 1 | rs12777517 | T | G | 0.21 | 0.33 | 0.31 | 0.37 | BLD | FAT, BLD, LIV | BLD | 9 altered motifs | 11 hits | CREM | intronic | ||||
| 10 | 35185493 | 1 | -1 | rs2505639 | A | G | 0.37 | 0.62 | 0.68 | 0.63 | 4 tissues | ADRL,HRT,BLD | BCL11A | 20 altered motifs | 11 hits | CREM | intronic | ||||
| 10 | 35185771 | 1 | 1 | rs4934540 | T | C | 0.33 | 0.35 | 0.31 | 0.37 | 5 tissues | 5 tissues | 4 bound proteins | 4 hits | 11 hits | CREM | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 4 | 38323415 | 1 | 1 | rs6856616 | T | C | 0.32 | 0.16 | 0.24 | 0.05 | BLD | 8 tissues | CRVX,BLD | 9 bound proteins | 4 altered motifs | 1 hit | 36kb 3' of RP11-600L4.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 233248491 | 1 | 1 | rs11680089 | G | C | 0.28 | 0.39 | 0.33 | 0.53 | BRST, BLD, SKIN | 7 altered motifs | 8 hits | ATG16L1 | |||||||
| 2 | 233248612 | 1 | 1 | rs11680130 | G | A | 0.25 | 0.38 | 0.33 | 0.53 | BLD, SKIN | 8 hits | ATG16L1 | ||||||||
| 2 | 233249042 | 1 | 1 | rs56049444 | C | T | 0.17 | 0.37 | 0.33 | 0.53 | BLD | BLD, THYM | 5 tissues | 8 hits | ATG16L1 | ||||||
| 2 | 233249087 | 1 | 1 | rs55835501 | C | T | 0.25 | 0.39 | 0.33 | 0.53 | BLD | BLD, THYM | 7 tissues | AIRE | 7 hits | ATG16L1 | |||||
| 2 | 233249095 | 1 | 1 | rs56227616 | T | C | 0.20 | 0.38 | 0.33 | 0.53 | BLD | BLD, THYM | 8 tissues | RFX5 | 7 hits | ATG16L1 | |||||
| 2 | 233250193 | 1 | 1 | rs10210302 | C | T | 0.25 | 0.38 | 0.33 | 0.53 | VAS | Hlx1 | 1 hit | 2 hits | 9 hits | ATG16L1 | |||||
| 2 | 233251699 | 1 | 1 | rs2289477 | T | G | 0.26 | 0.39 | 0.33 | 0.53 | 24 tissues | 53 tissues | 33 bound proteins | AP-2,Pbx3,Znf143 | 7 hits | ATG16L1 | 5'-UTR | ||||
| 2 | 233252802 | 1 | 1 | rs6752107 | G | A | 0.26 | 0.39 | 0.33 | 0.53 | 21 tissues | 7 tissues | 1 hit | 10 hits | ATG16L1 | intronic | |||||
| 2 | 233252937 | 1 | 1 | rs6738490 | T | C | 0.26 | 0.39 | 0.33 | 0.53 | 21 tissues | 7 tissues | BLD | GATA1 | 8 hits | ATG16L1 | intronic | ||||
| 2 | 233253123 | 1 | 1 | rs6431654 | C | T | 0.26 | 0.39 | 0.33 | 0.53 | 19 tissues | 12 tissues | BLD,LNG,BLD | GATA1 | Nanog | 1 hit | 10 hits | ATG16L1 | intronic | ||
| 2 | 233253507 | 1 | 1 | rs6745825 | A | G | 0.26 | 0.39 | 0.33 | 0.53 | BLD, LIV | 19 tissues | GI | 6 altered motifs | 8 hits | ATG16L1 | intronic | ||||
| 2 | 233255037 | 1 | 1 | rs6705964 | G | C | 0.25 | 0.39 | 0.33 | 0.53 | BLD | 6 tissues | 4 altered motifs | 9 hits | ATG16L1 | intronic | |||||
| 2 | 233258588 | 1 | 1 | rs6431660 | A | G | 0.17 | 0.36 | 0.33 | 0.53 | BLD | 8 altered motifs | 11 hits | ATG16L1 | intronic | ||||||
| 2 | 233258775 | 1 | 1 | rs6431661 | C | T | 0.21 | 0.36 | 0.33 | 0.53 | BLD, STRM | AIRE | 8 hits | ATG16L1 | intronic | ||||||
| 2 | 233259235 | 1 | 1 | rs34123137 | T | A | 0.20 | 0.36 | 0.33 | 0.53 | BLD, STRM, GI | 5 altered motifs | 8 hits | ATG16L1 | intronic | ||||||
| 2 | 233260144 | 1 | 1 | rs35300242 | G | A | 0.20 | 0.36 | 0.33 | 0.53 | 4 tissues | BLD | 15 altered motifs | 8 hits | ATG16L1 | intronic | |||||
| 2 | 233261176 | 1 | 1 | rs10164737 | C | T | 0.10 | 0.36 | 0.33 | 0.53 | 9 hits | ATG16L1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 159349993 | 1 | 1 | rs7725339 | G | T | 0.41 | 0.34 | 0.44 | 0.34 | BLD | Foxp3 | AC008697.1 | intronic | |||||||
| 5 | 159360377 | 1 | 1 | rs6556412 | G | A | 0.40 | 0.34 | 0.44 | 0.34 | BLD | 1 hit | AC008697.1 | intronic | |||||||
| 5 | 159363125 | 1 | 1 | rs56276983 | GT | G | 0.41 | 0.48 | 0.49 | 0.34 | BLD | 6 altered motifs | 290bp 3' of AC008697.1 | ||||||||
| 5 | 159370719 | 1 | 1 | rs12515766 | C | G | 0.40 | 0.48 | 0.49 | 0.34 | 4 altered motifs | 7.9kb 3' of AC008697.1 | |||||||||
| 5 | 159371067 | 1 | 1 | rs6898844 | A | G | 0.40 | 0.48 | 0.49 | 0.34 | Gfi1,Gfi1b,Pou3f3 | 8.2kb 3' of AC008697.1 | |||||||||
| 5 | 159374179 | 1 | 1 | rs6864071 | G | A | 0.39 | 0.34 | 0.44 | 0.34 | Hoxa9 | 11kb 3' of AC008697.1 | |||||||||
| 5 | 159375435 | 1 | 1 | rs4413517 | C | T | 0.51 | 0.34 | 0.44 | 0.34 | 9 altered motifs | 13kb 3' of AC008697.1 | |||||||||
| 5 | 159377174 | 1 | 1 | rs4921224 | C | T | 0.50 | 0.34 | 0.44 | 0.34 | NRSF | 14kb 3' of AC008697.1 | |||||||||
| 5 | 159377920 | 1 | 1 | rs4379175 | G | T | 0.50 | 0.34 | 0.43 | 0.34 | GI | 15kb 3' of AC008697.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 50886648 | 1 | 1 | rs8053407 | G | A | 0.19 | 0.11 | 0.08 | 0.14 | 11 altered motifs | RP11-883G14.1 | |||||||||
| 16 | 50887672 | 1 | 1 | rs59140851 | C | A | 0.17 | 0.11 | 0.08 | 0.14 | BLD | IPSC,BLD | BHLHE40 | RP11-883G14.1 | |||||||
| 16 | 50887903 | 1 | 1 | rs16949029 | G | C | 0.17 | 0.11 | 0.08 | 0.14 | Nkx2 | RP11-883G14.1 | |||||||||
| 16 | 50888209 | 1 | 1 | rs1874494 | A | G | 0.17 | 0.11 | 0.06 | 0.14 | NRSF | NRSF,RXRA | 1 hit | RP11-883G14.1 | |||||||
| 16 | 50888875 | 1 | 1 | rs13333062 | G | A | 0.18 | 0.11 | 0.06 | 0.14 | TBX5 | 1 hit | RP11-883G14.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 85975655 | 1 | 1 | rs2885363 | G | C | 0.16 | 0.06 | 0.01 | 0.08 | GI, LIV | 8 tissues | 7 tissues | CTCF | AP-1,Elf5 | 1 hit | 53kb 3' of IRF8 | ||||
| 16 | 85976080 | 1 | 1 | rs2361755 | G | C | 0.15 | 0.06 | 0.01 | 0.08 | BLD, LIV, GI | GI,LIV | Zec | 1 hit | 1 hit | 53kb 3' of IRF8 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 60977506 | 1 | 1 | rs7608697 | A | C | 0.68 | 0.32 | 0.05 | 0.37 | BLD | BLD, SKIN | SKIN | BCL11A,IRF4 | 5 altered motifs | 17 hits | PUS10 | intronic | |||
| 2 | 60977553 | 1 | 1 | rs7596362 | T | C | 0.91 | 0.33 | 0.05 | 0.37 | BLD | BLD, SKIN | SKIN | IRF4 | 4 altered motifs | 17 hits | PUS10 | intronic | |||
| 2 | 60977721 | 1 | 1 | rs7608910 | A | G | 0.43 | 0.30 | 0.05 | 0.37 | BLD | LNG, BLD | SKIN | 2 hits | 405 hits | 15 hits | PUS10 | intronic | |||
| 2 | 60977782 | 1 | 1 | rs4560096 | T | G | 0.43 | 0.30 | 0.05 | 0.37 | BLD | LNG, BLD | AP-4,Sin3Ak-20 | 13 hits | PUS10 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 50718253 | 1 | 1 | rs62029864 | G | A | 0.05 | 0.15 | 0.00 | 0.22 | FAT, SKIN | 6 tissues | 6 tissues | GATA2 | GR,Irf,Nkx2 | 1 hit | NOD2 | intronic | |||
| 16 | 50722970 | 1 | 1 | rs2076756 | A | G | 0.05 | 0.15 | 0.00 | 0.22 | BLD | Mef2,Nanog | 6 hits | 1 hit | 3 hits | NOD2 | intronic | ||||
| 16 | 50724938 | 1 | 1 | rs749910 | G | A | 0.05 | 0.15 | 0.00 | 0.22 | BLD | LNG | HEY1,TATA | 1 hit | NOD2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 3 | 18723811 | 1 | 1 | rs34748598 | T | C | 0.03 | 0.10 | 0.14 | 0.15 | BLD | BLD, THYM, GI | CEBPD,DMRT7 | AC105750.1 | |||||||
| 3 | 18724013 | 1 | 1 | rs35709387 | T | A | 0.03 | 0.10 | 0.14 | 0.15 | BLD | BLD, THYM, GI | Bbx,CEBPG,TATA | AC105750.1 | |||||||
| 3 | 18724114 | 1 | 1 | rs34563045 | G | T | 0.03 | 0.10 | 0.14 | 0.15 | BLD | 4 tissues | Mef2,Smad3 | AC105750.1 | |||||||
| 3 | 18724486 | 1 | 1 | rs11713774 | T | C | 0.04 | 0.10 | 0.14 | 0.15 | BLD | 4 tissues | 8 altered motifs | 1 hit | AC105750.1 | ||||||
| 3 | 18724663 | 1 | 1 | rs34834433 | T | TCAA | 0.04 | 0.11 | 0.14 | 0.15 | BLD | BLD, SKIN, THYM | BLD,BLD | EBF,HNF4 | AC105750.1 | ||||||
| 3 | 18724905 | 1 | 1 | rs11718328 | A | G | 0.04 | 0.10 | 0.14 | 0.15 | BLD | 4 tissues | BLD | 6 altered motifs | AC105750.1 | ||||||
| 3 | 18725564 | 1 | 1 | rs34599998 | C | T | 0.04 | 0.10 | 0.14 | 0.15 | BLD | BLD, SKIN, THYM | BLD,BLD,BLD | CTCF,DEC,RXRA | AC105750.1 | ||||||
| 3 | 18725876 | 1 | 1 | rs4257569 | C | T | 0.04 | 0.10 | 0.14 | 0.15 | BLD | 5 tissues | 9 tissues | ERALPHA_A | 4 altered motifs | AC105750.1 | |||||
| 3 | 18725912 | 1 | 1 | rs4256159 | C | T | 0.04 | 0.10 | 0.14 | 0.15 | BLD | 6 tissues | 10 tissues | ERALPHA_A,CEBPB | 1 hit | 544 hits | AC105750.1 | ||||
| 3 | 18729087 | 1 | 1 | rs4128758 | C | G | 0.04 | 0.10 | 0.14 | 0.15 | BLD | 4 altered motifs | AC105750.1 | ||||||||
| 3 | 18729093 | 1 | 1 | rs4128757 | A | T | 0.04 | 0.10 | 0.14 | 0.15 | BLD | 4 altered motifs | AC105750.1 | ||||||||
| 3 | 18729302 | 1 | 1 | rs4128756 | G | T | 0.04 | 0.10 | 0.14 | 0.15 | BLD | 4 altered motifs | AC105750.1 | ||||||||
| 3 | 18730452 | 1 | 1 | rs66486067 | T | C | 0.04 | 0.10 | 0.14 | 0.15 | BLD | RREB-1,SREBP | AC105750.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 14 | 87998543 | 1 | 1 | rs10220572 | C | G | 0.41 | 0.17 | 0.19 | 0.09 | GI,BLD,BLD | HNF4,Hdx | 1 hit | 2.1kb 5' of U6 | |||||||
| 14 | 88000797 | 1 | 1 | rs8006352 | G | T | 0.41 | 0.17 | 0.19 | 0.09 | BLD | 6 altered motifs | 1 hit | 4.3kb 5' of GPR65 | |||||||
| 14 | 88001228 | 1 | 1 | rs8007233 | G | A | 0.41 | 0.17 | 0.19 | 0.09 | BLD | DMRT1 | 1 hit | 3.9kb 5' of GPR65 | |||||||
| 14 | 88004037 | 1 | 1 | rs73312867 | A | C | 0.18 | 0.12 | 0.19 | 0.09 | BLD | BLD | BLD | 9 altered motifs | 1.1kb 5' of GPR65 | ||||||
| 14 | 88004797 | 1 | 1 | rs28667727 | T | C | 0.41 | 0.17 | 0.19 | 0.09 | BLD, GI | BLD, THYM | BLD,BLD | 5 altered motifs | 1 hit | 326bp 5' of GPR65 | |||||
| 14 | 88006251 | 1 | 1 | rs8005161 | C | T | 0.41 | 0.17 | 0.19 | 0.09 | 6 tissues | BLD, GI | 9 tissues | 4 bound proteins | 2 hits | 119 hits | 3 hits | GPR65 | intronic | ||
| 14 | 88009435 | 1 | 1 | rs72160890 | 12-mer | T | 0.41 | 0.17 | 0.19 | 0.09 | BLD | BLD, THYM | BLD | LUN-1,Pou3f1 | 1 hit | GPR65 | intronic | ||||
| 14 | 88011538 | 1 | 1 | rs3742704 | A | C | 0.18 | 0.13 | 0.19 | 0.09 | BLD | 4 tissues | Pax-4 | 1 hit | 2 hits | RP11-300J18.2 | missense | ||||
| 14 | 88012483 | 1 | 1 | rs12434101 | T | C | 0.20 | 0.13 | 0.19 | 0.09 | BLD | LNG | RP11-300J18.2 | 3'-UTR | |||||||
| 14 | 88022477 | 1 | 1 | rs11624293 | T | C | 0.20 | 0.13 | 0.19 | 0.09 | HRT, LIV | PRDM1,Zbtb3 | 2 hits | RP11-300J18.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 9 | 4981602 | 1 | 1 | rs10758669 | C | A | 0.87 | 0.59 | 0.67 | 0.64 | MUS | LUN-1,Spz1 | 5 hits | 338 hits | 1 hit | 3.4kb 5' of JAK2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 7 | 50264865 | 1 | 1 | rs1456896 | C | T | 0.58 | 0.72 | 0.42 | 0.68 | BLD | BLD, THYM | 5 tissues | HNF4 | 2 hits | 321 hits | 9.9kb 3' of AC020743.4 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 233273202 | 1 | 1 | rs2289474 | C | T | 0.25 | 0.38 | 0.33 | 0.53 | BLD | 10 hits | ATG16L1 | intronic | |||||||
| 2 | 233273594 | 1 | 1 | rs2289472 | C | T | 0.25 | 0.38 | 0.33 | 0.53 | BLD | 4 altered motifs | 1 hit | 10 hits | ATG16L1 | intronic | |||||
| 2 | 233274722 | 1 | 1 | rs2241880 | A | G | 0.25 | 0.38 | 0.33 | 0.53 | NRSF | 3 hits | 4 hits | 10 hits | ATG16L1 | missense | |||||
| 2 | 233274822 | 1 | 1 | rs2241879 | G | A | 0.25 | 0.38 | 0.33 | 0.53 | RFX5,Spz1,ZID | 10 hits | ATG16L1 | intronic | |||||||
| 2 | 233275072 | 1 | 1 | rs2241878 | T | C | 0.25 | 0.38 | 0.33 | 0.53 | 14 altered motifs | 10 hits | ATG16L1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 73244023 | 1 | 1 | rs34804116 | C | A | 0.51 | 0.34 | 0.16 | 0.37 | NF-I | RP11-60A8.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 13 | 43883789 | 1 | 1 | rs3764147 | A | G | 0.33 | 0.37 | 0.32 | 0.24 | FAT | 6 tissues | 5 altered motifs | 4 hits | 321 hits | 17 hits | LACC1 | missense | |||
| 13 | 43886106 | 1 | 1 | rs1932990 | C | T | 0.33 | 0.37 | 0.32 | 0.24 | 9 altered motifs | 17 hits | LACC1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 230232414 | 1 | 1 | rs6716753 | T | C | 0.20 | 0.15 | 0.00 | 0.19 | BLD, BRN | CEBPB | 1 hit | 105 hits | 35 hits | AC009950.1 | intronic | ||||
| 2 | 230233325 | 1 | 1 | rs6436922 | A | G | 0.21 | 0.17 | 0.00 | 0.19 | BLD | PLZF,Pax-4,TATA | 35 hits | AC009950.1 | intronic | ||||||
| 2 | 230233763 | 1 | 1 | rs1946410 | C | T | 0.20 | 0.15 | 0.00 | 0.19 | BLD | PLZF,TATA | 32 hits | AC009950.1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 1 | rs113653754 | 19 hits |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 17 | 34266646 | 1 | 1 | rs3091315 | A | G | 0.41 | 0.47 | 0.62 | 0.32 | FAT, BLD | 5 altered motifs | 1 hit | 363 hits | 3.6kb 5' of CCL7 | ||||||
| 17 | 34266955 | 1 | 1 | rs3091316 | G | A | 0.26 | 0.46 | 0.62 | 0.32 | BLD | Gmeb1,Mef2,Pou2f2 | 2 hits | 3.3kb 5' of CCL7 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 1 | rs3180018 | 1 hit |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 13 | 43883789 | 1 | 1 | rs3764147 | A | G | 0.33 | 0.37 | 0.32 | 0.24 | FAT | 6 tissues | 5 altered motifs | 4 hits | 321 hits | 17 hits | LACC1 | missense | |||
| 13 | 43886106 | 1 | 1 | rs1932990 | C | T | 0.33 | 0.37 | 0.32 | 0.24 | 9 altered motifs | 17 hits | LACC1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 43579779 | 1 | 1 | rs10495903 | C | T | 0.17 | 0.10 | 0.01 | 0.11 | RFX5,SMC3 | 2 hits | 230 hits | 1 hit | THADA | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 19 | 10402235 | 1 | 1 | rs11879191 | G | A | 0.17 | 0.18 | 0.46 | 0.18 | 21 tissues | 11 tissues | 21 tissues | RXRA,Spz1,ZBTB33 | 1 hit | 157 hits | 15 hits | CDC37 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 20 | 63697746 | 1 | 1 | rs6062496 | G | A | 0.44 | 0.46 | 0.12 | 0.58 | 5 tissues | 18 tissues | 10 tissues | POL2 | 5 altered motifs | 3 hits | RTEL1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 230249416 | 1 | 1 | rs9989899 | G | A | 0.16 | 0.14 | 0.00 | 0.18 | 4 altered motifs | 1 hit | 35 hits | SP140 | intronic | ||||||
| 2 | 230250275 | 1 | 1 | rs34855578 | C | G | 0.15 | 0.14 | 0.00 | 0.18 | 4 altered motifs | 32 hits | SP140 | intronic | |||||||
| 2 | 230250280 | 1 | 1 | rs35857956 | C | T | 0.15 | 0.14 | 0.00 | 0.18 | 32 hits | SP140 | intronic | ||||||||
| 2 | 230250739 | 1 | 1 | rs9989735 | G | C | 0.12 | 0.13 | 0.00 | 0.18 | POL24H8 | 20 altered motifs | 33 hits | SP140 | intronic | ||||||
| 2 | 230250915 | 1 | 1 | rs9989835 | A | T | 0.16 | 0.14 | 0.00 | 0.18 | ZBRK1 | 35 hits | SP140 | intronic | |||||||
| 2 | 230251261 | 1 | 1 | rs13385151 | C | T | 0.12 | 0.13 | 0.00 | 0.18 | Sp100 | 36 hits | SP140 | intronic | |||||||
| 2 | 230251702 | 1 | 1 | rs10498246 | T | A | 0.16 | 0.14 | 0.00 | 0.18 | Hoxa13,RXRA | 35 hits | SP140 | intronic | |||||||
| 2 | 230252159 | 1 | 1 | rs7423615 | C | T | 0.12 | 0.13 | 0.00 | 0.18 | BLD | GATA | 1 hit | 35 hits | SP140 | intronic | |||||
| 2 | 230255199 | 1 | 1 | rs28693552 | G | C | 0.13 | 0.14 | 0.00 | 0.18 | BLD | BLD, THYM | 21 altered motifs | 33 hits | SP140 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 159387525 | 1 | 1 | rs10045431 | A | C | 0.92 | 0.79 | 0.90 | 0.72 | 4 altered motifs | 2 hits | 3 hits | 1 hit | 25kb 3' of AC008697.1 | ||||||
| 5 | 159387569 | 1 | 1 | rs10046001 | T | G | 0.92 | 0.79 | 0.90 | 0.72 | 10 altered motifs | 25kb 3' of AC008697.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 9 | 114830358 | 1 | 1 | rs2006996 | T | C | 0.05 | 0.14 | 0.36 | 0.04 | 5 tissues | SKIN | Pou5f1 | 1 hit | 1 hit | 24kb 5' of TNFSF15 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 73909432 | 1 | 1 | rs2227551 | G | T | 0.59 | 0.55 | 0.44 | 0.73 | 7 tissues | 18 tissues | 40 tissues | 10 bound proteins | 15 altered motifs | 611 hits | 8 hits | PLAU |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 22 | 30097893 | 1 | 1 | rs5763767 | G | A | 0.71 | 0.56 | 0.31 | 0.45 | BLD | BCL,GATA,NRSF | 175 hits | 8 hits | HORMAD2 | intronic | |||||
| 22 | 30098382 | 1 | 1 | rs2412971 | G | A | 0.71 | 0.56 | 0.31 | 0.45 | BLD | BRCA1,Brachyury,NRSF | 3 hits | 2 hits | 8 hits | HORMAD2 | intronic | ||||
| 22 | 30116269 | 1 | 1 | rs4823073 | G | A | 0.71 | 0.56 | 0.32 | 0.45 | LNG | 11 tissues | 4 tissues | 4 hits | HORMAD2 | intronic | |||||
| 22 | 30116489 | 1 | 1 | rs4823074 | G | A | 0.71 | 0.56 | 0.32 | 0.45 | LNG | 11 tissues | 19 tissues | 5 altered motifs | 8 hits | HORMAD2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 11 | 76590211 | 1 | 1 | rs7926914 | G | T | 0.29 | 0.26 | 0.19 | 0.36 | 10 tissues | 16 altered motifs | 35kb 3' of RP11-672A2.6 | ||||||||
| 11 | 76590272 | 1 | 1 | rs7927894 | C | T | 0.28 | 0.26 | 0.20 | 0.36 | 10 tissues | Pax-4 | 2 hits | 2 hits | 35kb 3' of RP11-672A2.6 | ||||||
| 11 | 76590331 | 1 | 1 | rs7927997 | C | T | 0.24 | 0.26 | 0.20 | 0.36 | 10 tissues | THYM | 4 altered motifs | 1 hit | 35kb 3' of RP11-672A2.6 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 6038391 | 1 | 1 | rs41294713 | T | C | 0.05 | 0.08 | 0.12 | 0.14 | BLD | BLD, THYM | 4 tissues | GATA2 | 10 altered motifs | IL2RA | intronic | ||||
| 10 | 6039267 | 1 | 1 | rs12722515 | C | A | 0.07 | 0.08 | 0.12 | 0.14 | BLD | 1 hit | 333 hits | IL2RA | intronic | ||||||
| 10 | 6048359 | 1 | 1 | rs791590 | A | T | 0.05 | 0.08 | 0.13 | 0.14 | BLD, THYM | BLD | Bbx,CEBPB,Hbp1 | IL2RA | intronic | ||||||
| 10 | 6050247 | 1 | 1 | rs2246031 | C | T | 0.06 | 0.08 | 0.13 | 0.14 | BLD, GI | 11 tissues | 11 tissues | BATF,NFKB | TATA | IL2RA | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 19 | 10359299 | 1 | 1 | rs12720356 | A | C | 0.01 | 0.05 | 0.00 | 0.10 | PLCNT | 2 hits | 5 hits | 8 hits | TYK2 | missense |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 233273202 | 1 | 1 | rs2289474 | C | T | 0.25 | 0.38 | 0.33 | 0.53 | BLD | 10 hits | ATG16L1 | intronic | |||||||
| 2 | 233273594 | 1 | 1 | rs2289472 | C | T | 0.25 | 0.38 | 0.33 | 0.53 | BLD | 4 altered motifs | 1 hit | 10 hits | ATG16L1 | intronic | |||||
| 2 | 233274722 | 1 | 1 | rs2241880 | A | G | 0.25 | 0.38 | 0.33 | 0.53 | NRSF | 3 hits | 4 hits | 10 hits | ATG16L1 | missense | |||||
| 2 | 233274822 | 1 | 1 | rs2241879 | G | A | 0.25 | 0.38 | 0.33 | 0.53 | RFX5,Spz1,ZID | 10 hits | ATG16L1 | intronic | |||||||
| 2 | 233275072 | 1 | 1 | rs2241878 | T | C | 0.25 | 0.38 | 0.33 | 0.53 | 14 altered motifs | 10 hits | ATG16L1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 167024500 | 1 | 1 | rs2301436 | C | T | 0.33 | 0.39 | 0.37 | 0.44 | Gfi1 | 2 hits | 1 hit | 14 hits | FGFR1OP | intronic | |||||
| 6 | 167026640 | 1 | 1 | rs2282861 | C | T | 0.33 | 0.40 | 0.47 | 0.44 | BRCA1,Homez | 13 hits | FGFR1OP | intronic | |||||||
| 6 | 167026756 | 1 | 1 | rs2282860 | T | C | 0.33 | 0.40 | 0.47 | 0.44 | IPSC | GR,Myc | 13 hits | FGFR1OP | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 10695414 | 1 | 1 | rs2930047 | T | C | 0.79 | 0.48 | 0.75 | 0.39 | BRN, GI | 18 tissues | 7 tissues | 5 bound proteins | 1 hit | 648 hits | 18 hits | DAP | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 3 | 49684099 | 1 | 1 | rs3197999 | G | A | 0.24 | 0.22 | 0.06 | 0.31 | 5 tissues | OVRY | SMC3,TCF12,ZBRK1 | 6 hits | 467 hits | 59 hits | MST1 | missense |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 4 | 101944147 | 1 | 1 | rs13126505 | G | A | 0.00 | 0.03 | 0.00 | 0.06 | ESC, ESDR | 1 hit | 528 hits | BANK1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 40431081 | 1 | 1 | rs1373692 | A | C | 0.68 | 0.51 | 0.15 | 0.58 | BRST, BLD, GI | 1 hit | 111kb 3' of AC108105.1 | ||||||||
| 5 | 40431562 | 1 | 1 | rs1445001 | A | G | 0.68 | 0.51 | 0.15 | 0.58 | GI, BLD | PLCNT | GATA3 | AP-2,EBF,Nkx2 | 111kb 3' of AC108105.1 | ||||||
| 5 | 40432310 | 1 | 1 | rs6861824 | A | G | 0.68 | 0.51 | 0.15 | 0.58 | GI, BLD | 8 altered motifs | 112kb 3' of AC108105.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 40360356 | 1 | 1 | rs11743463 | C | A | 0.22 | 0.08 | 0.01 | 0.13 | BLD, SKIN | HP1-site-factor,NF-I,Pax-4 | 40kb 3' of AC108105.1 | ||||||||
| 5 | 40362872 | 1 | 1 | rs73082864 | A | G | 0.22 | 0.08 | 0.01 | 0.13 | Nkx3,Pax-8,TATA | 42kb 3' of AC108105.1 | |||||||||
| 5 | 40375054 | 1 | 1 | rs146646093 | A | AAAC | 0.22 | 0.08 | 0.01 | 0.13 | VAS | GR | 55kb 3' of AC108105.1 | ||||||||
| 5 | 40376057 | 1 | 1 | rs56244034 | A | T | 0.22 | 0.08 | 0.01 | 0.13 | BLD | Nkx6-1 | 56kb 3' of AC108105.1 | ||||||||
| 5 | 40377764 | 1 | 1 | rs17227583 | T | C | 0.22 | 0.08 | 0.01 | 0.13 | BLD, THYM | TAL1,TATA | 57kb 3' of AC108105.1 | ||||||||
| 5 | 40383959 | 1 | 1 | rs895123 | C | G | 0.22 | 0.08 | 0.01 | 0.13 | BLD | 15 tissues | 22 tissues | CJUN,P300,STAT3 | Mxi1,Myc | 64kb 3' of AC108105.1 | |||||
| 5 | 40389185 | 1 | 1 | rs1124233 | G | A | 0.24 | 0.08 | 0.01 | 0.13 | BLD, THYM, GI | 4 altered motifs | 69kb 3' of AC108105.1 | ||||||||
| 5 | 40392124 | 1 | 1 | rs2371685 | A | T | 0.22 | 0.08 | 0.01 | 0.13 | BLD, GI | Bbx,Bcl6b,Sox | 72kb 3' of AC108105.1 | ||||||||
| 5 | 40392626 | 1 | 1 | rs4613763 | T | C | 0.22 | 0.08 | 0.01 | 0.13 | BLD, GI | BAF155,SIX5,Znf143 | 2 hits | 1 hit | 72kb 3' of AC108105.1 | ||||||
| 5 | 40394099 | 1 | 1 | rs10512735 | G | T | 0.22 | 0.08 | 0.01 | 0.13 | Nrf1 | 74kb 3' of AC108105.1 | |||||||||
| 5 | 40396323 | 1 | 1 | rs11749040 | G | A | 0.23 | 0.08 | 0.01 | 0.13 | MUS, GI | Foxk1 | 76kb 3' of AC108105.1 | ||||||||
| 5 | 40399918 | 1 | 1 | rs11738106 | T | A | 0.22 | 0.08 | 0.01 | 0.13 | 6 tissues | 80kb 3' of AC108105.1 | |||||||||
| 5 | 40401407 | 1 | 1 | rs17234657 | T | G | 0.22 | 0.08 | 0.01 | 0.13 | 14 tissues | 15 tissues | Myc | 1 hit | 1 hit | 81kb 3' of AC108105.1 | |||||
| 5 | 40402131 | 1 | 1 | rs6879283 | T | C | 0.22 | 0.08 | 0.01 | 0.13 | 12 tissues | 20 tissues | 13 bound proteins | Nkx2 | 82kb 3' of AC108105.1 | ||||||
| 5 | 40403091 | 1 | 1 | rs1373694 | G | A | 0.22 | 0.08 | 0.01 | 0.13 | BLD | 5 altered motifs | 83kb 3' of AC108105.1 | ||||||||
| 5 | 40406883 | 1 | 1 | rs6896243 | C | T | 0.22 | 0.08 | 0.01 | 0.13 | BLD, LIV | 9 tissues | 11 tissues | Pax-4 | 86kb 3' of AC108105.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 11 | 61784455 | 1 | 1 | rs174536 | A | C | 0.04 | 0.55 | 0.41 | 0.36 | 8 tissues | LIV | HEN1,ZBTB7A | 2 hits | 114 hits | 44 hits | C11orf9 | intronic | |||
| 11 | 61785208 | 1 | 1 | rs174537 | G | T | 0.04 | 0.55 | 0.41 | 0.36 | ESDR, IPSC, SKIN | HNF4 | 2 hits | 705 hits | 44 hits | C11orf9 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 102426850 | 1 | 1 | rs35711445 | TA | T | 0.90 | 0.57 | 0.58 | 0.79 | BLD | BLD | 4 altered motifs | IL18RAP | intronic | ||||||
| 2 | 102428560 | 1 | 1 | rs11694658 | A | G | 0.88 | 0.57 | 0.58 | 0.79 | BLD | Gmeb1,Hdx,ZBTB33 | 7 hits | 15 hits | IL18RAP | intronic | |||||
| 2 | 102430420 | 1 | 1 | rs2160232 | G | A | 0.89 | 0.57 | 0.58 | 0.79 | BLD | CIZ,YY1 | 7 hits | 15 hits | IL18RAP | intronic | |||||
| 2 | 102431977 | 1 | 1 | rs6713618 | A | T | 0.90 | 0.57 | 0.58 | 0.79 | BLD | 4 altered motifs | 1 hit | 12 hits | IL18RAP | intronic | |||||
| 2 | 102432007 | 1 | 1 | rs6716784 | T | G | 0.90 | 0.57 | 0.58 | 0.79 | BLD | Gfi1,Pou1f1,Sox | 7 hits | 15 hits | IL18RAP | intronic | |||||
| 2 | 102433998 | 1 | 1 | rs6543134 | T | G | 0.90 | 0.57 | 0.58 | 0.79 | BLD | 6 altered motifs | 7 hits | 15 hits | AC007278.2 | intronic | |||||
| 2 | 102434465 | 1 | 1 | rs2110735 | A | G | 0.90 | 0.57 | 0.58 | 0.79 | BLD, MUS | Hic1 | 8 hits | 14 hits | AC007278.2 | intronic | |||||
| 2 | 102435746 | 1 | 1 | rs2110734 | C | T | 0.90 | 0.57 | 0.58 | 0.79 | BLD, GI | 4 altered motifs | 7 hits | 14 hits | IL18RAP | intronic | |||||
| 2 | 102436535 | 1 | 1 | rs6746271 | G | C | 0.89 | 0.57 | 0.58 | 0.79 | BLD | 8 tissues | 19 tissues | 6 bound proteins | Maf | 7 hits | 14 hits | IL18RAP | intronic | ||
| 2 | 102437989 | 1 | 1 | rs2058660 | G | A | 0.89 | 0.57 | 0.58 | 0.79 | BLD | 7 altered motifs | 1 hit | 24 hits | 14 hits | IL18RAP | intronic | ||||
| 2 | 102438343 | 1 | 1 | rs2058658 | T | C | 0.90 | 0.57 | 0.58 | 0.79 | BLD | 4 altered motifs | 7 hits | 14 hits | IL18RAP | intronic | |||||
| 2 | 102439184 | 1 | 1 | rs4851009 | G | A | 0.90 | 0.57 | 0.58 | 0.79 | 7 tissues | 7 hits | 14 hits | IL18RAP | intronic | ||||||
| 2 | 102440627 | 1 | 1 | rs11677107 | C | A | 0.82 | 0.57 | 0.58 | 0.79 | BLD | 4 altered motifs | 1 hit | 12 hits | IL18RAP | intronic | |||||
| 2 | 102441868 | 1 | 1 | rs1558652 | G | A | 0.82 | 0.57 | 0.58 | 0.79 | BLD | 5 altered motifs | 1 hit | 12 hits | IL18RAP | intronic | |||||
| 2 | 102443564 | 1 | 1 | rs1558650 | T | A | 0.90 | 0.57 | 0.58 | 0.79 | 5 tissues | BLD,BLD | CTCF | 7 hits | 14 hits | IL18RAP | intronic | ||||
| 2 | 102443853 | 1 | 1 | rs4851584 | A | G | 0.83 | 0.57 | 0.58 | 0.79 | BLD | DMRT1 | 1 hit | 12 hits | IL18RAP | intronic | |||||
| 2 | 102446420 | 1 | 1 | rs6734736 | C | T | 0.90 | 0.57 | 0.58 | 0.79 | 3 hits | 14 hits | IL18RAP | intronic | |||||||
| 2 | 102446909 | 1 | 1 | rs6708413 | G | A | 0.90 | 0.57 | 0.58 | 0.79 | 6 altered motifs | 238 hits | 14 hits | IL18RAP | intronic | ||||||
| 2 | 102449448 | 1 | 1 | rs6543137 | T | G | 0.89 | 0.57 | 0.58 | 0.79 | 5 tissues | CTCF,SMC3 | 1 hit | 11 hits | IL18RAP | intronic | |||||
| 2 | 102452327 | 1 | 1 | rs7559479 | G | A | 0.89 | 0.57 | 0.58 | 0.79 | GI | 4 altered motifs | 4 hits | 14 hits | IL18RAP | 3'-UTR | |||||
| 2 | 102454108 | 1 | 1 | rs917997 | T | C | 0.89 | 0.57 | 0.58 | 0.79 | BLD, GI | TAL1 | 2 hits | 14 hits | 14 hits | 1.5kb 3' of IL18RAP | |||||
| 2 | 102454528 | 1 | 1 | rs2075185 | A | G | 0.85 | 0.57 | 0.58 | 0.79 | GI | ERalpha-a | 1 hit | 12 hits | 2kb 3' of IL18RAP | ||||||
| 2 | 102457014 | 1 | 1 | rs4851587 | C | T | 0.89 | 0.57 | 0.58 | 0.79 | 10 altered motifs | 1 hit | 11 hits | 4.4kb 3' of IL18RAP | |||||||
| 2 | 102457619 | 1 | 1 | rs6757276 | T | G | 0.89 | 0.57 | 0.58 | 0.79 | 1 hit | 11 hits | 5.1kb 3' of IL18RAP | ||||||||
| 2 | 102458033 | 1 | 1 | rs4070554 | A | G | 0.88 | 0.57 | 0.58 | 0.79 | 7 altered motifs | 3 hits | 14 hits | 5.5kb 3' of IL18RAP | |||||||
| 2 | 102459101 | 1 | 1 | rs6761825 | T | C | 0.88 | 0.57 | 0.58 | 0.79 | 5 altered motifs | 3 hits | 14 hits | 6.5kb 3' of IL18RAP |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 8 | 125522429 | 1 | 1 | rs921720 | A | G | 0.13 | 0.53 | 0.41 | 0.63 | 8 tissues | 6 tissues | 2 hits | 260 hits | RP11-136O12.2 | ||||||
| 8 | 125523895 | 1 | 1 | rs10956252 | C | G | 0.13 | 0.53 | 0.41 | 0.63 | HRT | RP11-136O12.2 | |||||||||
| 8 | 125524937 | 1 | 1 | rs55867617 | C | G | 0.13 | 0.53 | 0.41 | 0.63 | 10 tissues | CRVX | CEBPB,JUND | 6 altered motifs | RP11-136O12.2 | ||||||
| 8 | 125525328 | 1 | 1 | rs4871611 | G | A | 0.13 | 0.53 | 0.36 | 0.63 | CRVX | 11 tissues | 11 tissues | 4 bound proteins | GR | 1 hit | RP11-136O12.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 65427230 | 1 | 1 | rs268124 | C | T | 0.41 | 0.77 | 0.82 | 0.72 | 9 tissues | Myc,Pax-4 | 1 hit | SPRED2 | intronic | ||||||
| 2 | 65440138 | 1 | 1 | rs6740462 | C | A | 0.91 | 0.80 | 0.82 | 0.72 | ESDR | 5 tissues | USF1 | 4 altered motifs | 1 hit | 2207 hits | AC074391.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 105987150 | 1 | 1 | rs6568421 | A | G | 0.17 | 0.19 | 0.00 | 0.29 | 6 tissues | 5 tissues | Nkx2 | 2 hits | 82kb 3' of 7SK | ||||||
| 6 | 105987394 | 1 | 1 | rs7746082 | G | C | 0.01 | 0.18 | 0.00 | 0.29 | 5 tissues | MUS,MUS,SKIN | Cphx,HNF4 | 1 hit | 272 hits | 83kb 3' of 7SK |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 32405455 | 1 | 1 | rs10947261 | G | T | 0.11 | 0.15 | 0.30 | 0.10 | Foxm1,Irf,TCF11::MafG | 1 hit | 7 hits | 5 hits | BTNL2 | intronic | |||||
| 6 | 32405535 | 1 | 1 | rs10947262 | C | T | 0.14 | 0.16 | 0.30 | 0.10 | PLZF | 1 hit | 4 hits | BTNL2 | intronic | ||||||
| 6 | 32405597 | 1 | 1 | rs10947263 | C | T | 0.14 | 0.16 | 0.30 | 0.10 | Ncx,p300 | 3 hits | BTNL2 | intronic | |||||||
| 6 | 32405752 | 1 | 1 | rs10947264 | A | G | 0.14 | 0.16 | 0.30 | 0.10 | 9 altered motifs | 3 hits | BTNL2 | intronic | |||||||
| 6 | 32405799 | 1 | 1 | rs201879185 | TA | T | 0.14 | 0.16 | 0.30 | 0.10 | 15 altered motifs | 4 hits | BTNL2 | intronic | |||||||
| 6 | 32406383 | 1 | 1 | rs62404577 | A | G | 0.14 | 0.16 | 0.30 | 0.10 | SKIN, HRT | IPSC | TBP | BCL,Pax-5 | 3 hits | BTNL2 | intronic | ||||
| 6 | 32406414 | 1 | 1 | rs77331864 | G | A | 0.13 | 0.16 | 0.30 | 0.10 | SKIN, HRT | IPSC | TBP | 3 hits | BTNL2 | intronic | |||||
| 6 | 32406428 | 1 | 1 | rs73400890 | G | A | 0.14 | 0.16 | 0.30 | 0.10 | HRT | TBP | 9 altered motifs | 3 hits | BTNL2 | intronic | |||||
| 6 | 32406485 | 1 | 1 | rs73400892 | G | A | 0.14 | 0.16 | 0.21 | 0.10 | HRT | TBP | 4 altered motifs | 3 hits | BTNL2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 173852805 | 1 | 1 | rs359456 | T | C | 0.67 | 0.47 | 0.38 | 0.58 | BLD | 5 tissues | MZF1::1-4,RXRA | 2 hits | 3 hits | 35kb 5' of CPEB4 | |||||
| 5 | 173852839 | 1 | 1 | rs359457 | C | T | 0.67 | 0.47 | 0.38 | 0.58 | BLD | 5 tissues | Ets | 1 hit | 8 hits | 3 hits | 35kb 5' of CPEB4 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 166990699 | 1 | 1 | rs932644 | A | C | 0.24 | 0.43 | 0.39 | 0.48 | BLD | BLD | CTCF,TAL1,TCF12 | 19 hits | RP1-167A14.2 | ||||||
| 6 | 166990944 | 1 | 1 | rs10946198 | C | T | 0.24 | 0.43 | 0.39 | 0.48 | 17 hits | RP1-167A14.2 | |||||||||
| 6 | 166991004 | 1 | 1 | rs10946199 | G | A | 0.23 | 0.42 | 0.39 | 0.48 | 4 altered motifs | 17 hits | RP1-167A14.2 | ||||||||
| 6 | 166991118 | 1 | 1 | rs1743440 | G | A | 0.24 | 0.43 | 0.39 | 0.48 | 5 altered motifs | 17 hits | RP1-167A14.2 | ||||||||
| 6 | 166991263 | 1 | 1 | rs1794694 | T | C | 0.24 | 0.43 | 0.39 | 0.48 | SETDB1,TCF12,Znf143 | 17 hits | RP1-167A14.2 | ||||||||
| 6 | 166991585 | 1 | 1 | rs430097 | A | G | 0.24 | 0.43 | 0.39 | 0.48 | BLD | 19 hits | RP1-167A14.2 | ||||||||
| 6 | 166991738 | 1 | 1 | rs409356 | T | A | 0.24 | 0.43 | 0.39 | 0.48 | 6 tissues | 17 hits | RP1-167A14.2 | ||||||||
| 6 | 166991947 | 1 | 1 | rs447042 | C | T | 0.24 | 0.43 | 0.39 | 0.48 | 17 hits | RP1-167A14.2 | |||||||||
| 6 | 166992065 | 1 | 1 | rs402191 | T | C | 0.24 | 0.43 | 0.39 | 0.48 | 19 hits | RP1-167A14.2 | |||||||||
| 6 | 166992182 | 1 | 1 | rs1794693 | T | C | 0.24 | 0.43 | 0.39 | 0.48 | 4 altered motifs | 17 hits | RP1-167A14.2 | ||||||||
| 6 | 166992721 | 1 | 1 | rs422780 | A | G | 0.24 | 0.43 | 0.39 | 0.48 | ESC | MAFK | 6 altered motifs | 19 hits | RP1-167A14.2 | ||||||
| 6 | 166992750 | 1 | 1 | rs400176 | T | C | 0.24 | 0.43 | 0.39 | 0.48 | ESC | MAFK | 19 hits | RP1-167A14.2 | |||||||
| 6 | 166992830 | 1 | 1 | rs422562 | A | G | 0.24 | 0.43 | 0.39 | 0.48 | ESC | MAFK | CCNT2,GATA,TAL1 | 12 hits | 19 hits | RP1-167A14.2 | |||||
| 6 | 166993056 | 1 | 1 | rs416131 | G | T | 0.24 | 0.43 | 0.39 | 0.48 | 7 altered motifs | 1 hit | 19 hits | RP1-167A14.2 | |||||||
| 6 | 166993145 | 1 | 1 | rs415890 | G | C | 0.24 | 0.43 | 0.39 | 0.48 | 1 hit | 3 hits | 19 hits | RP1-167A14.2 | |||||||
| 6 | 166993193 | 1 | 1 | rs415842 | G | A | 0.24 | 0.43 | 0.39 | 0.48 | Foxp1 | 19 hits | RP1-167A14.2 | ||||||||
| 6 | 166994056 | 1 | 1 | rs407515 | G | C | 0.24 | 0.43 | 0.39 | 0.48 | 19 hits | RP1-167A14.2 | |||||||||
| 6 | 166995599 | 1 | 1 | rs406095 | C | T | 0.24 | 0.43 | 0.39 | 0.48 | 6 altered motifs | 17 hits | RP1-167A14.2 | ||||||||
| 6 | 166995886 | 1 | 1 | rs4710161 | T | C | 0.25 | 0.43 | 0.38 | 0.48 | 4 altered motifs | 17 hits | RP1-167A14.2 | ||||||||
| 6 | 166996074 | 1 | 1 | rs388406 | A | G | 0.24 | 0.42 | 0.39 | 0.48 | BLD, LIV | BLD | 4 altered motifs | 17 hits | RP1-167A14.2 | ||||||
| 6 | 166996150 | 1 | 1 | rs377232 | C | A | 0.34 | 0.43 | 0.39 | 0.48 | BLD, LIV | BLD | GATA,Irf | 18 hits | RP1-167A14.2 | ||||||
| 6 | 166996283 | 1 | 1 | rs387733 | A | G | 0.24 | 0.42 | 0.39 | 0.48 | BLD, LIV | BLD | CEBPA,Maf,TATA | 3 hits | 17 hits | RP1-167A14.2 | |||||
| 6 | 166996881 | 1 | 1 | rs430145 | C | T | 0.24 | 0.43 | 0.39 | 0.48 | 5 tissues | ESDR | 6 altered motifs | 17 hits | RP1-167A14.2 | ||||||
| 6 | 166997390 | 1 | 1 | rs376097 | A | G | 0.24 | 0.42 | 0.38 | 0.48 | 7 tissues | 13 tissues | LIV | Maf,Pax-4 | 17 hits | RP1-167A14.2 | |||||
| 6 | 166997419 | 1 | 1 | rs424185 | C | T | 0.24 | 0.42 | 0.38 | 0.48 | 7 tissues | 13 tissues | LIV | CEBPB,HNF4A | Nanog | 19 hits | RP1-167A14.2 | ||||
| 6 | 166997520 | 1 | 1 | rs400837 | T | C | 0.24 | 0.43 | 0.39 | 0.48 | 17 tissues | 16 tissues | 4 tissues | 4 bound proteins | Foxa,Foxp1,RREB-1 | 3 hits | 20 hits | RP1-167A14.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 20 | 46111557 | 1 | 1 | rs6074022 | C | T | 0.97 | 0.73 | 0.58 | 0.74 | FAT, BLD, SKIN | 5 tissues | 17 tissues | 6 bound proteins | CHD2,Nrf-2 | 2 hits | 1257 hits | 10 hits | 6.7kb 5' of CD40 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 67215986 | 1 | 1 | rs7517847 | T | G | 0.20 | 0.56 | 0.45 | 0.43 | 4 altered motifs | 2 hits | 3 hits | IL23R | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 130768383 | 1 | 1 | rs10051722 | A | C | 0.37 | 0.43 | 0.39 | 0.32 | Foxd3,Foxp1 | 287 hits | 382kb 5' of RNU7-53P |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 56141024 | 1 | 1 | rs6873385 | T | A | 0.20 | 0.15 | 0.02 | 0.23 | 4 tissues | ANKRD55 | intronic | ||||||||
| 5 | 56143024 | 1 | 1 | rs10065637 | C | T | 0.03 | 0.14 | 0.02 | 0.23 | 4 tissues | EBF1,NFKB,PU1 | Maf,Pou5f1 | 1 hit | 104 hits | 3 hits | ANKRD55 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 21430497 | 1 | 1 | rs12663356 | T | C | 0.56 | 0.52 | 0.34 | 0.53 | AIRE,Hmbox1,TATA | 1 hit | 342 hits | 75kb 3' of RP1-135L22.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 20728500 | 1 | 1 | rs6908425 | T | C | 0.77 | 0.79 | 0.79 | 0.78 | ESC, IPSC | 4 altered motifs | 2 hits | CDKAL1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 15 | 38554821 | 1 | 1 | rs72727394 | C | T | 0.08 | 0.22 | 0.11 | 0.19 | BLD | 6 tissues | BLD,BLD,BLD | Mxi1,Myc,RFX5 | 27 hits | RASGRP1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 14 | 87998543 | 1 | 1 | rs10220572 | C | G | 0.41 | 0.17 | 0.19 | 0.09 | GI,BLD,BLD | HNF4,Hdx | 1 hit | 2.1kb 5' of U6 | |||||||
| 14 | 88000797 | 1 | 1 | rs8006352 | G | T | 0.41 | 0.17 | 0.19 | 0.09 | BLD | 6 altered motifs | 1 hit | 4.3kb 5' of GPR65 | |||||||
| 14 | 88001228 | 1 | 1 | rs8007233 | G | A | 0.41 | 0.17 | 0.19 | 0.09 | BLD | DMRT1 | 1 hit | 3.9kb 5' of GPR65 | |||||||
| 14 | 88004037 | 1 | 1 | rs73312867 | A | C | 0.18 | 0.12 | 0.19 | 0.09 | BLD | BLD | BLD | 9 altered motifs | 1.1kb 5' of GPR65 | ||||||
| 14 | 88004797 | 1 | 1 | rs28667727 | T | C | 0.41 | 0.17 | 0.19 | 0.09 | BLD, GI | BLD, THYM | BLD,BLD | 5 altered motifs | 1 hit | 326bp 5' of GPR65 | |||||
| 14 | 88006251 | 1 | 1 | rs8005161 | C | T | 0.41 | 0.17 | 0.19 | 0.09 | 6 tissues | BLD, GI | 9 tissues | 4 bound proteins | 2 hits | 119 hits | 3 hits | GPR65 | intronic | ||
| 14 | 88009435 | 1 | 1 | rs72160890 | 12-mer | T | 0.41 | 0.17 | 0.19 | 0.09 | BLD | BLD, THYM | BLD | LUN-1,Pou3f1 | 1 hit | GPR65 | intronic | ||||
| 14 | 88011538 | 1 | 1 | rs3742704 | A | C | 0.18 | 0.13 | 0.19 | 0.09 | BLD | 4 tissues | Pax-4 | 1 hit | 2 hits | RP11-300J18.2 | missense | ||||
| 14 | 88012483 | 1 | 1 | rs12434101 | T | C | 0.20 | 0.13 | 0.19 | 0.09 | BLD | LNG | RP11-300J18.2 | 3'-UTR | |||||||
| 14 | 88022477 | 1 | 1 | rs11624293 | T | C | 0.20 | 0.13 | 0.19 | 0.09 | HRT, LIV | PRDM1,Zbtb3 | 2 hits | RP11-300J18.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 32619077 | 1 | 1 | rs9271366 | G | A | 0.83 | 0.92 | 0.84 | 0.87 | Nanog | 6 hits | 122 hits | 261 hits | 9.1kb 5' of HLA-DQA1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 67209833 | 1 | 1 | rs11805303 | C | T | 0.29 | 0.19 | 0.51 | 0.30 | BLD | PANC | Bcl6b,ELF1 | 1 hit | 1 hit | IL23R | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 22 | 21570728 | 1 | 1 | rs2256609 | A | G | 0.04 | 0.31 | 0.40 | 0.19 | FAT, BLD | 19 tissues | BLD,BLD | 4 altered motifs | 19 hits | UBE2L3 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 73245771 | 1 | 1 | rs6452898 | A | C | 0.50 | 0.34 | 0.16 | 0.37 | ESDR, ESC | GATA,Pbx-1 | RP11-60A8.1 | ||||||||
| 5 | 73245860 | 1 | 1 | rs6452899 | G | A | 0.50 | 0.33 | 0.16 | 0.37 | ESDR, ESC, IPSC | 5 altered motifs | RP11-60A8.1 | ||||||||
| 5 | 73246223 | 1 | 1 | rs12513457 | C | A | 0.48 | 0.34 | 0.16 | 0.37 | 9 tissues | 6 tissues | 9 tissues | NRF1 | Irf,Klf7,Smad3 | RP11-60A8.1 | |||||
| 5 | 73247229 | 1 | 1 | rs9654420 | A | G | 0.49 | 0.34 | 0.16 | 0.37 | ESDR,VAS | HNF4 | RP11-60A8.1 | ||||||||
| 5 | 73247386 | 1 | 1 | rs9654421 | G | T | 0.49 | 0.34 | 0.16 | 0.37 | RP11-60A8.1 | ||||||||||
| 5 | 73248563 | 1 | 1 | rs9654415 | T | C | 0.57 | 0.35 | 0.16 | 0.37 | BCL,E2A,Hic1 | RP11-60A8.1 | |||||||||
| 5 | 73250082 | 1 | 1 | rs7341037 | T | C | 0.54 | 0.35 | 0.16 | 0.37 | GR,Ik-2,SIX5 | RP11-60A8.1 | |||||||||
| 5 | 73255307 | 1 | 1 | rs7702331 | A | G | 0.54 | 0.34 | 0.16 | 0.37 | FAT, SKIN | AP-1,DEC | 2 hits | 1 hit | RP11-60A8.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 19 | 48711017 | 1 | 1 | rs281379 | G | A | 0.22 | 0.33 | 0.01 | 0.45 | ADRL,MUS | Bach1,Pax-2,Smad3 | 2 hits | 3 hits | 25 hits | 2kb 3' of MAMSTR |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 142114049 | 1 | 1 | rs4912804 | T | C | 0.78 | 0.65 | 0.66 | 0.61 | ESC, BLD, MUS | 9 altered motifs | 4 hits | NDFIP1 | intronic | ||||||
| 5 | 142114120 | 1 | 1 | rs4912805 | A | G | 0.79 | 0.65 | 0.66 | 0.61 | ESC, BLD, MUS | 4 altered motifs | 5 hits | NDFIP1 | intronic | ||||||
| 5 | 142115154 | 1 | 1 | rs13184323 | T | G | 0.79 | 0.65 | 0.66 | 0.61 | 6 tissues | DMRT1,HDAC2 | 5 hits | NDFIP1 | intronic | ||||||
| 5 | 142115574 | 1 | 1 | rs13188700 | T | C | 0.77 | 0.65 | 0.65 | 0.61 | 8 tissues | 12 altered motifs | 5 hits | NDFIP1 | intronic | ||||||
| 5 | 142116150 | 1 | 1 | rs10875596 | T | C | 0.79 | 0.65 | 0.65 | 0.61 | 15 tissues | STAT3,ZNF263 | GATA,Irf | 9 hits | NDFIP1 | intronic | |||||
| 5 | 142116899 | 1 | 1 | rs7712237 | T | C | 0.78 | 0.65 | 0.65 | 0.61 | BLD | 6 tissues | Mef2 | 5 hits | NDFIP1 | intronic | |||||
| 5 | 142118085 | 1 | 1 | rs9324866 | A | G | 0.78 | 0.65 | 0.65 | 0.61 | GI | 11 tissues | LNG | 8 hits | NDFIP1 | intronic | |||||
| 5 | 142119067 | 1 | 1 | rs1036209 | T | A | 0.78 | 0.65 | 0.65 | 0.61 | BLD | Fox,HNF1 | 5 hits | NDFIP1 | intronic | ||||||
| 5 | 142119476 | 1 | 1 | rs1036207 | A | G | 0.78 | 0.65 | 0.65 | 0.61 | BLD | Cdx2 | 5 hits | NDFIP1 | intronic | ||||||
| 5 | 142120871 | 1 | 1 | rs11749731 | A | C | 0.78 | 0.65 | 0.66 | 0.61 | BLD | 12 tissues | BLD | 12 altered motifs | 1 hit | 8 hits | NDFIP1 | intronic | |||
| 5 | 142121139 | 1 | 1 | rs11750521 | T | C | 0.79 | 0.65 | 0.66 | 0.61 | BLD | 7 tissues | 24 altered motifs | 5 hits | NDFIP1 | intronic | |||||
| 5 | 142121943 | 1 | 1 | rs1835966 | C | T | 0.79 | 0.65 | 0.65 | 0.61 | 9 tissues | Zbtb3 | 8 hits | NDFIP1 | intronic | ||||||
| 5 | 142122206 | 1 | 1 | rs1835965 | G | A | 0.79 | 0.65 | 0.65 | 0.61 | 8 tissues | SKIN | Pax-6,ZNF263 | 5 hits | NDFIP1 | intronic | |||||
| 5 | 142122470 | 1 | 1 | rs10463348 | G | T | 0.79 | 0.65 | 0.65 | 0.61 | Cdx,Foxa,SRF | 5 hits | NDFIP1 | intronic | |||||||
| 5 | 142124274 | 1 | 1 | rs6877864 | A | G | 0.79 | 0.65 | 0.65 | 0.61 | 6 tissues | SKIN | GATA1 | 5 altered motifs | 5 hits | NDFIP1 | intronic | ||||
| 5 | 142124305 | 1 | 1 | rs6882226 | T | A | 0.79 | 0.65 | 0.65 | 0.61 | 6 tissues | SKIN | GATA1 | 7 altered motifs | 5 hits | NDFIP1 | intronic | ||||
| 5 | 142125426 | 1 | 1 | rs6883827 | A | G | 0.79 | 0.65 | 0.66 | 0.61 | BLD | Evi-1,Rad21 | 5 hits | NDFIP1 | intronic | ||||||
| 5 | 142125897 | 1 | 1 | rs4912623 | T | A | 0.78 | 0.65 | 0.66 | 0.61 | BLD | Foxk1,Pou2f2,Sox | 6 hits | NDFIP1 | intronic | ||||||
| 5 | 142127050 | 1 | 1 | rs7737631 | T | G | 0.78 | 0.65 | 0.67 | 0.61 | BLD, LIV | 4 hits | NDFIP1 | intronic | |||||||
| 5 | 142127346 | 1 | 1 | rs6874308 | C | T | 0.79 | 0.65 | 0.65 | 0.61 | 4 tissues | GI | 6 altered motifs | 5 hits | NDFIP1 | intronic | |||||
| 5 | 142128923 | 1 | 1 | rs11739961 | T | G | 0.79 | 0.65 | 0.65 | 0.61 | BLD | 15 tissues | BLD,BLD,BLD | Mxi1,RFX5 | 8 hits | NDFIP1 | intronic | ||||
| 5 | 142129868 | 1 | 1 | rs2338821 | A | G | 0.79 | 0.65 | 0.66 | 0.61 | FAT, SKIN | BLD, LIV, MUS | YY1 | 6 hits | NDFIP1 | intronic | |||||
| 5 | 142129972 | 1 | 1 | rs4391200 | A | G | 0.79 | 0.65 | 0.66 | 0.61 | FAT, SKIN | BLD, LIV, MUS | Zfp187 | 5 hits | NDFIP1 | intronic | |||||
| 5 | 142130032 | 1 | 1 | rs10062349 | G | A | 0.79 | 0.65 | 0.66 | 0.61 | DMRT7,Mef2,Pax-4 | 5 hits | NDFIP1 | intronic | |||||||
| 5 | 142130420 | 1 | 1 | rs6860138 | G | A | 0.79 | 0.65 | 0.66 | 0.61 | FAT | BLD, FAT, LIV | BLD | 4 altered motifs | 8 hits | NDFIP1 | intronic | ||||
| 5 | 142130883 | 1 | 1 | rs6580228 | C | T | 0.79 | 0.65 | 0.66 | 0.61 | BLD | Sox | 5 hits | NDFIP1 | intronic | ||||||
| 5 | 142131189 | 1 | 1 | rs6580229 | A | G | 0.79 | 0.65 | 0.66 | 0.61 | BLD | Nr2f2,Pax-2 | 5 hits | NDFIP1 | intronic | ||||||
| 5 | 142133639 | 1 | 1 | rs6863411 | A | T | 0.79 | 0.65 | 0.66 | 0.61 | BLD | BLD, LIV, GI | GI | FOXA1,FOXA2,HNF4A | Crx,Gfi1 | 1 hit | 141 hits | 13 hits | NDFIP1 | intronic | |
| 5 | 142134126 | 1 | 1 | rs2043280 | C | G | 0.79 | 0.65 | 0.66 | 0.61 | BLD | BLD, LIV, GI | Gcm1,Mef2 | 8 hits | NDFIP1 | intronic | |||||
| 5 | 142134289 | 1 | 1 | rs7709361 | T | C | 0.79 | 0.65 | 0.66 | 0.61 | BLD | BLD, LIV | RXRA | 1 hit | 8 hits | NDFIP1 | intronic | ||||
| 5 | 142134401 | 1 | 1 | rs7723666 | C | T | 0.79 | 0.65 | 0.66 | 0.61 | BLD | BLD, LIV | Maf,Pou1f1 | 8 hits | NDFIP1 | intronic | |||||
| 5 | 142135999 | 1 | 1 | rs7733850 | C | T | 0.79 | 0.65 | 0.65 | 0.61 | BLD | Foxp1,GATA,Nanog | 8 hits | NDFIP1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 22 | 30196498 | 1 | 1 | rs713875 | C | G | 0.35 | 0.44 | 0.66 | 0.55 | 16 tissues | 19 tissues | 49 tissues | 7 bound proteins | 5 altered motifs | 1 hit | 2 hits | 10 hits | RP3-438O4.4 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 17 | 42362183 | 1 | 1 | rs744166 | A | G | 0.68 | 0.31 | 0.38 | 0.43 | MUS, GI | 24 tissues | 4 tissues | USF1,MAX,MXI1 | PLZF | 2 hits | 8 hits | 6 hits | STAT3 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 166957483 | 1 | 1 | rs2149083 | G | C | 0.76 | 0.57 | 0.61 | 0.52 | 21 tissues | 6 tissues | 37 tissues | 11 bound proteins | 21 altered motifs | 17 hits | 291bp 5' of RNASET2 | ||||
| 6 | 166957622 | 1 | 1 | rs2149085 | T | C | 0.76 | 0.57 | 0.61 | 0.52 | 16 tissues | 15 tissues | 25 tissues | POL2,FOXA2,HEY1 | 1 hit | 19 hits | 430bp 5' of RNASET2 | ||||
| 6 | 166958249 | 1 | 1 | rs2769347 | T | A | 0.76 | 0.57 | 0.61 | 0.52 | BLD, LIV | 8 tissues | 6 tissues | HEY1,TCF4 | 4 altered motifs | 17 hits | 1.1kb 5' of RNASET2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 19 | 1124836 | 1 | 1 | rs740495 | A | G | 0.66 | 0.37 | 0.32 | 0.25 | 7 tissues | MUS,OVRY,MUS | 7 altered motifs | 1 hit | 3 hits | SBNO2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 7 | 50264865 | 1 | 1 | rs1456896 | C | T | 0.58 | 0.72 | 0.42 | 0.68 | BLD | BLD, THYM | 5 tissues | HNF4 | 2 hits | 321 hits | 9.9kb 3' of AC020743.4 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 21 | 15440233 | 1 | 1 | rs1736020 | C | A | 0.09 | 0.40 | 0.19 | 0.40 | BLD | 7 tissues | BLD,MUS | 4 altered motifs | 1 hit | 5 hits | 38kb 5' of AJ006998.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 19 | 46346549 | 1 | 1 | rs4802307 | G | T | 0.03 | 0.24 | 0.04 | 0.29 | 24 tissues | BRST | 40 tissues | CEBPB,POL2 | HNF4 | 1 hit | 263 hits | 7 hits | 444bp 5' of PPP5C |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 173899711 | 1 | 1 | rs72810989 | A | G | 0.04 | 0.17 | 0.07 | 0.31 | BRN, HRT | 11 tissues | 4 altered motifs | 3 hits | CPEB4 | intronic | |||||
| 5 | 173899888 | 1 | 1 | rs17694791 | C | T | 0.04 | 0.17 | 0.07 | 0.31 | BRN | 15 tissues | SETDB1 | 3 hits | CPEB4 | intronic | |||||
| 5 | 173901021 | 1 | 1 | rs17694835 | G | T | 0.04 | 0.17 | 0.07 | 0.31 | HRT | 8 tissues | Arid5a,Foxa,STAT | 3 hits | CPEB4 | intronic | |||||
| 5 | 173904848 | 1 | 1 | rs72810995 | A | G | 0.04 | 0.17 | 0.07 | 0.31 | BLD, SKIN, BRN | Mxi1,Pitx2 | 3 hits | CPEB4 | intronic | ||||||
| 5 | 173907216 | 1 | 1 | rs75049939 | T | G | 0.04 | 0.17 | 0.07 | 0.31 | BLD | 10 tissues | 4 altered motifs | 3 hits | CPEB4 | intronic | |||||
| 5 | 173910850 | 1 | 1 | rs17695092 | T | G | 0.04 | 0.17 | 0.07 | 0.31 | STRM, BRN, HRT | 13 altered motifs | 1 hit | 8 hits | 8 hits | CPEB4 | intronic | ||||
| 5 | 173912219 | 1 | 1 | rs7736263 | G | T | 0.04 | 0.17 | 0.07 | 0.31 | 11 tissues | Zic | 11 hits | 13 hits | CPEB4 | intronic | |||||
| 5 | 173913493 | 1 | 1 | rs72812804 | T | G | 0.04 | 0.17 | 0.07 | 0.31 | 9 tissues | 5 altered motifs | 3 hits | CPEB4 | intronic | ||||||
| 5 | 173917150 | 1 | 1 | rs72812805 | T | C | 0.04 | 0.17 | 0.07 | 0.31 | MUS, BLD | 9 tissues | 5 altered motifs | 3 hits | CPEB4 | intronic | |||||
| 5 | 173918020 | 1 | 1 | rs55946741 | A | G | 0.04 | 0.17 | 0.07 | 0.31 | 22 tissues | PANC | 52 tissues | 12 bound proteins | Irf | 3 hits | CPEB4 | intronic | |||
| 5 | 173921153 | 1 | 1 | rs10516107 | G | A | 0.04 | 0.17 | 0.07 | 0.31 | 6 tissues | 4 altered motifs | 5 hits | 8 hits | CPEB4 | intronic | |||||
| 5 | 173922837 | 1 | 1 | rs1484803 | A | G | 0.04 | 0.17 | 0.07 | 0.31 | 15 tissues | BLD,SKIN,HRT | 6 altered motifs | 9 hits | 8 hits | CPEB4 | intronic | ||||
| 5 | 173923402 | 1 | 1 | rs966544 | A | G | 0.04 | 0.17 | 0.07 | 0.31 | HRT | 19 tissues | HRT,BLD,BLD | EBF1 | AP-1,BATF | 9 hits | 8 hits | CPEB4 | intronic | ||
| 5 | 173923987 | 1 | 1 | rs72812811 | G | A | 0.04 | 0.17 | 0.07 | 0.31 | BLD, VAS, BONE | 19 tissues | 14 tissues | 5 altered motifs | 3 hits | CPEB4 | intronic | ||||
| 5 | 173924078 | 1 | 1 | rs17695555 | C | T | 0.04 | 0.17 | 0.07 | 0.31 | 5 tissues | 19 tissues | 7 tissues | 3 hits | CPEB4 | intronic | |||||
| 5 | 173926511 | 1 | 1 | rs747472 | T | C | 0.04 | 0.17 | 0.07 | 0.31 | STRM, BRN | 15 tissues | 15 tissues | 4 bound proteins | 13 hits | 8 hits | CPEB4 | intronic | |||
| 5 | 173930203 | 1 | 1 | rs113932433 | G | A | 0.04 | 0.17 | 0.07 | 0.31 | 7 tissues | 3 hits | CPEB4 | intronic | |||||||
| 5 | 173930807 | 1 | 1 | rs56281418 | T | C | 0.04 | 0.17 | 0.07 | 0.31 | 4 tissues | 3 hits | CPEB4 | intronic | |||||||
| 5 | 173931334 | 1 | 1 | rs7705507 | C | T | 0.06 | 0.17 | 0.07 | 0.31 | 8 tissues | 4 altered motifs | 3 hits | CPEB4 | intronic | ||||||
| 5 | 173935455 | 1 | 1 | rs6861681 | G | A | 0.04 | 0.17 | 0.07 | 0.31 | LNG | 5 tissues | HP1-site-factor,Hlx1,Pou6f1 | 1 hit | 6 hits | 8 hits | CPEB4 | intronic | |||
| 5 | 173935723 | 1 | 1 | rs72812826 | C | T | 0.04 | 0.17 | 0.07 | 0.31 | LNG | 4 tissues | 7 altered motifs | 3 hits | CPEB4 | intronic | |||||
| 5 | 173938307 | 1 | 1 | rs56245789 | T | C | 0.04 | 0.17 | 0.07 | 0.31 | BLD | ERalpha-a,GATA,Zbtb3 | 3 hits | CPEB4 | intronic | ||||||
| 5 | 173940583 | 1 | 1 | rs56184817 | T | C | 0.04 | 0.17 | 0.07 | 0.31 | LNG, BLD | 8 tissues | LNG | 4 altered motifs | 3 hits | CPEB4 | intronic | ||||
| 5 | 173945622 | 1 | 1 | rs72812832 | G | A | 0.04 | 0.17 | 0.07 | 0.31 | 7 tissues | 7 altered motifs | 3 hits | CPEB4 | intronic | ||||||
| 5 | 173946140 | 1 | 1 | rs17696147 | T | C | 0.04 | 0.17 | 0.07 | 0.31 | 5 tissues | 3 hits | CPEB4 | intronic | |||||||
| 5 | 173946945 | 1 | 1 | rs56163845 | A | G | 0.04 | 0.17 | 0.07 | 0.31 | GI, PANC, LIV | GI | Myc,RXRA | 3 hits | CPEB4 | intronic | |||||
| 5 | 173947757 | 1 | 1 | rs72812842 | C | T | 0.04 | 0.17 | 0.07 | 0.31 | GI, LIV | CEBPB,CEBPG,p300 | 3 hits | CPEB4 | intronic | ||||||
| 5 | 173948254 | 1 | 1 | rs55924019 | A | G | 0.04 | 0.17 | 0.07 | 0.31 | GI | Hbp1 | 3 hits | CPEB4 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 200966738 | 1 | 1 | rs11584383 | T | C | 0.16 | 0.20 | 0.01 | 0.28 | BDP1,Nkx2 | 2 hits | 1 hit | 10 hits | 2.7kb 3' of KIF21B |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 32691666 | 1 | 1 | rs140068907 | A | C | 0.00 | 0.01 | 0.07 | 0.00 | BLD | 4 altered motifs | 23kb 5' of HLA-DQB1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 4 | 38333446 | 1 | 1 | rs73243351 | G | A | 0.33 | 0.07 | 0.20 | 0.08 | BLD, FAT | 6 tissues | PU1,STAT3 | STAT | 33kb 5' of RP11-83C7.1 | ||||||
| 4 | 38334202 | 1 | 1 | rs1487630 | C | T | 0.30 | 0.07 | 0.25 | 0.08 | BLD | Arid5b,TATA,TCF12 | 1 hit | 33kb 5' of RP11-83C7.1 | |||||||
| 4 | 38338386 | 1 | 1 | rs143415392 | AC | A | 0.30 | 0.07 | 0.27 | 0.08 | 15 altered motifs | 29kb 5' of RP11-83C7.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 11 | 61790331 | 1 | 1 | rs102275 | T | C | 0.63 | 0.63 | 0.41 | 0.37 | 11 hits | 156 hits | 41 hits | C11orf10 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 7 | 26846266 | 1 | 1 | rs10270187 | C | G | 0.14 | 0.20 | 0.11 | 0.22 | 4 altered motifs | 13 hits | SKAP2 | intronic | |||||||
| 7 | 26846849 | 1 | 1 | rs10251839 | C | T | 0.14 | 0.20 | 0.11 | 0.22 | Myf | 11 hits | SKAP2 | intronic | |||||||
| 7 | 26847996 | 1 | 1 | rs3801812 | C | T | 0.14 | 0.20 | 0.11 | 0.22 | Pax-4 | 13 hits | SKAP2 | intronic | |||||||
| 7 | 26848323 | 1 | 1 | rs10272190 | T | A | 0.14 | 0.20 | 0.11 | 0.22 | 4 altered motifs | 13 hits | SKAP2 | intronic | |||||||
| 7 | 26848510 | 1 | 1 | rs66552416 | TC | T | 0.15 | 0.20 | 0.11 | 0.22 | Pou6f1,TEF | 11 hits | SKAP2 | intronic | |||||||
| 7 | 26848536 | 1 | 1 | rs10272457 | T | C | 0.14 | 0.20 | 0.11 | 0.22 | 8 altered motifs | 13 hits | SKAP2 | intronic | |||||||
| 7 | 26848658 | 1 | 1 | rs10272603 | T | C | 0.14 | 0.20 | 0.11 | 0.22 | RXRA | 11 hits | SKAP2 | intronic | |||||||
| 7 | 26849299 | 1 | 1 | rs6461979 | T | C | 0.01 | 0.19 | 0.11 | 0.22 | 5 altered motifs | 14 hits | SKAP2 | intronic | |||||||
| 7 | 26850243 | 1 | 1 | rs17376018 | A | G | 0.18 | 0.20 | 0.11 | 0.22 | 5 tissues | SKIN,BLD | CEBPB,p300 | 11 hits | SKAP2 | intronic | |||||
| 7 | 26850827 | 1 | 1 | rs4722647 | G | C | 0.15 | 0.19 | 0.11 | 0.22 | FAT, BLD, SKIN | BLD | CHD2,Pax-4 | 11 hits | SKAP2 | intronic | |||||
| 7 | 26850953 | 1 | 1 | rs3934268 | G | C | 0.15 | 0.20 | 0.11 | 0.22 | FAT, BLD, SKIN | 13 altered motifs | 11 hits | SKAP2 | intronic | ||||||
| 7 | 26851053 | 1 | 1 | rs2031811 | T | C | 0.15 | 0.20 | 0.11 | 0.22 | BLD, SKIN | 6 altered motifs | 14 hits | SKAP2 | intronic | ||||||
| 7 | 26851397 | 1 | 1 | rs2030136 | T | C | 0.15 | 0.20 | 0.10 | 0.22 | 4 altered motifs | 13 hits | SKAP2 | intronic | |||||||
| 7 | 26852046 | 1 | 1 | rs7804356 | T | C | 0.15 | 0.20 | 0.11 | 0.22 | GR | 1 hit | 3 hits | 14 hits | SKAP2 | intronic | |||||
| 7 | 26852706 | 1 | 1 | rs73069533 | G | A | 0.01 | 0.19 | 0.11 | 0.22 | Ik-2,Irf | 11 hits | SKAP2 | intronic | |||||||
| 7 | 26852821 | 1 | 1 | rs10486483 | G | A | 0.15 | 0.20 | 0.11 | 0.22 | 4 altered motifs | 1 hit | 225 hits | 14 hits | SKAP2 | intronic | |||||
| 7 | 26852912 | 1 | 1 | rs3801810 | G | A | 0.15 | 0.20 | 0.11 | 0.22 | 10 altered motifs | 14 hits | SKAP2 | intronic | |||||||
| 7 | 26853698 | 1 | 1 | rs3823928 | T | C | 0.15 | 0.20 | 0.11 | 0.22 | 4 tissues | ADRL | 5 altered motifs | 11 hits | SKAP2 | intronic | |||||
| 7 | 26853738 | 1 | 1 | rs7791513 | A | C | 0.15 | 0.20 | 0.11 | 0.22 | 4 tissues | BLD,ADRL | UF1H3BETA | 14 hits | SKAP2 | intronic | |||||
| 7 | 26853905 | 1 | 1 | rs3213853 | T | C | 0.15 | 0.20 | 0.11 | 0.22 | 7 tissues | 34 tissues | 5 bound proteins | 11 hits | SKAP2 | intronic | |||||
| 7 | 26854504 | 1 | 1 | rs6461980 | T | G | 0.15 | 0.20 | 0.11 | 0.22 | 6 tissues | LNG,MUS,BRST | Evi-1,GATA,IRC900814 | 11 hits | SKAP2 | intronic | |||||
| 7 | 26855241 | 1 | 1 | rs12536145 | A | T | 0.15 | 0.20 | 0.11 | 0.22 | BLD, BRST | 8 tissues | 10 tissues | Pou1f1,Pou3f3,TATA | 11 hits | SKAP2 | intronic | ||||
| 7 | 26855461 | 1 | 1 | rs10256250 | A | T | 0.15 | 0.20 | 0.11 | 0.22 | 11 tissues | AP-1 | 14 hits | SKAP2 | intronic | ||||||
| 7 | 26855837 | 1 | 1 | rs3801809 | G | A | 0.15 | 0.20 | 0.11 | 0.22 | 6 tissues | 5 tissues | 6 tissues | Ets,SIX5,YY1 | 11 hits | SKAP2 | intronic | ||||
| 7 | 26856193 | 1 | 1 | rs3839808 | TA | T | 0.15 | 0.20 | 0.11 | 0.22 | 7 tissues | 4 tissues | 4 tissues | 6 altered motifs | 10 hits | SKAP2 | intronic | ||||
| 7 | 26856936 | 1 | 1 | rs3801808 | T | A | 0.15 | 0.20 | 0.11 | 0.22 | 7 tissues | 7 tissues | 4 tissues | GATA | 14 hits | SKAP2 | intronic | ||||
| 7 | 26857820 | 1 | 1 | rs3801807 | T | C | 0.15 | 0.20 | 0.11 | 0.22 | 17 tissues | 10 tissues | 33 tissues | Pax-4,Zic | 2 hits | 14 hits | SKAP2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 17 | 42375526 | 1 | 1 | rs12942547 | A | G | 0.42 | 0.29 | 0.38 | 0.42 | BLD | BRST, BLD, BRN | 8 altered motifs | 1 hit | 340 hits | 1 hit | STAT3 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 28479196 | 1 | 1 | rs151181 | T | C | 0.15 | 0.40 | 0.13 | 0.35 | BLD | Pou1f1 | 1 hit | 9 hits | 182 hits | RP11-435I10.4 | intronic | ||||
| 16 | 28481189 | 1 | 1 | rs151303 | C | A | 0.12 | 0.39 | 0.12 | 0.35 | GI | GI | 4 tissues | Nr2f2 | 176 hits | RP11-435I10.4 | intronic | ||||
| 16 | 28484431 | 1 | 1 | rs151182 | C | T | 0.12 | 0.39 | 0.13 | 0.35 | 4 altered motifs | 176 hits | RP11-435I10.4 | intronic | |||||||
| 16 | 28485738 | 1 | 1 | rs151301 | T | A | 0.12 | 0.39 | 0.12 | 0.35 | BLD | CACD,PU.1 | 176 hits | RP11-435I10.4 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 159069404 | 1 | 1 | rs212388 | C | T | 0.32 | 0.45 | 0.37 | 0.58 | ESC, IPSC, BLD | IPSC, BLD, THYM | 5 tissues | MAX | Ik-1,MZF1::1-4,STAT | 3 hits | 379 hits | 1 hit | 4.1kb 5' of RP1-111C20.3 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 1 | rs77796963 | T | C | 0.48 | 0.65 | 0.81 | 0.72 | ESC, STRM | UBE3D | intronic | ||||||||||
| 6 | 82919099 | 1 | 1 | rs293496 | A | C | 0.48 | 0.65 | 0.81 | 0.72 | 12 altered motifs | 6 hits | UBE3D | intronic | |||||||
| 6 | 82922201 | 1 | 1 | rs293499 | T | G | 0.48 | 0.65 | 0.81 | 0.72 | STRM | MUS | BATF,DMRT5,Irf | 6 hits | UBE3D | intronic | |||||
| 6 | 82923092 | 1 | 1 | rs293501 | T | C | 0.47 | 0.65 | 0.81 | 0.72 | Pou1f1,TEF-1 | 6 hits | UBE3D | intronic | |||||||
| 6 | 82923946 | 1 | 1 | rs293503 | T | A | 0.48 | 0.65 | 0.81 | 0.72 | 10 altered motifs | 5 hits | UBE3D | intronic | |||||||
| 6 | 82924342 | 1 | 1 | rs2783159 | A | G | 0.48 | 0.65 | 0.81 | 0.72 | HP1-site-factor,RXRA,SIX5 | 5 hits | UBE3D | intronic | |||||||
| 6 | 82926518 | 1 | 1 | rs293505 | G | C | 0.48 | 0.65 | 0.81 | 0.72 | 5 hits | UBE3D | intronic | ||||||||
| 6 | 82929384 | 1 | 1 | rs293515 | G | A | 0.48 | 0.65 | 0.81 | 0.72 | 4 altered motifs | 5 hits | UBE3D | intronic | |||||||
| 6 | 82929657 | 1 | 1 | rs2770679 | T | C | 0.48 | 0.65 | 0.81 | 0.72 | 6 altered motifs | 5 hits | UBE3D | intronic | |||||||
| 6 | 82930250 | 1 | 1 | rs293514 | A | G | 0.48 | 0.65 | 0.81 | 0.72 | p53 | 5 hits | UBE3D | intronic | |||||||
| 6 | 82930874 | 1 | 1 | rs293512 | G | A | 0.48 | 0.65 | 0.81 | 0.72 | KAP1,SETDB1 | 8 altered motifs | 5 hits | UBE3D | intronic | ||||||
| 6 | 82932525 | 1 | 1 | rs293510 | C | T | 0.48 | 0.65 | 0.81 | 0.72 | SMC3 | 5 hits | UBE3D | intronic | |||||||
| 6 | 82932594 | 1 | 1 | rs293509 | T | C | 0.48 | 0.65 | 0.81 | 0.72 | Nanog | 5 hits | UBE3D | intronic | |||||||
| 6 | 82933352 | 1 | 1 | rs293508 | C | T | 0.48 | 0.65 | 0.81 | 0.72 | Cdx2,Mrg1::Hoxa9,NF-E2 | 5 hits | RP11-445L13__B.3 | intronic | |||||||
| 6 | 82935024 | 1 | 1 | rs2813803 | A | G | 0.48 | 0.65 | 0.81 | 0.72 | 5 hits | RP11-445L13__B.3 | intronic | ||||||||
| 6 | 82935343 | 1 | 1 | rs913577 | C | T | 0.48 | 0.65 | 0.81 | 0.72 | 4 altered motifs | 5 hits | RP11-445L13__B.3 | intronic | |||||||
| 6 | 82936164 | 1 | 1 | rs2783166 | A | G | 0.47 | 0.65 | 0.81 | 0.72 | Bcl6b | 5 hits | RP11-445L13__B.3 | intronic | |||||||
| 6 | 82936692 | 1 | 1 | rs293529 | T | A | 0.48 | 0.65 | 0.81 | 0.72 | 6 altered motifs | 5 hits | RP11-445L13__B.3 | intronic | |||||||
| 6 | 82937469 | 1 | 1 | rs293528 | C | A | 0.48 | 0.65 | 0.81 | 0.72 | 5 hits | RP11-445L13__B.3 | intronic | ||||||||
| 6 | 82938135 | 1 | 1 | rs293527 | C | T | 0.48 | 0.65 | 0.81 | 0.72 | 9 altered motifs | 5 hits | RP11-445L13__B.3 | intronic | |||||||
| 6 | 82938337 | 1 | 1 | rs293526 | C | T | 0.48 | 0.65 | 0.81 | 0.72 | GR | 5 hits | RP11-445L13__B.3 | intronic | |||||||
| 6 | 82939378 | 1 | 1 | rs293525 | C | T | 0.48 | 0.65 | 0.81 | 0.72 | Sox | 3 hits | 5 hits | UBE3D | intronic | ||||||
| 6 | 82940140 | 1 | 1 | rs293524 | G | T | 0.45 | 0.66 | 0.81 | 0.72 | STRM | 5 altered motifs | 6 hits | UBE3D | intronic | ||||||
| 6 | 82942022 | 1 | 1 | rs293522 | G | A | 0.43 | 0.65 | 0.81 | 0.72 | PTF1-beta,PU.1,TR4 | 6 hits | UBE3D | intronic | |||||||
| 6 | 82943278 | 1 | 1 | rs169789 | C | T | 0.47 | 0.65 | 0.81 | 0.72 | ERalpha-a,GATA | 5 hits | UBE3D | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 119908567 | 1 | 1 | rs3897478 | T | C | 0.39 | 0.12 | 0.03 | 0.11 | Maf | 1 hit | 6 hits | 687bp 3' of RP5-1042I8.7 | |||||||
| 1 | 119912687 | 1 | 1 | rs699779 | A | G | 0.40 | 0.12 | 0.03 | 0.11 | STRM | YY1 | 2 hits | 3 hits | NOTCH2 | 3'-UTR | |||||
| 1 | 119912963 | 1 | 1 | rs835576 | T | C | 0.40 | 0.12 | 0.03 | 0.11 | BRST, STRM | Pax-4 | 5 hits | NOTCH2 | 3'-UTR | ||||||
| 1 | 119913940 | 1 | 1 | rs835575 | G | T | 0.39 | 0.11 | 0.03 | 0.11 | BRST | 4 altered motifs | 2 hits | 6 hits | NOTCH2 | 3'-UTR | |||||
| 1 | 119915381 | 1 | 1 | rs6685892 | A | T | 0.39 | 0.11 | 0.03 | 0.11 | BRST | 10 altered motifs | 5 hits | NOTCH2 | synonymous | ||||||
| 1 | 119952883 | 1 | 1 | rs2934387 | T | C | 0.39 | 0.12 | 0.03 | 0.11 | LIV | 10 altered motifs | 6 hits | NOTCH2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 40437846 | 1 | 1 | rs9292777 | C | T | 0.67 | 0.51 | 0.15 | 0.58 | 14 tissues | 25 tissues | 6 bound proteins | 3 hits | 1 hit | 1 hit | 117kb 3' of AC108105.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 19 | 10359299 | 1 | 1 | rs12720356 | A | C | 0.01 | 0.05 | 0.00 | 0.10 | PLCNT | 2 hits | 5 hits | 8 hits | TYK2 | missense |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 4 | 48361228 | 1 | 1 | rs7438704 | A | G | 0.44 | 0.54 | 0.48 | 0.64 | 5 tissues | 15 tissues | 6 tissues | Foxa,GCNF,STAT | 228 hits | 3 hits | SLAIN2 | intronic | |||
| 4 | 48361966 | 1 | 1 | rs6837335 | A | G | 0.44 | 0.54 | 0.48 | 0.64 | 8 tissues | Hbp1,RORalpha1 | 1 hit | 3 hits | SLAIN2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 43579779 | 1 | 1 | rs10495903 | C | T | 0.17 | 0.10 | 0.01 | 0.11 | RFX5,SMC3 | 2 hits | 230 hits | 1 hit | THADA | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 11 | 61008737 | 1 | 1 | rs11230563 | C | T | 0.59 | 0.35 | 0.16 | 0.34 | ESC, IPSC, BRN | 12 tissues | 5 tissues | USF1 | E2A,Myf | 1 hit | 281 hits | 12 hits | CD6 | missense |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 144729300 | 1 | 1 | rs72852164 | A | G | 0.01 | 0.02 | 0.00 | 0.08 | INSM1,VDR | AC074093.1 | intronic | ||||||||
| 2 | 144729514 | 1 | 1 | rs113784023 | A | G | 0.01 | 0.02 | 0.00 | 0.08 | 6 altered motifs | AC074093.1 | intronic | ||||||||
| 2 | 144734276 | 1 | 1 | rs74754482 | G | A | 0.01 | 0.02 | 0.00 | 0.08 | 5 altered motifs | AC074093.1 | intronic | ||||||||
| 2 | 144734815 | 1 | 1 | rs11681525 | C | G | 0.01 | 0.02 | 0.00 | 0.08 | BLD,BLD | AC074093.1 | intronic | ||||||||
| 2 | 144735767 | 1 | 1 | rs74973835 | G | A | 0.00 | 0.02 | 0.00 | 0.08 | 8 altered motifs | AC074093.1 | intronic | ||||||||
| 2 | 144739319 | 1 | 1 | rs72852173 | A | G | 0.01 | 0.02 | 0.00 | 0.08 | AC074093.1 | intronic | |||||||||
| 2 | 144741289 | 1 | 1 | rs112386241 | T | C | 0.00 | 0.02 | 0.01 | 0.08 | 5 altered motifs | AC074093.1 | intronic | ||||||||
| 2 | 144742421 | 1 | 1 | rs111427713 | C | T | 0.01 | 0.02 | 0.00 | 0.08 | 5 altered motifs | AC074093.1 | intronic | ||||||||
| 2 | 144743679 | 1 | 1 | rs139331692 | CAG | C | 0.01 | 0.02 | 0.00 | 0.08 | DMRT5 | AC074093.1 | intronic | ||||||||
| 2 | 144744121 | 1 | 1 | rs72852183 | A | T | 0.01 | 0.02 | 0.00 | 0.08 | Gm397 | AC074093.1 | intronic | ||||||||
| 2 | 144748934 | 1 | 1 | rs72852199 | C | T | 0.00 | 0.02 | 0.00 | 0.08 | 4 altered motifs | AC074093.1 | intronic | ||||||||
| 2 | 144754098 | 1 | 1 | rs72853207 | T | C | 0.00 | 0.02 | 0.00 | 0.08 | DMRT2,Hoxd10,Sox | AC074093.1 | intronic | ||||||||
| 2 | 144755124 | 1 | 1 | rs72853210 | A | G | 0.00 | 0.02 | 0.00 | 0.08 | 5 altered motifs | AC074093.1 | intronic | ||||||||
| 2 | 144756174 | 1 | 1 | rs11675927 | G | T | 0.01 | 0.02 | 0.00 | 0.08 | ESC | GR,Sox | AC074093.1 | intronic | |||||||
| 2 | 144760483 | 1 | 1 | rs72853214 | A | C | 0.02 | 0.03 | 0.00 | 0.08 | Sin3Ak-20,Tel2 | AC074093.1 | intronic | ||||||||
| 2 | 144771232 | 1 | 1 | rs72853221 | C | A | 0.01 | 0.02 | 0.00 | 0.08 | BRN | 5 tissues | SKIN | AC074093.1 | intronic | ||||||
| 2 | 144776898 | 1 | 1 | rs72853226 | C | A | 0.01 | 0.02 | 0.00 | 0.08 | 4 tissues | SKIN,SKIN,LNG | 5 altered motifs | AC074093.1 | intronic | ||||||
| 2 | 144783694 | 1 | 1 | rs72853229 | A | G | 0.01 | 0.02 | 0.00 | 0.08 | Pbx-1 | AC074093.1 | intronic | ||||||||
| 1 | 1 | rs145691104 | 7-mer | C | 0.01 | 0.02 | 0.00 | 0.08 | ZEB1 | AC074093.1 | intronic | ||||||||||
| 2 | 144786530 | 1 | 1 | rs113593659 | G | A | 0.01 | 0.02 | 0.00 | 0.08 | AC074093.1 | intronic | |||||||||
| 2 | 144792389 | 1 | 1 | rs67365209 | A | C | 0.14 | 0.02 | 0.00 | 0.08 | 36 altered motifs | AC074093.1 | intronic | ||||||||
| 2 | 144797705 | 1 | 1 | rs72853247 | C | T | 0.01 | 0.02 | 0.00 | 0.08 | LNG, GI, BLD | E2F | AC074093.1 | intronic | |||||||
| 2 | 144803323 | 1 | 1 | rs72853253 | C | T | 0.00 | 0.02 | 0.00 | 0.08 | ESDR | 6 altered motifs | AC074093.1 | intronic | |||||||
| 2 | 144804051 | 1 | 1 | rs11687464 | G | A | 0.00 | 0.02 | 0.00 | 0.08 | 7 altered motifs | AC074093.1 | intronic | ||||||||
| 2 | 144810161 | 1 | 1 | rs11674685 | C | A | 0.01 | 0.02 | 0.00 | 0.08 | ESDR | 5 altered motifs | AC074093.1 | intronic | |||||||
| 2 | 144812852 | 1 | 1 | rs72853263 | G | T | 0.01 | 0.02 | 0.00 | 0.08 | Foxa,Foxj2 | AC074093.1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 50704919 | 1 | 1 | rs11649521 | G | A | 0.05 | 0.21 | 0.00 | 0.28 | 4 altered motifs | 5 hits | NOD2 | intronic | |||||||
| 16 | 50705671 | 1 | 1 | rs17221417 | C | G | 0.05 | 0.22 | 0.00 | 0.28 | BLD, VAS | BLD,SKIN,VAS | CFOS,GATA2 | NRSF | 1 hit | 3 hits | 5 hits | NOD2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 31574531 | 1 | 1 | rs1799964 | T | C | 0.17 | 0.23 | 0.19 | 0.22 | BLD | 7 tissues | 4 bound proteins | RXRA,TATA | 1 hit | 1 hit | 9 hits | 206bp 3' of LTA |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 19 | 48702851 | 1 | 1 | rs679574 | C | G | 0.49 | 0.38 | 0.01 | 0.43 | SPLN | RREB-1 | 31 hits | FUT2 | intronic | ||||||
| 19 | 48702888 | 1 | 1 | rs516316 | G | C | 0.49 | 0.38 | 0.01 | 0.43 | SPLN | Myc,Nrf1 | 1 hit | 30 hits | FUT2 | intronic | |||||
| 19 | 48702915 | 1 | 1 | rs516246 | C | T | 0.49 | 0.38 | 0.01 | 0.43 | SPLN | 8 altered motifs | 3 hits | 178 hits | 31 hits | FUT2 | intronic | ||||
| 19 | 48703205 | 1 | 1 | rs681343 | C | T | 0.49 | 0.38 | 0.01 | 0.43 | 1 hit | 31 hits | FUT2 | synonymous | |||||||
| 19 | 48703417 | 1 | 1 | rs601338 | G | A | 0.49 | 0.38 | 0.01 | 0.43 | HDAC2,HNF4 | 2 hits | 31 hits | FUT2 | nonsense |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 110426390 | 1 | 1 | rs11195128 | C | T | 0.17 | 0.23 | 0.16 | 0.33 | 5 tissues | 16 tissues | 18 tissues | 6 bound proteins | Arid3a,Cphx,p300 | 1 hit | 1 hit | 2.4kb 3' of RP11-525A16.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 62325186 | 1 | 1 | rs11679753 | A | G | 0.45 | 0.59 | 0.62 | 0.61 | BLD | BLD | 14 altered motifs | 1 hit | 60kb 3' of snoU13 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 58185163 | 1 | 1 | rs1199106 | C | T | 0.68 | 0.25 | 0.43 | 0.21 | CCNT2,GATA,TAL1 | 20 hits | 6.4kb 3' of IPMK | ||||||||
| 10 | 58187020 | 1 | 1 | rs1199104 | T | G | 0.67 | 0.25 | 0.43 | 0.21 | Rad21,SP1,THAP1 | 19 hits | 4.5kb 3' of IPMK | ||||||||
| 10 | 58187470 | 1 | 1 | rs1199103 | A | G | 0.68 | 0.24 | 0.43 | 0.21 | Sox | 2 hits | 20 hits | 4kb 3' of IPMK | |||||||
| 10 | 58187542 | 1 | 1 | rs1199102 | C | G | 0.68 | 0.25 | 0.43 | 0.21 | 20 hits | 4kb 3' of IPMK | |||||||||
| 10 | 58188140 | 1 | 1 | rs1199101 | C | T | 0.68 | 0.25 | 0.43 | 0.21 | MUS | OVRY | 6 altered motifs | 20 hits | 3.4kb 3' of IPMK | ||||||
| 10 | 58188283 | 1 | 1 | rs1199100 | G | A | 0.68 | 0.25 | 0.43 | 0.21 | MUS | Pou1f1,Pou3f2 | 20 hits | 3.2kb 3' of IPMK |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 7 | 50136058 | 1 | 1 | rs12718244 | G | A | 0.18 | 0.27 | 0.16 | 0.41 | 11 altered motifs | 1 hit | C7orf72 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 197732149 | 1 | 1 | rs2488397 | G | C | 0.34 | 0.23 | 0.19 | 0.18 | ESDR | Ik-1 | 1 hit | DENND1B | intronic | ||||||
| 1 | 197732246 | 1 | 1 | rs2488398 | G | C | 0.34 | 0.23 | 0.19 | 0.18 | ESDR | BLD | 34 altered motifs | 1 hit | DENND1B | intronic | |||||
| 1 | 197732862 | 1 | 1 | rs16841904 | C | T | 0.11 | 0.22 | 0.19 | 0.18 | 4 tissues | Spdef | 1 hit | DENND1B | intronic | ||||||
| 1 | 197733271 | 1 | 1 | rs2488401 | C | T | 0.34 | 0.23 | 0.19 | 0.18 | 6 tissues | FOXA1 | 5 altered motifs | 1 hit | DENND1B | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 27519736 | 1 | 1 | rs780093 | T | C | 0.89 | 0.60 | 0.44 | 0.59 | GI | LIV | INSM1 | 12 hits | 42 hits | 27 hits | GCKR | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 27508073 | 1 | 1 | rs1260326 | T | C | 0.88 | 0.59 | 0.44 | 0.59 | LIV | NRSF | 40 hits | 477 hits | 28 hits | GCKR | missense |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 102316102 | 1 | 1 | rs950880 | C | A | 0.15 | 0.27 | 0.44 | 0.35 | 6 tissues | SKIN,CRVX,VAS | GATA2 | 1 hit | 7 hits | 6 hits | IL1RL1 | intronic | |||
| 2 | 102322576 | 1 | 1 | rs13001325 | C | T | 0.16 | 0.27 | 0.44 | 0.35 | 5 tissues | VAS | HEY1 | 7 hits | 5 hits | IL1RL1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 14 | 75275048 | 1 | 1 | rs1569328 | C | T | 0.01 | 0.08 | 0.28 | 0.16 | BLD | 15 tissues | 32 tissues | 7 bound proteins | Egr-1 | 192 hits | 1 hit | 3.1kb 3' of RP11-293M10.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 161509069 | 1 | 1 | rs4657041 | T | C | 0.48 | 0.45 | 0.28 | 0.50 | BLD | BLD, SKIN | 4 altered motifs | 1 hit | FCGR2A | intronic | |||||
| 1 | 161509955 | 1 | 1 | rs1801274 | A | G | 0.49 | 0.45 | 0.28 | 0.50 | BLD, SPLN | 5 hits | 195 hits | 4 hits | FCGR2A | missense |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 8 | 128541451 | 1 | 1 | rs10103637 | C | A | 0.32 | 0.16 | 0.03 | 0.10 | BLD | NF-kappaB,PU.1,STAT | RP11-89M16.1 | ||||||||
| 8 | 128541457 | 1 | 1 | rs10103640 | C | T | 0.32 | 0.16 | 0.03 | 0.10 | BLD | 22 altered motifs | RP11-89M16.1 | ||||||||
| 8 | 128543197 | 1 | 1 | rs938651 | A | C | 0.32 | 0.16 | 0.03 | 0.10 | BLD | 7 tissues | MUS | RP11-89M16.1 | |||||||
| 8 | 128543286 | 1 | 1 | rs2011527 | T | C | 0.32 | 0.16 | 0.03 | 0.10 | BLD | 7 tissues | 4 tissues | 12 altered motifs | RP11-89M16.1 | ||||||
| 8 | 128543917 | 1 | 1 | rs6470637 | A | G | 0.32 | 0.16 | 0.03 | 0.10 | BLD | 6 tissues | 4 altered motifs | 2 hits | RP11-89M16.1 | ||||||
| 8 | 128544110 | 1 | 1 | rs16903097 | T | G | 0.30 | 0.15 | 0.02 | 0.10 | BLD | 7 tissues | BLD,THYM,PANC | BCL,NRSF,Sin3Ak-20 | RP11-89M16.1 | ||||||
| 8 | 128545277 | 1 | 1 | rs6982966 | G | A | 0.35 | 0.17 | 0.03 | 0.10 | BLD | 4 altered motifs | RP11-89M16.1 | ||||||||
| 8 | 128545346 | 1 | 1 | rs6982716 | A | G | 0.36 | 0.17 | 0.03 | 0.10 | BLD | RP11-89M16.1 | |||||||||
| 8 | 128545706 | 1 | 1 | rs73374987 | C | T | 0.27 | 0.15 | 0.03 | 0.10 | BLD | 4 altered motifs | RP11-89M16.1 | ||||||||
| 8 | 128547065 | 1 | 1 | rs10098765 | A | G | 0.29 | 0.15 | 0.01 | 0.10 | Nrf1,TATA,TCF4 | RP11-89M16.1 | |||||||||
| 8 | 128548482 | 1 | 1 | rs10678821 | T | TTTTC | 0.29 | 0.15 | 0.02 | 0.10 | 7 altered motifs | RP11-89M16.1 | |||||||||
| 8 | 128548970 | 1 | 1 | rs77247401 | C | CTG | 0.29 | 0.16 | 0.03 | 0.10 | GR,Nkx2 | RP11-89M16.1 | |||||||||
| 8 | 128549077 | 1 | 1 | rs73374998 | T | A | 0.36 | 0.17 | 0.03 | 0.10 | PLCNT,LNG | RP11-89M16.1 | |||||||||
| 8 | 128549620 | 1 | 1 | rs73375000 | C | T | 0.29 | 0.15 | 0.03 | 0.10 | Eomes,Spz1 | RP11-89M16.1 | |||||||||
| 8 | 128550184 | 1 | 1 | rs10089868 | A | C | 0.29 | 0.15 | 0.01 | 0.10 | 4 altered motifs | RP11-89M16.1 | |||||||||
| 8 | 128550212 | 1 | 1 | rs10089972 | C | T | 0.29 | 0.15 | 0.01 | 0.10 | GR,Sin3Ak-20,YY1 | RP11-89M16.1 | |||||||||
| 8 | 128552698 | 1 | 1 | rs73376904 | A | T | 0.29 | 0.16 | 0.03 | 0.10 | BLD, GI, LIV | GI | 5 altered motifs | RP11-89M16.1 | |||||||
| 8 | 128554935 | 1 | 1 | rs6651252 | T | C | 0.33 | 0.17 | 0.03 | 0.10 | BLD, PANC, LNG | 10 tissues | 21 tissues | 12 bound proteins | SP1,TCF4 | 2 hits | 135 hits | RP11-89M16.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 191066738 | 1 | 1 | rs1517352 | A | C | 0.07 | 0.50 | 0.53 | 0.61 | FAT, BLD | 5 tissues | BLD | HMG-IY,Ik-2 | 1 hit | 483 hits | 1 hit | STAT4 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 90246276 | 1 | 1 | rs62408224 | A | G | 0.09 | 0.28 | 0.05 | 0.35 | BLD, HRT | Hoxa13,Hoxb13,Nkx3 | BACH2 | intronic | |||||||
| 6 | 90246690 | 1 | 1 | rs62408225 | A | G | 0.11 | 0.28 | 0.04 | 0.35 | BLD | 19 altered motifs | BACH2 | intronic | |||||||
| 6 | 90248783 | 1 | 1 | rs905670 | G | A | 0.09 | 0.28 | 0.05 | 0.35 | BLD, SKIN, THYM | 8 altered motifs | BACH2 | intronic | |||||||
| 6 | 90255452 | 1 | 1 | rs62408227 | A | G | 0.16 | 0.28 | 0.05 | 0.35 | BLD, THYM | Mxi1,SIX5,TBX5 | BACH2 | intronic | |||||||
| 6 | 90256696 | 1 | 1 | rs11752685 | A | C | 0.11 | 0.28 | 0.05 | 0.35 | MUS | 11 tissues | Foxd1,Foxo,HDAC2 | BACH2 | intronic | ||||||
| 6 | 90257478 | 1 | 1 | rs1604831 | G | A | 0.10 | 0.28 | 0.05 | 0.35 | 10 tissues | MAFK | COMP1 | BACH2 | intronic | ||||||
| 6 | 90259502 | 1 | 1 | rs1604830 | T | C | 0.08 | 0.28 | 0.05 | 0.35 | BLD | 4 altered motifs | BACH2 | intronic | |||||||
| 6 | 90260493 | 1 | 1 | rs2089126 | A | G | 0.17 | 0.28 | 0.05 | 0.35 | BLD | Foxl1,GR,Mef2 | BACH2 | intronic | |||||||
| 6 | 90263440 | 1 | 1 | rs1847472 | C | A | 0.11 | 0.28 | 0.05 | 0.35 | 5 tissues | Ncx,PLZF,TATA | 2 hits | 387 hits | BACH2 | intronic | |||||
| 6 | 90266271 | 1 | 1 | rs56106243 | C | T | 0.11 | 0.28 | 0.05 | 0.35 | BLD | BLD, THYM | BACH2 | intronic | |||||||
| 6 | 90266515 | 1 | 1 | rs55885254 | T | C | 0.09 | 0.28 | 0.05 | 0.35 | BLD | BLD, THYM | Myb | BACH2 | intronic | ||||||
| 6 | 90266890 | 1 | 1 | rs62408233 | G | A | 0.09 | 0.28 | 0.05 | 0.35 | BLD | 4 tissues | Nkx2,PU.1 | BACH2 | intronic | ||||||
| 6 | 90268664 | 1 | 1 | rs62408235 | T | C | 0.05 | 0.27 | 0.01 | 0.35 | BLD | BLD, THYM | 4 altered motifs | BACH2 | intronic | ||||||
| 6 | 90270429 | 1 | 1 | rs62408236 | C | T | 0.16 | 0.28 | 0.05 | 0.35 | BLD, THYM | Pax-3,Pax-5 | BACH2 | intronic | |||||||
| 6 | 90270626 | 1 | 1 | rs62408237 | C | G | 0.17 | 0.28 | 0.05 | 0.35 | BLD | 7 altered motifs | BACH2 | intronic | |||||||
| 6 | 90271600 | 1 | 1 | rs55771973 | T | G | 0.09 | 0.28 | 0.05 | 0.35 | BLD | BLD | NF-I,p53 | BACH2 | intronic | ||||||
| 6 | 90271938 | 1 | 1 | rs45553631 | C | T | 0.16 | 0.28 | 0.05 | 0.35 | BLD | BLD, THYM, SPLN | 5 tissues | BACH2 | 5'-UTR | ||||||
| 6 | 90272668 | 1 | 1 | rs969577 | T | C | 0.05 | 0.27 | 0.01 | 0.35 | BLD | BLD, THYM, SPLN | 4 altered motifs | BACH2 | intronic | ||||||
| 6 | 90274131 | 1 | 1 | rs905671 | A | T | 0.16 | 0.28 | 0.05 | 0.35 | BLD, THYM | BLD, MUS, THYM | BLD,BLD,THYM | KAP1 | BCL,CEBPG | BACH2 | intronic | ||||
| 6 | 90276634 | 1 | 1 | rs6454805 | A | G | 0.19 | 0.28 | 0.05 | 0.35 | BLD | BLD | 6 altered motifs | BACH2 | intronic | ||||||
| 6 | 90276840 | 1 | 1 | rs6899623 | A | G | 0.19 | 0.28 | 0.05 | 0.35 | BLD | BLD | Foxp1,HDAC2 | BACH2 | intronic | ||||||
| 6 | 90277030 | 1 | 1 | rs2325292 | T | C | 0.17 | 0.28 | 0.05 | 0.35 | BLD | BLD | Mef2,SIX5 | BACH2 | intronic | ||||||
| 6 | 90277793 | 1 | 1 | rs2134814 | C | G | 0.12 | 0.28 | 0.05 | 0.35 | MUS | BLD, THYM, MUS | HRT | Evi-1,Osr | BACH2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 159069404 | 1 | 1 | rs212388 | C | T | 0.32 | 0.45 | 0.37 | 0.58 | ESC, IPSC, BLD | IPSC, BLD, THYM | 5 tissues | MAX | Ik-1,MZF1::1-4,STAT | 3 hits | 379 hits | 1 hit | 4.1kb 5' of RP1-111C20.3 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 62710915 | 1 | 1 | rs224136 | C | T | 0.81 | 0.24 | 0.28 | 0.18 | BLD | ESDR, BLD | BLD | BATF,Irf | 1 hit | 2 hits | 39kb 3' of ZNF365 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 96895668 | 1 | 1 | rs2549783 | T | C | 0.64 | 0.68 | 0.68 | 0.59 | BLD, HRT | BLD | Myc,NF-kappaB | 105 hits | ERAP2 | intronic | |||||
| 5 | 96898829 | 1 | 1 | rs3849749 | A | T | 0.64 | 0.69 | 0.73 | 0.59 | Smad4 | 105 hits | ERAP2 | intronic | |||||||
| 5 | 96900708 | 1 | 1 | rs251340 | A | G | 0.64 | 0.68 | 0.72 | 0.59 | Pax-5 | 102 hits | ERAP2 | intronic | |||||||
| 5 | 96904223 | 1 | 1 | rs2548530 | T | C | 0.64 | 0.68 | 0.73 | 0.59 | ESDR, FAT, BLD | 5 tissues | 9 altered motifs | 104 hits | ERAP2 | intronic | |||||
| 5 | 96908845 | 1 | 1 | rs2549794 | C | T | 0.64 | 0.68 | 0.73 | 0.59 | LIV, ADRL, MUS | 1 hit | 7 hits | 116 hits | ERAP2 | intronic | |||||
| 5 | 96911730 | 1 | 1 | rs2910793 | G | A | 0.64 | 0.68 | 0.73 | 0.59 | MUS | HNF1,NRSF,TCF12 | 102 hits | ERAP2 | intronic | ||||||
| 5 | 96913944 | 1 | 1 | rs2859491 | T | C | 0.64 | 0.69 | 0.72 | 0.59 | 102 hits | ERAP2 | intronic | ||||||||
| 5 | 96915971 | 1 | -1 | rs2351011 | C | A | 0.36 | 0.32 | 0.28 | 0.41 | Crx,Pitx2,SREBP | 102 hits | ERAP2 | intronic | |||||||
| 5 | 96916375 | 1 | -1 | rs2927609 | G | A | 0.36 | 0.32 | 0.28 | 0.41 | Sox | 105 hits | ERAP2 | intronic | |||||||
| 5 | 96917099 | 1 | -1 | rs1363907 | G | A | 0.36 | 0.31 | 0.28 | 0.41 | Pax-4,Sox | 1 hit | 177 hits | 111 hits | ERAP2 | intronic | |||||
| 5 | 96917294 | 1 | -1 | rs1820148 | A | G | 0.36 | 0.32 | 0.28 | 0.41 | 8 altered motifs | 101 hits | ERAP2 | intronic | |||||||
| 5 | 96917400 | 1 | -1 | rs1363908 | T | C | 0.36 | 0.32 | 0.28 | 0.41 | 7 altered motifs | 102 hits | ERAP2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 13 | 99255087 | 1 | 1 | rs3742130 | G | A | 0.04 | 0.18 | 0.05 | 0.21 | BLD, GI, MUS | BLD,MUS,MUS | DMRT3,GR,Znf143 | 184 hits | 1 hit | GPR18 | synonymous | ||||
| 13 | 99264182 | 1 | 1 | rs12857217 | C | T | 0.08 | 0.19 | 0.05 | 0.21 | BLD | 8 tissues | 9 tissues | 1 hit | 1 hit | UBAC2 | intronic | ||||
| 13 | 99267626 | 1 | 1 | rs9557189 | A | G | 0.04 | 0.18 | 0.05 | 0.21 | ESDR, BLD | BLD | 4 altered motifs | 1 hit | 1 hit | UBAC2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 13 | 43883789 | 1 | 1 | rs3764147 | A | G | 0.33 | 0.37 | 0.32 | 0.24 | FAT | 6 tissues | 5 altered motifs | 4 hits | 321 hits | 17 hits | LACC1 | missense | |||
| 13 | 43886106 | 1 | 1 | rs1932990 | C | T | 0.33 | 0.37 | 0.32 | 0.24 | 9 altered motifs | 17 hits | LACC1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 17 | 56801221 | 1 | 1 | rs2197258 | A | T | 0.70 | 0.65 | 0.83 | 0.63 | Foxi1,Foxq1,TCF12 | 16 hits | C17orf67 | intronic | |||||||
| 17 | 56802721 | 1 | 1 | rs6503764 | T | C | 0.70 | 0.65 | 0.83 | 0.63 | 6 tissues | IPSC | Foxa,TCF12,p300 | 16 hits | C17orf67 | intronic | |||||
| 17 | 56803211 | 1 | 1 | rs6503765 | G | A | 0.70 | 0.65 | 0.83 | 0.63 | 5 tissues | LNG | Irx | 1 hit | 16 hits | C17orf67 | intronic | ||||
| 17 | 56803632 | 1 | 1 | rs3853824 | T | C | 0.69 | 0.65 | 0.83 | 0.63 | LNG | 4 altered motifs | 1 hit | 16 hits | C17orf67 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 181443625 | 1 | 1 | rs6740847 | A | G | 0.69 | 0.44 | 0.35 | 0.57 | BLD | 10 altered motifs | 5 hits | 5 hits | 14kb 5' of ITGA4 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 200905101 | 1 | 1 | rs35730213 | G | C | 0.15 | 0.19 | 0.00 | 0.26 | 7 tissues | Dobox4 | 8 hits | C1orf106 | intronic | ||||||
| 1 | 200905967 | 1 | 1 | rs12132298 | T | C | 0.15 | 0.19 | 0.00 | 0.26 | 6 tissues | 18 tissues | 5 bound proteins | HNF1,TCF4 | 8 hits | C1orf106 | intronic | ||||
| 1 | 200906769 | 1 | 1 | rs59655222 | T | C | 0.15 | 0.19 | 0.00 | 0.26 | 5 tissues | ESDR,PLCNT | 8 hits | C1orf106 | intronic | ||||||
| 1 | 200908434 | 1 | 1 | rs7554511 | C | A | 0.15 | 0.19 | 0.00 | 0.26 | GI | 10 tissues | GI,GI | FOXA1 | GATA,Maf | 5 hits | 574 hits | 8 hits | C1orf106 | intronic | |
| 1 | 200908722 | 1 | 1 | rs41299637 | T | G | 0.15 | 0.19 | 0.00 | 0.26 | GI | 6 tissues | LNG,PLCNT | CMYC,GATA3,P300 | 8 hits | C1orf106 | intronic | ||||
| 1 | 200909599 | 1 | 1 | rs12131796 | G | A | 0.15 | 0.19 | 0.00 | 0.26 | STRM, GI, LNG | BLD | 4 altered motifs | 8 hits | C1orf106 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 198629533 | 1 | 1 | rs7555082 | G | A | 0.08 | 0.06 | 0.00 | 0.11 | BLD | BLD | NF-kappaB | 1 hit | 9.1kb 5' of PTPRC |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 198632575 | 1 | 1 | rs76181804 | A | G | 0.08 | 0.06 | 0.00 | 0.11 | BLD | BLD, THYM | 5 altered motifs | 6.1kb 5' of PTPRC | |||||||
| 1 | 198641406 | 1 | 1 | rs75567729 | A | G | 0.08 | 0.06 | 0.00 | 0.11 | 5 tissues | MUS, BRST | THYM | Hoxd10,Pou6f1 | PTPRC | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 110426390 | 1 | 1 | rs11195128 | C | T | 0.17 | 0.23 | 0.16 | 0.33 | 5 tissues | 16 tissues | 18 tissues | 6 bound proteins | Arid3a,Cphx,p300 | 1 hit | 1 hit | 2.4kb 3' of RP11-525A16.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 150816941 | 1 | 1 | rs75294883 | T | C | 0.03 | 0.11 | 0.35 | 0.09 | DMRT7 | 44 hits | 20kb 3' of C5orf62 | ||||||||
| 5 | 150843825 | 1 | 1 | rs13361189 | T | C | 0.46 | 0.15 | 0.44 | 0.09 | Hoxa4,Pou2f2,Zfp410 | 1 hit | 1 hit | 33 hits | 2.7kb 5' of IRGM | ||||||
| 5 | 150843953 | 1 | 1 | rs76548544 | T | A | 0.46 | 0.15 | 0.44 | 0.09 | 9 altered motifs | 31 hits | 2.6kb 5' of IRGM | ||||||||
| 5 | 150844085 | 1 | 1 | rs73282255 | A | T | 0.46 | 0.15 | 0.44 | 0.09 | GI | Pitx2,STAT | 31 hits | 2.4kb 5' of IRGM | |||||||
| 5 | 150844160 | 1 | 1 | rs75774363 | C | T | 0.31 | 0.14 | 0.44 | 0.09 | GI | Irf,Pax-5 | 36 hits | 2.4kb 5' of IRGM | |||||||
| 5 | 150844175 | 1 | 1 | rs80075680 | C | T | 0.46 | 0.15 | 0.44 | 0.09 | GI | HP1-site-factor,Hand1 | 31 hits | 2.3kb 5' of IRGM | |||||||
| 5 | 150844817 | 1 | 1 | rs75071288 | C | T | 0.46 | 0.15 | 0.44 | 0.09 | BCL3 | Egr-1 | 31 hits | 1.7kb 5' of IRGM | |||||||
| 5 | 150845362 | 1 | 1 | rs4958843 | T | C | 0.46 | 0.15 | 0.44 | 0.09 | CTCF,Nkx2,Rad21 | 31 hits | 1.2kb 5' of IRGM | ||||||||
| 5 | 150845390 | 1 | 1 | rs4958423 | G | A | 0.45 | 0.15 | 0.44 | 0.09 | 7 altered motifs | 32 hits | 1.1kb 5' of IRGM | ||||||||
| 5 | 150845474 | 1 | 1 | rs4958424 | C | T | 0.46 | 0.15 | 0.44 | 0.09 | 5 altered motifs | 31 hits | 1kb 5' of IRGM | ||||||||
| 5 | 150845506 | 1 | 1 | rs2004711 | C | T | 0.47 | 0.15 | 0.44 | 0.09 | AP-2,HES1 | 32 hits | 1kb 5' of IRGM | ||||||||
| 5 | 150845551 | 1 | 1 | rs751627 | G | A | 0.46 | 0.15 | 0.44 | 0.09 | 4 altered motifs | 32 hits | 971bp 5' of IRGM | ||||||||
| 5 | 150846025 | 1 | 1 | rs59283234 | A | G | 0.46 | 0.15 | 0.44 | 0.09 | BLD | 31 hits | 497bp 5' of IRGM | ||||||||
| 5 | 150846862 | 1 | 1 | rs10051804 | T | C | 0.46 | 0.15 | 0.45 | 0.09 | 7 tissues | 31 hits | IRGM | 5'-UTR | |||||||
| 5 | 150847337 | 1 | 1 | rs17111376 | T | C | 0.46 | 0.15 | 0.44 | 0.09 | BLD | 7 tissues | 45 tissues | 17 bound proteins | Cdx,Hand1,Smad3 | 31 hits | IRGM | intronic | |||
| 5 | 150848436 | 1 | 1 | rs10065172 | C | T | 0.46 | 0.15 | 0.44 | 0.09 | 5 tissues | En-1,Nkx2,Rad21 | 32 hits | IRGM | synonymous |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 19 | 46346549 | 1 | 1 | rs4802307 | G | T | 0.03 | 0.24 | 0.04 | 0.29 | 24 tissues | BRST | 40 tissues | CEBPB,POL2 | HNF4 | 1 hit | 263 hits | 7 hits | 444bp 5' of PPP5C |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 14 | 68743482 | 1 | 1 | rs4902642 | G | A | 0.26 | 0.31 | 0.26 | 0.43 | ESDR, BLD | 4 tissues | GATA,Pax-5 | 1 hit | 7.5kb 5' of U6 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 13 | 42336183 | 1 | 1 | rs61959448 | G | A | 0.04 | 0.12 | 0.14 | 0.12 | 4 altered motifs | 13kb 3' of AKAP11 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 22 | 41468212 | 1 | 1 | rs505533 | A | C | 0.29 | 0.44 | 0.49 | 0.78 | 24 tissues | 4 tissues | Ets | 68 hits | PHF5A | intronic | |||||
| 22 | 41471373 | 1 | 1 | rs727563 | C | T | 0.22 | 0.44 | 0.49 | 0.78 | 4 tissues | 10 tissues | GI,GI | HNF1 | 69 hits | ACO2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 67182913 | 1 | 1 | rs76418789 | G | A | 0.00 | 0.00 | 0.07 | 0.00 | BRN | STAT | 1 hit | IL23R | missense |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 105987150 | 1 | 1 | rs6568421 | A | G | 0.17 | 0.19 | 0.00 | 0.29 | 6 tissues | 5 tissues | Nkx2 | 2 hits | 82kb 3' of 7SK | ||||||
| 6 | 105987394 | 1 | 1 | rs7746082 | G | C | 0.01 | 0.18 | 0.00 | 0.29 | 5 tissues | MUS,MUS,SKIN | Cphx,HNF4 | 1 hit | 272 hits | 83kb 3' of 7SK |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 29750801 | 1 | 1 | rs3823318 | C | G | 0.13 | 0.07 | 0.27 | 0.09 | SKIN | SKIN, HRT, SPLN | BLD | Sox | 34 hits | 328bp 3' of Y_RNA | |||||
| 6 | 29754974 | 1 | 1 | rs9258258 | A | T | 0.13 | 0.07 | 0.27 | 0.09 | 25 altered motifs | 34 hits | 4.5kb 3' of Y_RNA | ||||||||
| 6 | 29755244 | 1 | 1 | rs9258259 | A | T | 0.13 | 0.07 | 0.27 | 0.09 | ESC | 34 hits | 4.8kb 3' of Y_RNA | ||||||||
| 6 | 29755384 | 1 | 1 | rs9258260 | C | T | 0.11 | 0.07 | 0.27 | 0.09 | ESC | BCL3 | 1 hit | 5 hits | 34 hits | 4.9kb 3' of Y_RNA | |||||
| 6 | 29756287 | 1 | 1 | rs9258262 | G | A | 0.13 | 0.07 | 0.27 | 0.09 | ESC, IPSC, GI | GI | Foxj2,Pou1f1 | 34 hits | 5.8kb 3' of Y_RNA | ||||||
| 6 | 29760904 | 1 | 1 | rs9258272 | A | G | 0.13 | 0.07 | 0.26 | 0.09 | 4 altered motifs | 31 hits | 10kb 3' of Y_RNA |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 12 | 40197810 | 1 | 1 | rs11564212 | G | T | 0.01 | 0.16 | 0.02 | 0.02 | LIV, BLD | 10 altered motifs | AC079630.4 | ||||||||
| 12 | 40198538 | 1 | 1 | rs4767965 | G | A | 0.01 | 0.16 | 0.03 | 0.02 | BCL,NRSF,Smad | AC079630.4 | |||||||||
| 12 | 40200117 | 1 | 1 | rs17465610 | C | T | 0.01 | 0.16 | 0.04 | 0.02 | 10 altered motifs | AC079630.4 | |||||||||
| 12 | 40205596 | 1 | 1 | rs10506147 | T | C | 0.01 | 0.16 | 0.03 | 0.02 | PLZF | AC079630.4 | |||||||||
| 12 | 40208138 | 1 | 1 | rs11175593 | C | T | 0.01 | 0.16 | 0.03 | 0.02 | BLD | 4 tissues | E2F,ZEB1 | 1 hit | AC079630.4 | ||||||
| 12 | 40215778 | 1 | 1 | rs17461575 | C | T | 0.01 | 0.16 | 0.03 | 0.02 | BLD | 4 tissues | SMC3 | AC079630.4 | |||||||
| 12 | 40215948 | 1 | 1 | rs11564107 | A | G | 0.01 | 0.16 | 0.03 | 0.02 | BLD | 7 tissues | SKIN,CRVX | AC079630.4 | |||||||
| 12 | 40224295 | 1 | 1 | rs1388597 | A | G | 0.01 | 0.16 | 0.03 | 0.02 | 23 tissues | 4 tissues | 5 tissues | 5 altered motifs | LRRK2 | ||||||
| 12 | 40224912 | 1 | 1 | rs139549144 | C | G | 0.01 | 0.16 | 0.03 | 0.02 | 24 tissues | BLD, BRN, HRT | 46 tissues | 8 bound proteins | 6 altered motifs | LRRK2 | |||||
| 12 | 40227354 | 1 | 1 | rs149406366 | G | A | 0.01 | 0.16 | 0.03 | 0.02 | 5 tissues | 4 tissues | 18 altered motifs | LRRK2 | intronic | ||||||
| 12 | 40228666 | 1 | 1 | rs150540643 | C | A | 0.01 | 0.16 | 0.03 | 0.02 | BLD | 5 tissues | 5 altered motifs | LRRK2 | intronic | ||||||
| 12 | 40235945 | 1 | 1 | rs117297508 | C | T | 0.01 | 0.16 | 0.03 | 0.02 | BLD | 5 altered motifs | LRRK2 | intronic | |||||||
| 12 | 40240401 | 1 | 1 | rs11564187 | A | G | 0.01 | 0.16 | 0.03 | 0.02 | CDP,Pou2f2 | LRRK2 | intronic | ||||||||
| 12 | 40241017 | 1 | 1 | rs11564210 | C | T | 0.01 | 0.16 | 0.03 | 0.02 | 4 tissues | BLD,BLD | 6 altered motifs | LRRK2 | intronic | ||||||
| 12 | 40241189 | 1 | 1 | rs11564153 | C | T | 0.01 | 0.16 | 0.03 | 0.02 | 4 tissues | Ik-2 | LRRK2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 11610795 | 1 | 1 | rs11641184 | C | A | 0.05 | 0.48 | 0.34 | 0.44 | 6 tissues | 14 tissues | CTCF | Irx,Pou2f2 | 1 hit | 1 hit | LITAF |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 50718253 | 1 | 1 | rs62029864 | G | A | 0.05 | 0.15 | 0.00 | 0.22 | FAT, SKIN | 6 tissues | 6 tissues | GATA2 | GR,Irf,Nkx2 | 1 hit | NOD2 | intronic | |||
| 16 | 50722970 | 1 | 1 | rs2076756 | A | G | 0.05 | 0.15 | 0.00 | 0.22 | BLD | Mef2,Nanog | 6 hits | 1 hit | 3 hits | NOD2 | intronic | ||||
| 16 | 50724938 | 1 | 1 | rs749910 | G | A | 0.05 | 0.15 | 0.00 | 0.22 | BLD | LNG | HEY1,TATA | 1 hit | NOD2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 28517460 | 1 | 1 | rs28449958 | G | A | 0.23 | 0.29 | 0.10 | 0.31 | 6 altered motifs | 134 hits | 5.4kb 5' of IL27 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 9 | 114802595 | 1 | 1 | rs4366152 | T | C | 0.89 | 0.74 | 0.53 | 0.69 | GI, PLCNT | Nanog | 1 hit | 2 hits | TNFSF15 | intronic | |||||
| 9 | 114804160 | 1 | 1 | rs4263839 | A | G | 0.89 | 0.74 | 0.53 | 0.69 | 4 tissues | 20 tissues | 11 tissues | GATA3 | 8 altered motifs | 1 hit | 3 hits | 2 hits | TNFSF15 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 62324337 | 1 | 1 | rs10865331 | A | G | 0.46 | 0.60 | 0.61 | 0.62 | 4 altered motifs | 3 hits | 219 hits | 1 hit | 59kb 3' of snoU13 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 99524880 | 1 | 1 | rs4129132 | T | G | 0.40 | 0.57 | 0.53 | 0.52 | 6 tissues | ZNF263 | Brachyury,Pax-5 | 8 hits | 1.5kb 3' of RP11-129J12.2 | ||||||
| 10 | 99525893 | 1 | 1 | rs7916751 | T | A | 0.57 | 0.59 | 0.53 | 0.52 | ESC, BLD, GI | ESDR,ESDR | p53 | 8 hits | 456bp 3' of RP11-129J12.2 | ||||||
| 10 | 99526115 | 1 | 1 | rs10748783 | C | A | 0.46 | 0.58 | 0.54 | 0.52 | ESDR,ESC | 8 altered motifs | 8 hits | 234bp 3' of RP11-129J12.2 | |||||||
| 10 | 99526738 | 1 | 1 | rs6584282 | A | G | 0.47 | 0.58 | 0.53 | 0.52 | IPSC, BLD | 7 tissues | ESC,ESDR,IPSC | AP-1,NF-E2 | 8 hits | RP11-129J12.2 | |||||
| 10 | 99527091 | 1 | 1 | rs11190135 | A | G | 0.52 | 0.58 | 0.53 | 0.52 | 4 tissues | 7 tissues | 6 tissues | CTBP2,ZNF263 | MZF1::1-4,VDR | 8 hits | RP11-129J12.2 | ||||
| 10 | 99527227 | 1 | 1 | rs10883362 | C | T | 0.52 | 0.58 | 0.53 | 0.52 | 13 tissues | CTBP2,SUZ12,ZNF263 | Rad21,ZBTB33 | 8 hits | RP11-129J12.2 | ||||||
| 10 | 99528007 | 1 | 1 | rs10883365 | G | A | 0.48 | 0.58 | 0.53 | 0.52 | 25 tissues | 2 hits | 8 hits | RP11-129J12.2 | |||||||
| 10 | 99528028 | 1 | 1 | rs10883366 | G | A | 0.52 | 0.58 | 0.53 | 0.52 | 23 tissues | AP-2,EBF,Zic | 8 hits | RP11-129J12.2 | |||||||
| 10 | 99528233 | 1 | 1 | rs10883367 | T | C | 0.52 | 0.58 | 0.53 | 0.52 | 21 tissues | 8 hits | RP11-129J12.2 | ||||||||
| 10 | 99528590 | 1 | 1 | rs7085798 | C | A | 0.52 | 0.58 | 0.53 | 0.52 | BLD, GI | ESDR, ESC, BLD | 12 tissues | 5 altered motifs | 8 hits | RP11-129J12.2 | |||||
| 10 | 99529896 | 1 | 1 | rs1548964 | G | C | 0.49 | 0.58 | 0.54 | 0.52 | 4 tissues | 7 tissues | 21 tissues | 4 bound proteins | Nanog,RXRA | 8 hits | RP11-129J12.2 | ||||
| 10 | 99529946 | 1 | 1 | rs1548963 | C | G | 0.49 | 0.58 | 0.54 | 0.52 | 4 tissues | 7 tissues | 16 tissues | 4 bound proteins | GATA | 8 hits | RP11-129J12.2 | ||||
| 10 | 99529978 | 1 | 1 | rs1548962 | G | C | 0.49 | 0.58 | 0.54 | 0.52 | 4 tissues | 7 tissues | 13 tissues | 4 bound proteins | BAF155 | 8 hits | RP11-129J12.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 11 | 64382898 | 1 | 1 | rs559928 | T | C | 0.65 | 0.89 | 0.89 | 0.83 | 7 tissues | IPSC,BLD | JUND | GR | 1 hit | 449 hits | 9 hits | 11kb 3' of RPS6KA4 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 127134977 | 1 | 1 | rs9491697 | A | G | 0.30 | 0.46 | 0.53 | 0.42 | FAT, MUS, LNG | GATA,Pax-4 | 1 hit | 2 hits | RSPO3 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 30434902 | 1 | 1 | rs306589 | A | G | 0.16 | 0.51 | 0.39 | 0.61 | 23 tissues | 52 tissues | POL24H8 | Pax-5,Pitx2 | 5 hits | MAP3K8 | intronic | ||||
| 10 | 30438155 | 1 | 1 | rs303448 | G | T | 0.17 | 0.51 | 0.39 | 0.61 | 13 tissues | 17 tissues | 9 tissues | 16 altered motifs | 6 hits | MAP3K8 | intronic | ||||
| 10 | 30439172 | 1 | 1 | rs1042058 | T | C | 0.13 | 0.51 | 0.39 | 0.61 | 4 tissues | POL24H8 | Irf,Lmo2-complex | 1 hit | 258 hits | 5 hits | MAP3K8 | synonymous | |||
| 10 | 30439321 | 1 | 1 | rs2907 | A | G | 0.17 | 0.51 | 0.39 | 0.61 | 8 tissues | BLD | p300 | 5 hits | MAP3K8 | intronic | |||||
| 10 | 30439560 | 1 | 1 | rs303446 | C | T | 0.18 | 0.51 | 0.39 | 0.61 | 8 tissues | BLD | DEC,GATA,Hmx | 4 hits | MAP3K8 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 13 | 42465537 | 1 | 1 | rs4512994 | A | C | 0.27 | 0.44 | 0.16 | 0.56 | BLD | Mef2,VDR | 6 hits | 97kb 5' of TNFSF11 | |||||||
| 13 | 42465907 | 1 | 1 | rs9594766 | G | A | 0.27 | 0.44 | 0.16 | 0.56 | BLD, GI | LF-A1 | 7 hits | 97kb 5' of TNFSF11 | |||||||
| 13 | 42469110 | 1 | 1 | rs12428853 | A | G | 0.27 | 0.44 | 0.16 | 0.56 | 6 altered motifs | 6 hits | 94kb 5' of TNFSF11 | ||||||||
| 13 | 42469459 | 1 | 1 | rs12428878 | A | G | 0.30 | 0.44 | 0.16 | 0.56 | Nr2f2 | 6 hits | 93kb 5' of TNFSF11 | ||||||||
| 13 | 42475346 | 1 | 1 | rs9594768 | C | A | 0.27 | 0.44 | 0.16 | 0.56 | 5 tissues | ESDR,IPSC,SKIN | 6 hits | 87kb 5' of TNFSF11 | |||||||
| 13 | 42476144 | 1 | 1 | rs34335227 | A | G | 0.27 | 0.44 | 0.16 | 0.56 | 6 altered motifs | 6 hits | 87kb 5' of TNFSF11 | ||||||||
| 13 | 42478744 | 1 | 1 | rs2062305 | G | A | 0.30 | 0.44 | 0.16 | 0.56 | THYM, PANC, BLD | 37 tissues | 4 bound proteins | 1 hit | 7 hits | 84kb 5' of TNFSF11 | |||||
| 13 | 42480866 | 1 | 1 | rs9533122 | A | G | 0.31 | 0.44 | 0.16 | 0.56 | Pitx2 | 6 hits | 82kb 5' of TNFSF11 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 3 | 188683372 | 1 | 1 | rs56116661 | C | T | 0.40 | 0.16 | 0.06 | 0.20 | 13 tissues | 12 tissues | STAT3 | GR | LPP | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 3 | 188683372 | 1 | 1 | rs56116661 | C | T | 0.40 | 0.16 | 0.06 | 0.20 | 13 tissues | 12 tissues | STAT3 | GR | LPP | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 11 | 64329761 | 1 | 1 | rs694739 | A | G | 0.04 | 0.36 | 0.17 | 0.40 | SKIN | 15 tissues | PANC,GI,LNG | 6 altered motifs | 2 hits | 11 hits | 30 hits | 256bp 5' of AP003774.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 73245771 | 1 | 1 | rs6452898 | A | C | 0.50 | 0.34 | 0.16 | 0.37 | ESDR, ESC | GATA,Pbx-1 | RP11-60A8.1 | ||||||||
| 5 | 73245860 | 1 | 1 | rs6452899 | G | A | 0.50 | 0.33 | 0.16 | 0.37 | ESDR, ESC, IPSC | 5 altered motifs | RP11-60A8.1 | ||||||||
| 5 | 73246223 | 1 | 1 | rs12513457 | C | A | 0.48 | 0.34 | 0.16 | 0.37 | 9 tissues | 6 tissues | 9 tissues | NRF1 | Irf,Klf7,Smad3 | RP11-60A8.1 | |||||
| 5 | 73247229 | 1 | 1 | rs9654420 | A | G | 0.49 | 0.34 | 0.16 | 0.37 | ESDR,VAS | HNF4 | RP11-60A8.1 | ||||||||
| 5 | 73247386 | 1 | 1 | rs9654421 | G | T | 0.49 | 0.34 | 0.16 | 0.37 | RP11-60A8.1 | ||||||||||
| 5 | 73248563 | 1 | 1 | rs9654415 | T | C | 0.57 | 0.35 | 0.16 | 0.37 | BCL,E2A,Hic1 | RP11-60A8.1 | |||||||||
| 5 | 73250082 | 1 | 1 | rs7341037 | T | C | 0.54 | 0.35 | 0.16 | 0.37 | GR,Ik-2,SIX5 | RP11-60A8.1 | |||||||||
| 5 | 73255307 | 1 | 1 | rs7702331 | A | G | 0.54 | 0.34 | 0.16 | 0.37 | FAT, SKIN | AP-1,DEC | 2 hits | 1 hit | RP11-60A8.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 7 | 28141510 | 1 | 1 | rs10260837 | C | T | 0.35 | 0.19 | 0.32 | 0.08 | Hoxb13,TATA | 18 hits | JAZF1 | intronic | |||||||
| 7 | 28142687 | 1 | 1 | rs10280937 | T | C | 0.35 | 0.19 | 0.32 | 0.08 | CTCF | p53 | 18 hits | JAZF1 | intronic | ||||||
| 7 | 28145925 | 1 | 1 | rs10281214 | G | C | 0.38 | 0.19 | 0.32 | 0.08 | 17 hits | JAZF1 | intronic | ||||||||
| 7 | 28146500 | 1 | 1 | rs7796417 | G | C | 0.39 | 0.19 | 0.32 | 0.08 | ESDR, PANC, MUS | ESDR | 38 altered motifs | 17 hits | JAZF1 | intronic | |||||
| 7 | 28147515 | 1 | 1 | rs73089302 | G | A | 0.39 | 0.19 | 0.32 | 0.08 | ESDR, BLD | CEBPB,Pou2f2,Pou3f3 | 17 hits | JAZF1 | intronic | ||||||
| 7 | 28147665 | 1 | 1 | rs10263857 | C | G | 0.38 | 0.19 | 0.32 | 0.08 | EBF,Hic1,RXRA | 17 hits | JAZF1 | intronic | |||||||
| 7 | 28148065 | 1 | 1 | rs78693958 | CAT | C | 0.38 | 0.19 | 0.32 | 0.08 | ESDR | 5 altered motifs | 17 hits | JAZF1 | intronic | ||||||
| 7 | 28148351 | 1 | 1 | rs6945537 | G | A | 0.39 | 0.19 | 0.32 | 0.08 | ESDR | AP-1 | 17 hits | JAZF1 | intronic | ||||||
| 7 | 28150502 | 1 | 1 | rs10276381 | C | T | 0.37 | 0.19 | 0.32 | 0.08 | IPSC,BLD,BLD | 18 hits | JAZF1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 56144903 | 1 | 1 | rs71624119 | G | A | 0.03 | 0.14 | 0.02 | 0.25 | 8 tissues | Bbx,DMRT1,STAT | ANKRD55 | intronic | |||||||
| 5 | 56146422 | 1 | 1 | rs10213692 | T | C | 0.04 | 0.15 | 0.02 | 0.25 | 4 altered motifs | ANKRD55 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 25269598 | 1 | 1 | rs13428812 | A | G | 0.30 | 0.26 | 0.26 | 0.35 | 6 tissues | CEBPB,Hsf,STAT | 1 hit | 2 hits | DNMT3A | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 20728500 | 1 | 1 | rs6908425 | T | C | 0.77 | 0.79 | 0.79 | 0.78 | ESC, IPSC | 4 altered motifs | 2 hits | CDKAL1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 8 | 89863690 | 1 | 1 | rs7015630 | T | C | 0.40 | 0.21 | 0.25 | 0.28 | Cdx2,Pou2f2,TCF4 | 1 hit | 424 hits | 3 hits | 37kb 3' of U6 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 16 | 82833851 | 1 | 1 | rs10492862 | C | A | 0.42 | 0.34 | 0.05 | 0.30 | IPSC | Cphx,Pbx-1,Sox | CDH13 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 62324337 | 1 | 1 | rs10865331 | A | G | 0.46 | 0.60 | 0.61 | 0.62 | 4 altered motifs | 3 hits | 219 hits | 1 hit | 59kb 3' of snoU13 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 35246497 | 1 | 1 | rs12255409 | G | A | 0.49 | 0.34 | 0.32 | 0.32 | IPSC | 7 hits | 527bp 5' of CCNY | ||||||||
| 10 | 35246767 | 1 | 1 | rs12242110 | A | G | 0.36 | 0.33 | 0.31 | 0.32 | IPSC | BLD | HDAC2,Irf | 1 hit | 2 hits | 8 hits | 257bp 5' of CCNY | ||||
| 10 | 35249193 | 1 | 1 | rs12246600 | A | C | 0.49 | 0.34 | 0.32 | 0.32 | E2A,Myf | 8 hits | CCNY | intronic | |||||||
| 10 | 35249755 | 1 | 1 | rs12098720 | G | A | 0.50 | 0.34 | 0.32 | 0.32 | Pax-1,p300 | 8 hits | CCNY | intronic | |||||||
| 10 | 35251206 | 1 | 1 | rs34592588 | A | G | 0.50 | 0.34 | 0.32 | 0.32 | 8 hits | CCNY | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 19 | 33240473 | 1 | 1 | rs11669923 | T | G | 0.03 | 0.29 | 0.28 | 0.30 | 8 tissues | ESDR | 15kb 5' of SLC7A10 | ||||||||
| 19 | 33240645 | 1 | 1 | rs17694108 | G | A | 0.03 | 0.29 | 0.28 | 0.30 | LIV | 9 tissues | 4 tissues | CEBPA,Hsf,STAT | 1 hit | 533 hits | 15kb 5' of SLC7A10 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 160877274 | 1 | 1 | rs17387157 | G | A | 0.30 | 0.67 | 0.72 | 0.68 | BLD | 6 tissues | CTCF,RAD21,SMC3 | Hoxc10,Pdx1 | 5 hits | ITLN1 | intronic | ||||
| 1 | 160877620 | 1 | 1 | rs4656955 | A | G | 0.30 | 0.67 | 0.72 | 0.68 | BLD, SPLN | 7 altered motifs | 5 hits | ITLN1 | intronic | ||||||
| 1 | 160878103 | 1 | 1 | rs6427550 | A | G | 0.34 | 0.67 | 0.72 | 0.68 | BLD | 5 hits | ITLN1 | intronic | |||||||
| 1 | 160878108 | 1 | 1 | rs7524351 | T | C | 0.30 | 0.67 | 0.72 | 0.68 | BLD | 5 hits | ITLN1 | intronic | |||||||
| 1 | 160878718 | 1 | 1 | rs35214362 | AT | A | 0.34 | 0.67 | 0.71 | 0.68 | BLD, THYM | 11 altered motifs | ITLN1 | intronic | |||||||
| 1 | 160879147 | 1 | 1 | rs3766356 | T | C | 0.31 | 0.67 | 0.72 | 0.68 | GI | BLD, THYM | BLD,BLD,BLD | 4 altered motifs | 1 hit | 8 hits | ITLN1 | intronic | |||
| 1 | 160879203 | 1 | 1 | rs3766357 | G | A | 0.30 | 0.67 | 0.72 | 0.68 | GI | BLD, THYM | BLD,BLD | RREB-1 | 5 hits | ITLN1 | intronic | ||||
| 1 | 160879270 | 1 | 1 | rs3766359 | G | A | 0.30 | 0.67 | 0.72 | 0.68 | GI | 4 tissues | BLD,BLD | HDAC2 | 5 hits | ITLN1 | intronic | ||||
| 1 | 160879577 | 1 | 1 | rs2274905 | G | T | 0.30 | 0.67 | 0.72 | 0.68 | GI | BLD, THYM, OVRY | Ets,T3R | 1 hit | 8 hits | ITLN1 | intronic | ||||
| 1 | 160881744 | 1 | 1 | rs7532133 | A | G | 0.31 | 0.66 | 0.72 | 0.68 | GI | BLD | Myc,RFX5 | 5 hits | ITLN1 | intronic | |||||
| 1 | 160881774 | 1 | 1 | rs6427551 | C | G | 0.34 | 0.66 | 0.72 | 0.68 | GI | BLD | 4 hits | ITLN1 | intronic | ||||||
| 1 | 160881829 | 1 | 1 | rs10908808 | A | G | 0.34 | 0.66 | 0.72 | 0.68 | 8 altered motifs | 4 hits | ITLN1 | intronic | |||||||
| 1 | 160882036 | 1 | 1 | rs2274907 | A | T | 0.34 | 0.66 | 0.72 | 0.68 | BLD | EGR1 | BDP1,Pax-5,Zic | 2 hits | 4 hits | ITLN1 | missense | ||||
| 1 | 160882232 | 1 | 1 | rs2274909 | C | T | 0.31 | 0.66 | 0.72 | 0.68 | BLD | BLD | 5 hits | ITLN1 | intronic | ||||||
| 1 | 160882256 | 1 | 1 | rs2274910 | T | C | 0.31 | 0.66 | 0.72 | 0.68 | BLD | PTF1-beta | 1 hit | 7 hits | 8 hits | ITLN1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 7 | 148521783 | 1 | 1 | rs2538473 | A | G | 0.62 | 0.64 | 0.83 | 0.64 | BLD, HRT, PLCNT | PLCNT | 1 hit | 69kb 5' of C7orf33 | |||||||
| 7 | 148523356 | 1 | 1 | rs2538470 | A | G | 0.62 | 0.65 | 0.83 | 0.64 | BLD | PLCNT,GI | 4 altered motifs | 1 hit | 67kb 5' of C7orf33 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 119895261 | 1 | 1 | rs2641348 | A | G | 0.39 | 0.12 | 0.03 | 0.11 | BLD, BRST | 4 tissues | Cphx,Hoxb6,Nkx2 | 1363 hits | 6 hits | ADAM30 | missense | ||||
| 1 | 119897406 | 1 | 1 | rs2027447 | T | C | 0.39 | 0.12 | 0.03 | 0.11 | BRN | HNF1,HNF4 | 6 hits | 910bp 5' of ADAM30 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 241797926 | 1 | 1 | rs35320439 | T | C | 0.80 | 0.37 | 0.34 | 0.33 | GI | 9 tissues | HNF4 | 5 hits | GAL3ST2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 21 | 44195678 | 1 | 1 | rs762421 | G | A | 0.88 | 0.45 | 0.49 | 0.61 | 7 tissues | BLD,MUS | HP1-site-factor,Zfp105 | 1 hit | 3 hits | 4 hits | 5.6kb 5' of AP001057.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 382559 | 1 | 1 | rs7773324 | G | A | 0.13 | 0.51 | 0.26 | 0.56 | BLD | Hoxb3,NF-Y,TATA | 9.2kb 5' of IRF4 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 11 | 76590211 | 1 | 1 | rs7926914 | G | T | 0.29 | 0.26 | 0.19 | 0.36 | 10 tissues | 16 altered motifs | 35kb 3' of RP11-672A2.6 | ||||||||
| 11 | 76590272 | 1 | 1 | rs7927894 | C | T | 0.28 | 0.26 | 0.20 | 0.36 | 10 tissues | Pax-4 | 2 hits | 2 hits | 35kb 3' of RP11-672A2.6 | ||||||
| 11 | 76590331 | 1 | 1 | rs7927997 | C | T | 0.24 | 0.26 | 0.20 | 0.36 | 10 tissues | THYM | 4 altered motifs | 1 hit | 35kb 3' of RP11-672A2.6 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 12 | 6381959 | 1 | 1 | rs7954567 | G | A | 0.06 | 0.22 | 0.04 | 0.32 | ESC, IPSC | OVRY | 7 hits | LTBR |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 28391927 | 1 | 1 | rs925255 | C | T | 0.23 | 0.32 | 0.23 | 0.46 | 23 tissues | 43 tissues | 6 bound proteins | Hoxb13,Hoxd10,OTX | 1 hit | 538 hits | 2 hits | AC104695.3 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 13 | 42443894 | 1 | 1 | rs9525625 | T | C | 0.27 | 0.44 | 0.16 | 0.56 | Hic1,Pbx-1,TCF11::MafG | 1 hit | 8 hits | 119kb 5' of TNFSF11 | |||||||
| 13 | 42452525 | 1 | 1 | rs1830790 | G | A | 0.28 | 0.44 | 0.16 | 0.56 | 4 altered motifs | 6 hits | 110kb 5' of TNFSF11 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 3 | 48643620 | 1 | 1 | rs9868809 | C | T | 0.16 | 0.08 | 0.11 | 0.11 | SKIN | SKIN | HNF4 | 31 hits | CELSR3 | synonymous |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 30434902 | 1 | 1 | rs306589 | A | G | 0.16 | 0.51 | 0.39 | 0.61 | 23 tissues | 52 tissues | POL24H8 | Pax-5,Pitx2 | 5 hits | MAP3K8 | intronic | ||||
| 10 | 30438155 | 1 | 1 | rs303448 | G | T | 0.17 | 0.51 | 0.39 | 0.61 | 13 tissues | 17 tissues | 9 tissues | 16 altered motifs | 6 hits | MAP3K8 | intronic | ||||
| 10 | 30439172 | 1 | 1 | rs1042058 | T | C | 0.13 | 0.51 | 0.39 | 0.61 | 4 tissues | POL24H8 | Irf,Lmo2-complex | 1 hit | 258 hits | 5 hits | MAP3K8 | synonymous | |||
| 10 | 30439321 | 1 | 1 | rs2907 | A | G | 0.17 | 0.51 | 0.39 | 0.61 | 8 tissues | BLD | p300 | 5 hits | MAP3K8 | intronic | |||||
| 10 | 30439560 | 1 | 1 | rs303446 | C | T | 0.18 | 0.51 | 0.39 | 0.61 | 8 tissues | BLD | DEC,GATA,Hmx | 4 hits | MAP3K8 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 142099500 | 1 | 1 | rs11167764 | A | C | 0.78 | 0.81 | 0.82 | 0.79 | BLD | Bbx,SRF | 1 hit | 3 hits | 9kb 5' of NDFIP1 | ||||||
| 1 | 1 | rs77110703 | T | G | 0.79 | 0.81 | 0.82 | 0.79 | ADRL, MUS, BLD | BLD,ADRL | ERalpha-a,Esr2,RXRA | 8.2kb 5' of NDFIP1 | |||||||||
| 5 | 142100305 | 1 | 1 | rs10057309 | T | C | 0.78 | 0.81 | 0.82 | 0.79 | ADRL,SKIN | 12 altered motifs | 1 hit | 8.2kb 5' of NDFIP1 | |||||||
| 5 | 142100853 | 1 | 1 | rs7730511 | T | C | 0.79 | 0.81 | 0.82 | 0.79 | BLD, ADRL | 6 altered motifs | 1 hit | 7.7kb 5' of NDFIP1 | |||||||
| 5 | 142100993 | 1 | 1 | rs6580220 | G | A | 0.79 | 0.81 | 0.82 | 0.79 | BLD, ADRL | Rhox11 | 1 hit | 7.5kb 5' of NDFIP1 | |||||||
| 5 | 142104784 | 1 | 1 | rs6887599 | G | A | 0.78 | 0.81 | 0.82 | 0.79 | BLD | 6 tissues | 4 tissues | 5 altered motifs | 3 hits | 3.7kb 5' of NDFIP1 | |||||
| 5 | 142105412 | 1 | 1 | rs891991 | A | T | 0.80 | 0.81 | 0.81 | 0.79 | 4 tissues | 16 altered motifs | 3 hits | 3.1kb 5' of NDFIP1 | |||||||
| 5 | 142108654 | 1 | 1 | rs3761757 | A | C | 0.81 | 0.81 | 0.81 | 0.79 | 24 tissues | PLCNT, GI | 45 tissues | 8 bound proteins | BHLHE40 | 1 hit | NDFIP1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 34988153 | 1 | 1 | rs79749947 | A | T | 0.15 | 0.33 | 0.31 | 0.37 | BRST, SKIN | BRST,BRST | Ets,Evi-1 | 11 hits | 20kb 3' of CUL2 | ||||||
| 10 | 34989921 | 1 | 1 | rs9663401 | G | T | 0.15 | 0.33 | 0.31 | 0.37 | BRST, SKIN, GI | 7 altered motifs | 11 hits | 19kb 3' of CUL2 | |||||||
| 10 | 34990527 | 1 | 1 | rs9787566 | T | A | 0.16 | 0.33 | 0.31 | 0.37 | BRST | 14 altered motifs | 11 hits | 18kb 3' of CUL2 | |||||||
| 10 | 34991326 | 1 | 1 | rs4351760 | A | G | 0.16 | 0.33 | 0.31 | 0.37 | BRST, PLCNT | Ets,Nr2f2 | 11 hits | 17kb 3' of CUL2 | |||||||
| 10 | 34991677 | 1 | 1 | rs4934695 | C | T | 0.16 | 0.33 | 0.31 | 0.37 | 7 tissues | SKIN | Foxl1,Foxp1 | 11 hits | 17kb 3' of CUL2 | ||||||
| 10 | 34992190 | 1 | 1 | rs4934527 | T | A | 0.34 | 0.36 | 0.31 | 0.37 | 9 tissues | 22 tissues | 5 bound proteins | GATA,TAL1 | 11 hits | 16kb 3' of CUL2 | |||||
| 10 | 34996189 | 1 | 1 | rs11597483 | A | G | 0.17 | 0.33 | 0.31 | 0.37 | 4 tissues | 6 tissues | YY1 | NRSF | 11 hits | 12kb 3' of CUL2 | |||||
| 10 | 34996793 | 1 | 1 | rs35317849 | C | A | 0.16 | 0.33 | 0.31 | 0.37 | BLD | PPAR,Rad21 | 11 hits | 12kb 3' of CUL2 | |||||||
| 10 | 34998264 | 1 | 1 | rs4934697 | C | T | 0.16 | 0.33 | 0.31 | 0.37 | ESDR | 4 altered motifs | 11 hits | 10kb 3' of CUL2 | |||||||
| 10 | 34998722 | 1 | 1 | rs17582416 | T | G | 0.23 | 0.33 | 0.31 | 0.37 | SKIN | 5 altered motifs | 1 hit | 11 hits | 9.8kb 3' of CUL2 | ||||||
| 10 | 34999647 | 1 | 1 | rs11597392 | T | C | 0.23 | 0.33 | 0.31 | 0.37 | 4 tissues | ESDR,MUS | USF1 | 4 altered motifs | 11 hits | 8.9kb 3' of CUL2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 73913343 | 1 | 1 | rs2227564 | T | C | 0.98 | 0.75 | 0.70 | 0.77 | BRN | 9 tissues | 9 tissues | CHD2,NF-I | 1 hit | 5 hits | 8 hits | PLAU | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 20 | 59249254 | 1 | 1 | rs259964 | A | G | 0.30 | 0.57 | 0.91 | 0.57 | Crx,Egr-1 | 1 hit | 576 hits | 2 hits | ZNF831 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 17 | 39871147 | 1 | 1 | rs12709365 | A | G | 0.25 | 0.36 | 0.31 | 0.48 | BLD | BLD | BLD | 6 altered motifs | 37 hits | ZPBP2 | intronic | ||||
| 17 | 39871330 | 1 | 1 | rs13380815 | A | G | 0.25 | 0.36 | 0.31 | 0.48 | BLD | BLD | AP-3,Nkx2 | 37 hits | ZPBP2 | intronic | |||||
| 17 | 39873952 | 1 | 1 | rs11870965 | T | A | 0.25 | 0.36 | 0.31 | 0.48 | 4 altered motifs | 1 hit | 40 hits | ZPBP2 | intronic | ||||||
| 17 | 39875421 | 1 | 1 | rs10852935 | C | T | 0.12 | 0.35 | 0.31 | 0.48 | LNG | Hoxb6 | 1 hit | 37 hits | ZPBP2 | synonymous | |||||
| 17 | 39876207 | 1 | 1 | rs34189114 | C | T | 0.12 | 0.35 | 0.31 | 0.48 | AP-1 | 37 hits | ZPBP2 | intronic | |||||||
| 17 | 39876427 | 1 | 1 | rs35736272 | T | C | 0.11 | 0.35 | 0.31 | 0.48 | GR,Rhox11 | 37 hits | ZPBP2 | intronic | |||||||
| 1 | 1 | rs57151617 | A | C | 0.25 | 0.36 | 0.31 | 0.48 | BRST | 9 altered motifs | 16 hits | ZPBP2 | 3'-UTR | ||||||||
| 17 | 39878863 | 1 | 1 | rs9907088 | G | A | 0.24 | 0.36 | 0.31 | 0.48 | Foxk1,Myc,Sox | 1 hit | 39 hits | 966bp 3' of ZPBP2 | |||||||
| 17 | 39879117 | 1 | 1 | rs36038753 | G | T | 0.24 | 0.36 | 0.32 | 0.48 | 4 altered motifs | 37 hits | 1.2kb 3' of ZPBP2 | ||||||||
| 17 | 39879513 | 1 | 1 | rs34074973 | GAGA | G | 0.12 | 0.35 | 0.31 | 0.48 | 5 altered motifs | 15 hits | 1.6kb 3' of ZPBP2 | ||||||||
| 17 | 39880333 | 1 | 1 | rs9904624 | A | G | 0.23 | 0.36 | 0.31 | 0.48 | 38 hits | 2.4kb 3' of ZPBP2 | |||||||||
| 17 | 39883866 | 1 | 1 | rs12232497 | T | C | 0.11 | 0.35 | 0.31 | 0.48 | 4 altered motifs | 39 hits | 6kb 3' of ZPBP2 | ||||||||
| 17 | 39884110 | 1 | 1 | rs12232498 | T | C | 0.24 | 0.36 | 0.31 | 0.48 | 4 altered motifs | 37 hits | 6.2kb 3' of ZPBP2 | ||||||||
| 17 | 39884281 | 1 | 1 | rs12941333 | C | T | 0.24 | 0.36 | 0.31 | 0.48 | Pou2f2,Pou3f3 | 37 hits | 6.4kb 3' of ZPBP2 | ||||||||
| 17 | 39884510 | 1 | 1 | rs2872507 | G | A | 0.24 | 0.36 | 0.31 | 0.48 | BLD | 4 altered motifs | 5 hits | 22 hits | 41 hits | 6.6kb 3' of ZPBP2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 4 | 122240464 | 1 | 1 | rs7657746 | A | G | 0.35 | 0.17 | 0.05 | 0.24 | NF-kappaB | 1 hit | KIAA1109 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 172885194 | 1 | 1 | rs4916283 | G | A | 0.23 | 0.49 | 0.92 | 0.24 | 8 tissues | 34 altered motifs | 1 hit | RP1-15D23.2 | |||||||
| 1 | 172886436 | 1 | 1 | rs68143871 | A | G | 0.30 | 0.49 | 0.92 | 0.24 | 11 tissues | 6 altered motifs | 1 hit | RP1-15D23.2 | |||||||
| 1 | 172889567 | 1 | 1 | rs10912490 | C | T | 0.29 | 0.49 | 0.92 | 0.24 | 5 altered motifs | 1 hit | RP1-15D23.2 | ||||||||
| 1 | 172890895 | 1 | 1 | rs12739009 | A | C | 0.31 | 0.50 | 0.92 | 0.24 | FAC1 | 1 hit | RP1-15D23.2 | ||||||||
| 1 | 172892434 | 1 | 1 | rs2213742 | C | T | 0.30 | 0.49 | 0.92 | 0.24 | 1 hit | RP1-15D23.2 | |||||||||
| 1 | 172892619 | 1 | 1 | rs2213745 | A | G | 0.30 | 0.49 | 0.92 | 0.24 | VAS | 5 altered motifs | 1 hit | RP1-15D23.2 | |||||||
| 1 | 172893094 | 1 | 1 | rs9286879 | A | G | 0.32 | 0.50 | 0.92 | 0.24 | CRVX | 10 tissues | 2 hits | 2 hits | 1 hit | RP1-15D23.2 | |||||
| 1 | 172893240 | 1 | 1 | rs7527462 | C | G | 0.29 | 0.49 | 0.92 | 0.24 | CRVX | 10 tissues | PLCNT,PANC | AIRE | 1 hit | RP1-15D23.2 | |||||
| 1 | 172893799 | 1 | 1 | rs10489276 | C | T | 0.30 | 0.49 | 0.92 | 0.24 | CRVX,VAS | 1 hit | 1 hit | RP1-15D23.2 | |||||||
| 1 | 172894808 | 1 | 1 | rs2157453 | G | A | 0.30 | 0.49 | 0.92 | 0.24 | BLD, SKIN | 12 tissues | BLD,CRVX | GATA1 | 1 hit | 1 hit | 1 hit | RP1-15D23.2 | |||
| 1 | 172894852 | 1 | 1 | rs2157454 | G | A | 0.30 | 0.49 | 0.92 | 0.24 | BLD, SKIN | 12 tissues | CRVX | GATA1 | 5 altered motifs | 1 hit | RP1-15D23.2 | ||||
| 1 | 172895043 | 1 | 1 | rs2187892 | G | A | 0.30 | 0.49 | 0.92 | 0.24 | 5 tissues | 11 tissues | BLD,CRVX | E2F,LBP-1,RXRA | 1 hit | RP1-15D23.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 127134977 | 1 | 1 | rs9491697 | A | G | 0.30 | 0.46 | 0.53 | 0.42 | FAT, MUS, LNG | GATA,Pax-4 | 1 hit | 2 hits | RSPO3 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 102046427 | 1 | 1 | rs10185424 | T | G | 0.76 | 0.62 | 0.69 | 0.56 | 18 tissues | 19 bound proteins | 1 hit | 4 hits | 18kb 3' of IL1R2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 9 | 4981602 | 1 | 1 | rs10758669 | C | A | 0.87 | 0.59 | 0.67 | 0.64 | MUS | LUN-1,Spz1 | 5 hits | 338 hits | 1 hit | 3.4kb 5' of JAK2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 6060049 | 1 | 1 | rs12722489 | C | T | 0.01 | 0.08 | 0.13 | 0.14 | BLD, GI | BLD, HRT, MUS | BLD | ERalpha-a | 3 hits | 1 hit | IL2RA | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 78157942 | 1 | 1 | rs17391694 | C | T | 0.00 | 0.05 | 0.00 | 0.10 | 5 tissues | Nanog | 3 hits | 115 hits | 5 hits | 19kb 3' of GIPC2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 78157942 | 1 | 1 | rs17391694 | C | T | 0.00 | 0.05 | 0.00 | 0.10 | 5 tissues | Nanog | 3 hits | 115 hits | 5 hits | 19kb 3' of GIPC2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 19 | 33240473 | 1 | 1 | rs11669923 | T | G | 0.03 | 0.29 | 0.28 | 0.30 | 8 tissues | ESDR | 15kb 5' of SLC7A10 | ||||||||
| 19 | 33240645 | 1 | 1 | rs17694108 | G | A | 0.03 | 0.29 | 0.28 | 0.30 | LIV | 9 tissues | 4 tissues | CEBPA,Hsf,STAT | 1 hit | 533 hits | 15kb 5' of SLC7A10 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 186900018 | 1 | 1 | rs12720539 | G | GC | 0.10 | 0.30 | 0.47 | 0.51 | FAT, GI, BLD | 6 altered motifs | PLA2G4A | intronic | |||||||
| 1 | 186903322 | 1 | 1 | rs726706 | A | G | 0.09 | 0.30 | 0.47 | 0.51 | 2 hits | PLA2G4A | intronic | ||||||||
| 1 | 186903714 | 1 | 1 | rs10737274 | G | T | 0.10 | 0.30 | 0.47 | 0.51 | BDP1 | 2 hits | PLA2G4A | intronic | |||||||
| 1 | 186905182 | 1 | 1 | rs1977064 | G | A | 0.10 | 0.30 | 0.47 | 0.51 | 17 altered motifs | 2 hits | PLA2G4A | intronic | |||||||
| 1 | 186905876 | 1 | 1 | rs10798068 | A | G | 0.10 | 0.30 | 0.47 | 0.51 | MUS | MAFK | 6 altered motifs | 1 hit | 2 hits | PLA2G4A | intronic | ||||
| 1 | 186906327 | 1 | 1 | rs10798069 | G | T | 0.10 | 0.30 | 0.47 | 0.51 | SKIN | 3 hits | 2 hits | PLA2G4A | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 5523441 | 1 | 1 | rs2083015 | T | G | 0.14 | 0.74 | 0.61 | 0.72 | 4 altered motifs | 26kb 3' of AC107057.1 | |||||||||
| 2 | 5523876 | 1 | 1 | rs11894081 | G | T | 0.14 | 0.74 | 0.61 | 0.72 | Ik-1,Ik-2,Roaz | 1 hit | 26kb 3' of AC107057.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 15 | 38606887 | 1 | 1 | rs72729306 | T | C | 0.33 | 0.13 | 0.03 | 0.19 | ESDR, BLD | 8 altered motifs | 24 hits | 41kb 5' of RASGRP1 | |||||||
| 15 | 38606989 | 1 | 1 | rs16967103 | T | C | 0.29 | 0.12 | 0.03 | 0.19 | ESDR, BLD | LIV,BLD | 1 hit | 1086 hits | 24 hits | 41kb 5' of RASGRP1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 218277871 | 1 | -1 | rs3817266 | C | T | 0.21 | 0.38 | 0.36 | 0.36 | 5 tissues | 4 altered motifs | 81 hits | PNKD | intronic | ||||||
| 2 | 218278050 | 1 | 1 | rs6707559 | C | T | 0.63 | 0.61 | 0.63 | 0.64 | 6 tissues | SKIN | 10 altered motifs | 79 hits | PNKD | intronic | |||||
| 2 | 218278506 | 1 | -1 | rs2292551 | G | A | 0.21 | 0.38 | 0.36 | 0.36 | 6 tissues | SKIN | HEN1,Nr2f2,Pax-5 | 88 hits | PNKD | intronic | |||||
| 1 | -1 | rs63368160 | T | C | 0.21 | 0.38 | 0.36 | 0.36 | 6 tissues | SKIN | AP-1,LBP-1 | 16 hits | PNKD | intronic | |||||||
| 2 | 218281476 | 1 | -1 | rs10932768 | T | A | 0.21 | 0.38 | 0.36 | 0.36 | MUS | Foxd1 | 81 hits | PNKD | intronic | ||||||
| 2 | 218281884 | 1 | -1 | rs7585702 | T | C | 0.21 | 0.38 | 0.36 | 0.36 | GI | 17 tissues | SKIN | 4 altered motifs | 81 hits | PNKD | intronic | ||||
| 2 | 218282145 | 1 | -1 | rs2292554 | T | C | 0.22 | 0.38 | 0.37 | 0.36 | GI, MUS | 19 tissues | THAP1,YY1 | 81 hits | PNKD | 5'-UTR | |||||
| 2 | 218282522 | 1 | -1 | rs10932769 | T | G | 0.21 | 0.38 | 0.36 | 0.36 | 6 tissues | 79 hits | PNKD | intronic | |||||||
| 2 | 218283646 | 1 | -1 | rs6729058 | G | A | 0.21 | 0.38 | 0.36 | 0.36 | GI, MUS | 19 tissues | SKIN | Mef2,THAP1 | 80 hits | PNKD | intronic | ||||
| 2 | 218284440 | 1 | -1 | rs11692780 | A | G | 0.21 | 0.38 | 0.36 | 0.36 | 8 tissues | 21 tissues | 19 tissues | 8 bound proteins | BDP1,NRSF,Sin3Ak-20 | 81 hits | PNKD | intronic | |||
| 2 | 218285488 | 1 | -1 | rs7559416 | A | G | 0.49 | 0.40 | 0.36 | 0.36 | 14 tissues | 15 tissues | 5 tissues | 4 altered motifs | 85 hits | PNKD | intronic | ||||
| 2 | 218285515 | 1 | -1 | rs7559428 | A | G | 0.24 | 0.39 | 0.36 | 0.36 | 14 tissues | 15 tissues | 4 tissues | EBF,GR | 88 hits | PNKD | intronic | ||||
| 2 | 218285584 | 1 | -1 | rs7559525 | A | G | 0.21 | 0.38 | 0.36 | 0.36 | 14 tissues | 15 tissues | 4 tissues | ERalpha-a,Sin3Ak-20 | 88 hits | PNKD | intronic | ||||
| 2 | 218286495 | 1 | 1 | rs2382817 | A | C | 0.62 | 0.61 | 0.63 | 0.64 | 21 tissues | 8 tissues | 13 tissues | RXRA | 1 hit | 547 hits | 86 hits | PNKD | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 113834946 | 1 | 1 | rs2476601 | A | G | 1.00 | 0.96 | 1.00 | 0.90 | BRST, BLD, SKIN | 4 tissues | STAT3 | Ets,NERF1a,PU.1 | 14 hits | 3 hits | 1 hit | PTPN22 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 198029415 | 1 | 1 | rs10196612 | T | C | 0.50 | 0.43 | 0.24 | 0.55 | 4 altered motifs | 4 hits | PLCL1 | intronic | |||||||
| 2 | 198029581 | 1 | 1 | rs10184227 | C | T | 0.48 | 0.43 | 0.24 | 0.55 | ESDR | Pax-5 | 4 hits | PLCL1 | intronic | ||||||
| 2 | 198031347 | 1 | 1 | rs10166845 | A | G | 0.48 | 0.43 | 0.24 | 0.55 | EBF | 3 hits | PLCL1 | intronic | |||||||
| 2 | 198032171 | 1 | 1 | rs6738825 | A | G | 0.51 | 0.43 | 0.24 | 0.55 | ESDR, BLD, BRN | 4 altered motifs | 1 hit | 4 hits | PLCL1 | intronic | |||||
| 2 | 198033620 | 1 | 1 | rs1541953 | A | T | 0.25 | 0.40 | 0.24 | 0.55 | STRM, BRN | PLCNT | RXRA | 1 hit | 4 hits | PLCL1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 7 | 28140937 | 1 | 1 | rs864745 | T | C | 0.21 | 0.41 | 0.21 | 0.54 | 4 tissues | 8 altered motifs | 2 hits | 202 hits | 4 hits | JAZF1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 32977210 | 1 | 1 | rs3129307 | A | G | 0.99 | 0.86 | 0.80 | 0.93 | 22 tissues | BLD,SKIN | NF-AT1 | 9 hits | BRD2 | intronic | |||||
| 6 | 32981027 | 1 | 1 | rs1049526 | C | T | 0.99 | 0.86 | 0.80 | 0.93 | BLD,SKIN | POL24H8,POL2,POL2B | 5 altered motifs | 7 hits | BRD2 | 3'-UTR | |||||
| 6 | 32982647 | 1 | 1 | rs3135033 | C | G | 0.99 | 0.86 | 0.80 | 0.93 | 4 tissues | 9 tissues | BCL3,POL2,POL24H8 | Hoxd8,Pax-5 | 8 hits | 1.1kb 3' of BRD2 | |||||
| 6 | 32991403 | 1 | 1 | rs3129305 | G | C | 0.99 | 0.86 | 0.80 | 0.93 | Irf,ZEB1 | 4 hits | 1 hit | 9.9kb 3' of BRD2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 60959694 | 1 | 1 | rs13003464 | A | G | 0.91 | 0.33 | 0.04 | 0.37 | 7 tissues | HRT,SKIN | 5 altered motifs | 3 hits | 3 hits | 15 hits | PUS10 | intronic | |||
| 2 | 60960280 | 1 | 1 | rs67927699 | G | C | 0.43 | 0.31 | 0.04 | 0.37 | BRST, STRM, SKIN | CTCF,Ets,GATA | 13 hits | PUS10 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 7 | 50228447 | 1 | 1 | rs748374 | C | T | 0.63 | 0.73 | 0.42 | 0.69 | BLD, BRN | BLD, THYM | 6 tissues | 5 altered motifs | 24kb 5' of AC020743.3 | ||||||
| 7 | 50230076 | 1 | 1 | rs1456893 | G | A | 0.63 | 0.73 | 0.42 | 0.69 | 5 tissues | 5 bound proteins | 5 altered motifs | 1 hit | 2 hits | 26kb 5' of AC020743.3 | |||||
| 7 | 50230418 | 1 | 1 | rs2124799 | C | T | 0.63 | 0.73 | 0.42 | 0.69 | BLD | 8 altered motifs | 26kb 5' of AC020743.3 | ||||||||
| 7 | 50240800 | 1 | 1 | rs2168593 | G | A | 0.63 | 0.73 | 0.42 | 0.69 | BLD | 5 altered motifs | 34kb 3' of AC020743.4 | ||||||||
| 7 | 50241943 | 1 | 1 | rs981132 | T | G | 0.63 | 0.73 | 0.42 | 0.69 | 33kb 3' of AC020743.4 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 8 | 125527809 | 1 | 1 | rs1551398 | G | A | 0.13 | 0.53 | 0.36 | 0.63 | BLD | 19 tissues | 16 tissues | PRDM1 | SETDB1 | 1 hit | 1 hit | RP11-136O12.2 | |||
| 8 | 125528848 | 1 | 1 | rs28510097 | C | G | 0.13 | 0.53 | 0.36 | 0.63 | 4 tissues | 15 tissues | 30 tissues | 11 bound proteins | RP11-136O12.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 173899711 | 1 | 1 | rs72810989 | A | G | 0.04 | 0.17 | 0.07 | 0.31 | BRN, HRT | 11 tissues | 4 altered motifs | 3 hits | CPEB4 | intronic | |||||
| 5 | 173899888 | 1 | 1 | rs17694791 | C | T | 0.04 | 0.17 | 0.07 | 0.31 | BRN | 15 tissues | SETDB1 | 3 hits | CPEB4 | intronic | |||||
| 5 | 173901021 | 1 | 1 | rs17694835 | G | T | 0.04 | 0.17 | 0.07 | 0.31 | HRT | 8 tissues | Arid5a,Foxa,STAT | 3 hits | CPEB4 | intronic | |||||
| 5 | 173904848 | 1 | 1 | rs72810995 | A | G | 0.04 | 0.17 | 0.07 | 0.31 | BLD, SKIN, BRN | Mxi1,Pitx2 | 3 hits | CPEB4 | intronic | ||||||
| 5 | 173907216 | 1 | 1 | rs75049939 | T | G | 0.04 | 0.17 | 0.07 | 0.31 | BLD | 10 tissues | 4 altered motifs | 3 hits | CPEB4 | intronic | |||||
| 5 | 173910850 | 1 | 1 | rs17695092 | T | G | 0.04 | 0.17 | 0.07 | 0.31 | STRM, BRN, HRT | 13 altered motifs | 1 hit | 8 hits | 8 hits | CPEB4 | intronic | ||||
| 5 | 173912219 | 1 | 1 | rs7736263 | G | T | 0.04 | 0.17 | 0.07 | 0.31 | 11 tissues | Zic | 11 hits | 13 hits | CPEB4 | intronic | |||||
| 5 | 173913493 | 1 | 1 | rs72812804 | T | G | 0.04 | 0.17 | 0.07 | 0.31 | 9 tissues | 5 altered motifs | 3 hits | CPEB4 | intronic | ||||||
| 5 | 173917150 | 1 | 1 | rs72812805 | T | C | 0.04 | 0.17 | 0.07 | 0.31 | MUS, BLD | 9 tissues | 5 altered motifs | 3 hits | CPEB4 | intronic | |||||
| 5 | 173918020 | 1 | 1 | rs55946741 | A | G | 0.04 | 0.17 | 0.07 | 0.31 | 22 tissues | PANC | 52 tissues | 12 bound proteins | Irf | 3 hits | CPEB4 | intronic | |||
| 5 | 173921153 | 1 | 1 | rs10516107 | G | A | 0.04 | 0.17 | 0.07 | 0.31 | 6 tissues | 4 altered motifs | 5 hits | 8 hits | CPEB4 | intronic | |||||
| 5 | 173922837 | 1 | 1 | rs1484803 | A | G | 0.04 | 0.17 | 0.07 | 0.31 | 15 tissues | BLD,SKIN,HRT | 6 altered motifs | 9 hits | 8 hits | CPEB4 | intronic | ||||
| 5 | 173923402 | 1 | 1 | rs966544 | A | G | 0.04 | 0.17 | 0.07 | 0.31 | HRT | 19 tissues | HRT,BLD,BLD | EBF1 | AP-1,BATF | 9 hits | 8 hits | CPEB4 | intronic | ||
| 5 | 173923987 | 1 | 1 | rs72812811 | G | A | 0.04 | 0.17 | 0.07 | 0.31 | BLD, VAS, BONE | 19 tissues | 14 tissues | 5 altered motifs | 3 hits | CPEB4 | intronic | ||||
| 5 | 173924078 | 1 | 1 | rs17695555 | C | T | 0.04 | 0.17 | 0.07 | 0.31 | 5 tissues | 19 tissues | 7 tissues | 3 hits | CPEB4 | intronic | |||||
| 5 | 173926511 | 1 | 1 | rs747472 | T | C | 0.04 | 0.17 | 0.07 | 0.31 | STRM, BRN | 15 tissues | 15 tissues | 4 bound proteins | 13 hits | 8 hits | CPEB4 | intronic | |||
| 5 | 173930203 | 1 | 1 | rs113932433 | G | A | 0.04 | 0.17 | 0.07 | 0.31 | 7 tissues | 3 hits | CPEB4 | intronic | |||||||
| 5 | 173930807 | 1 | 1 | rs56281418 | T | C | 0.04 | 0.17 | 0.07 | 0.31 | 4 tissues | 3 hits | CPEB4 | intronic | |||||||
| 5 | 173931334 | 1 | 1 | rs7705507 | C | T | 0.06 | 0.17 | 0.07 | 0.31 | 8 tissues | 4 altered motifs | 3 hits | CPEB4 | intronic | ||||||
| 5 | 173935455 | 1 | 1 | rs6861681 | G | A | 0.04 | 0.17 | 0.07 | 0.31 | LNG | 5 tissues | HP1-site-factor,Hlx1,Pou6f1 | 1 hit | 6 hits | 8 hits | CPEB4 | intronic | |||
| 5 | 173935723 | 1 | 1 | rs72812826 | C | T | 0.04 | 0.17 | 0.07 | 0.31 | LNG | 4 tissues | 7 altered motifs | 3 hits | CPEB4 | intronic | |||||
| 5 | 173938307 | 1 | 1 | rs56245789 | T | C | 0.04 | 0.17 | 0.07 | 0.31 | BLD | ERalpha-a,GATA,Zbtb3 | 3 hits | CPEB4 | intronic | ||||||
| 5 | 173940583 | 1 | 1 | rs56184817 | T | C | 0.04 | 0.17 | 0.07 | 0.31 | LNG, BLD | 8 tissues | LNG | 4 altered motifs | 3 hits | CPEB4 | intronic | ||||
| 5 | 173945622 | 1 | 1 | rs72812832 | G | A | 0.04 | 0.17 | 0.07 | 0.31 | 7 tissues | 7 altered motifs | 3 hits | CPEB4 | intronic | ||||||
| 5 | 173946140 | 1 | 1 | rs17696147 | T | C | 0.04 | 0.17 | 0.07 | 0.31 | 5 tissues | 3 hits | CPEB4 | intronic | |||||||
| 5 | 173946945 | 1 | 1 | rs56163845 | A | G | 0.04 | 0.17 | 0.07 | 0.31 | GI, PANC, LIV | GI | Myc,RXRA | 3 hits | CPEB4 | intronic | |||||
| 5 | 173947757 | 1 | 1 | rs72812842 | C | T | 0.04 | 0.17 | 0.07 | 0.31 | GI, LIV | CEBPB,CEBPG,p300 | 3 hits | CPEB4 | intronic | ||||||
| 5 | 173948254 | 1 | 1 | rs55924019 | A | G | 0.04 | 0.17 | 0.07 | 0.31 | GI | Hbp1 | 3 hits | CPEB4 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 90246276 | 1 | 1 | rs62408224 | A | G | 0.09 | 0.28 | 0.05 | 0.35 | BLD, HRT | Hoxa13,Hoxb13,Nkx3 | BACH2 | intronic | |||||||
| 6 | 90246690 | 1 | 1 | rs62408225 | A | G | 0.11 | 0.28 | 0.04 | 0.35 | BLD | 19 altered motifs | BACH2 | intronic | |||||||
| 6 | 90248783 | 1 | 1 | rs905670 | G | A | 0.09 | 0.28 | 0.05 | 0.35 | BLD, SKIN, THYM | 8 altered motifs | BACH2 | intronic | |||||||
| 6 | 90255452 | 1 | 1 | rs62408227 | A | G | 0.16 | 0.28 | 0.05 | 0.35 | BLD, THYM | Mxi1,SIX5,TBX5 | BACH2 | intronic | |||||||
| 6 | 90256696 | 1 | 1 | rs11752685 | A | C | 0.11 | 0.28 | 0.05 | 0.35 | MUS | 11 tissues | Foxd1,Foxo,HDAC2 | BACH2 | intronic | ||||||
| 6 | 90257478 | 1 | 1 | rs1604831 | G | A | 0.10 | 0.28 | 0.05 | 0.35 | 10 tissues | MAFK | COMP1 | BACH2 | intronic | ||||||
| 6 | 90259502 | 1 | 1 | rs1604830 | T | C | 0.08 | 0.28 | 0.05 | 0.35 | BLD | 4 altered motifs | BACH2 | intronic | |||||||
| 6 | 90260493 | 1 | 1 | rs2089126 | A | G | 0.17 | 0.28 | 0.05 | 0.35 | BLD | Foxl1,GR,Mef2 | BACH2 | intronic | |||||||
| 6 | 90263440 | 1 | 1 | rs1847472 | C | A | 0.11 | 0.28 | 0.05 | 0.35 | 5 tissues | Ncx,PLZF,TATA | 2 hits | 387 hits | BACH2 | intronic | |||||
| 6 | 90266271 | 1 | 1 | rs56106243 | C | T | 0.11 | 0.28 | 0.05 | 0.35 | BLD | BLD, THYM | BACH2 | intronic | |||||||
| 6 | 90266515 | 1 | 1 | rs55885254 | T | C | 0.09 | 0.28 | 0.05 | 0.35 | BLD | BLD, THYM | Myb | BACH2 | intronic | ||||||
| 6 | 90266890 | 1 | 1 | rs62408233 | G | A | 0.09 | 0.28 | 0.05 | 0.35 | BLD | 4 tissues | Nkx2,PU.1 | BACH2 | intronic | ||||||
| 6 | 90268664 | 1 | 1 | rs62408235 | T | C | 0.05 | 0.27 | 0.01 | 0.35 | BLD | BLD, THYM | 4 altered motifs | BACH2 | intronic | ||||||
| 6 | 90270429 | 1 | 1 | rs62408236 | C | T | 0.16 | 0.28 | 0.05 | 0.35 | BLD, THYM | Pax-3,Pax-5 | BACH2 | intronic | |||||||
| 6 | 90270626 | 1 | 1 | rs62408237 | C | G | 0.17 | 0.28 | 0.05 | 0.35 | BLD | 7 altered motifs | BACH2 | intronic | |||||||
| 6 | 90271600 | 1 | 1 | rs55771973 | T | G | 0.09 | 0.28 | 0.05 | 0.35 | BLD | BLD | NF-I,p53 | BACH2 | intronic | ||||||
| 6 | 90271938 | 1 | 1 | rs45553631 | C | T | 0.16 | 0.28 | 0.05 | 0.35 | BLD | BLD, THYM, SPLN | 5 tissues | BACH2 | 5'-UTR | ||||||
| 6 | 90272668 | 1 | 1 | rs969577 | T | C | 0.05 | 0.27 | 0.01 | 0.35 | BLD | BLD, THYM, SPLN | 4 altered motifs | BACH2 | intronic | ||||||
| 6 | 90274131 | 1 | 1 | rs905671 | A | T | 0.16 | 0.28 | 0.05 | 0.35 | BLD, THYM | BLD, MUS, THYM | BLD,BLD,THYM | KAP1 | BCL,CEBPG | BACH2 | intronic | ||||
| 6 | 90276634 | 1 | 1 | rs6454805 | A | G | 0.19 | 0.28 | 0.05 | 0.35 | BLD | BLD | 6 altered motifs | BACH2 | intronic | ||||||
| 6 | 90276840 | 1 | 1 | rs6899623 | A | G | 0.19 | 0.28 | 0.05 | 0.35 | BLD | BLD | Foxp1,HDAC2 | BACH2 | intronic | ||||||
| 6 | 90277030 | 1 | 1 | rs2325292 | T | C | 0.17 | 0.28 | 0.05 | 0.35 | BLD | BLD | Mef2,SIX5 | BACH2 | intronic | ||||||
| 6 | 90277793 | 1 | 1 | rs2134814 | C | G | 0.12 | 0.28 | 0.05 | 0.35 | MUS | BLD, THYM, MUS | HRT | Evi-1,Osr | BACH2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 17 | 39871147 | 1 | 1 | rs12709365 | A | G | 0.25 | 0.36 | 0.31 | 0.48 | BLD | BLD | BLD | 6 altered motifs | 37 hits | ZPBP2 | intronic | ||||
| 17 | 39871330 | 1 | 1 | rs13380815 | A | G | 0.25 | 0.36 | 0.31 | 0.48 | BLD | BLD | AP-3,Nkx2 | 37 hits | ZPBP2 | intronic | |||||
| 17 | 39873952 | 1 | 1 | rs11870965 | T | A | 0.25 | 0.36 | 0.31 | 0.48 | 4 altered motifs | 1 hit | 40 hits | ZPBP2 | intronic | ||||||
| 17 | 39875421 | 1 | 1 | rs10852935 | C | T | 0.12 | 0.35 | 0.31 | 0.48 | LNG | Hoxb6 | 1 hit | 37 hits | ZPBP2 | synonymous | |||||
| 17 | 39876207 | 1 | 1 | rs34189114 | C | T | 0.12 | 0.35 | 0.31 | 0.48 | AP-1 | 37 hits | ZPBP2 | intronic | |||||||
| 17 | 39876427 | 1 | 1 | rs35736272 | T | C | 0.11 | 0.35 | 0.31 | 0.48 | GR,Rhox11 | 37 hits | ZPBP2 | intronic | |||||||
| 1 | 1 | rs57151617 | A | C | 0.25 | 0.36 | 0.31 | 0.48 | BRST | 9 altered motifs | 16 hits | ZPBP2 | 3'-UTR | ||||||||
| 17 | 39878863 | 1 | 1 | rs9907088 | G | A | 0.24 | 0.36 | 0.31 | 0.48 | Foxk1,Myc,Sox | 1 hit | 39 hits | 966bp 3' of ZPBP2 | |||||||
| 17 | 39879117 | 1 | 1 | rs36038753 | G | T | 0.24 | 0.36 | 0.32 | 0.48 | 4 altered motifs | 37 hits | 1.2kb 3' of ZPBP2 | ||||||||
| 17 | 39879513 | 1 | 1 | rs34074973 | GAGA | G | 0.12 | 0.35 | 0.31 | 0.48 | 5 altered motifs | 15 hits | 1.6kb 3' of ZPBP2 | ||||||||
| 17 | 39880333 | 1 | 1 | rs9904624 | A | G | 0.23 | 0.36 | 0.31 | 0.48 | 38 hits | 2.4kb 3' of ZPBP2 | |||||||||
| 17 | 39883866 | 1 | 1 | rs12232497 | T | C | 0.11 | 0.35 | 0.31 | 0.48 | 4 altered motifs | 39 hits | 6kb 3' of ZPBP2 | ||||||||
| 17 | 39884110 | 1 | 1 | rs12232498 | T | C | 0.24 | 0.36 | 0.31 | 0.48 | 4 altered motifs | 37 hits | 6.2kb 3' of ZPBP2 | ||||||||
| 17 | 39884281 | 1 | 1 | rs12941333 | C | T | 0.24 | 0.36 | 0.31 | 0.48 | Pou2f2,Pou3f3 | 37 hits | 6.4kb 3' of ZPBP2 | ||||||||
| 17 | 39884510 | 1 | 1 | rs2872507 | G | A | 0.24 | 0.36 | 0.31 | 0.48 | BLD | 4 altered motifs | 5 hits | 22 hits | 41 hits | 6.6kb 3' of ZPBP2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 7961913 | 1 | 1 | rs35675666 | G | T | 0.26 | 0.15 | 0.07 | 0.17 | 24 tissues | 50 tissues | 12 bound proteins | 6 altered motifs | 2 hits | 4 hits | PARK7 | intronic | |||
| 1 | 7962137 | 1 | 1 | rs3766606 | G | T | 0.38 | 0.15 | 0.07 | 0.17 | 24 tissues | 36 tissues | NFKB,POL24H8,POL2 | NRSF,Sin3Ak-20 | 591 hits | 8 hits | PARK7 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 233275771 | 1 | 1 | rs3792109 | G | A | 0.20 | 0.36 | 0.33 | 0.54 | 5 altered motifs | 2 hits | 1 hit | 9 hits | SCARNA5 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| X | 113634280 | 1 | 1 | rs5929166 | G | A | 0.00 | 0.02 | 0.00 | 0.02 | IPSC | 4 altered motifs | 16kb 5' of RP5-964N17.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 12 | 6381959 | 1 | 1 | rs7954567 | G | A | 0.06 | 0.22 | 0.04 | 0.32 | ESC, IPSC | OVRY | 7 hits | LTBR |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 1 | rs9279411 | CA | C,CAG | 8 tissues | 14 tissues | 4 tissues | VWA7 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 90246276 | 1 | 1 | rs62408224 | A | G | 0.09 | 0.28 | 0.05 | 0.35 | BLD, HRT | Hoxa13,Hoxb13,Nkx3 | BACH2 | intronic | |||||||
| 6 | 90246690 | 1 | 1 | rs62408225 | A | G | 0.11 | 0.28 | 0.04 | 0.35 | BLD | 19 altered motifs | BACH2 | intronic | |||||||
| 6 | 90248783 | 1 | 1 | rs905670 | G | A | 0.09 | 0.28 | 0.05 | 0.35 | BLD, SKIN, THYM | 8 altered motifs | BACH2 | intronic | |||||||
| 6 | 90255452 | 1 | 1 | rs62408227 | A | G | 0.16 | 0.28 | 0.05 | 0.35 | BLD, THYM | Mxi1,SIX5,TBX5 | BACH2 | intronic | |||||||
| 6 | 90256696 | 1 | 1 | rs11752685 | A | C | 0.11 | 0.28 | 0.05 | 0.35 | MUS | 11 tissues | Foxd1,Foxo,HDAC2 | BACH2 | intronic | ||||||
| 6 | 90257478 | 1 | 1 | rs1604831 | G | A | 0.10 | 0.28 | 0.05 | 0.35 | 10 tissues | MAFK | COMP1 | BACH2 | intronic | ||||||
| 6 | 90259502 | 1 | 1 | rs1604830 | T | C | 0.08 | 0.28 | 0.05 | 0.35 | BLD | 4 altered motifs | BACH2 | intronic | |||||||
| 6 | 90260493 | 1 | 1 | rs2089126 | A | G | 0.17 | 0.28 | 0.05 | 0.35 | BLD | Foxl1,GR,Mef2 | BACH2 | intronic | |||||||
| 6 | 90263440 | 1 | 1 | rs1847472 | C | A | 0.11 | 0.28 | 0.05 | 0.35 | 5 tissues | Ncx,PLZF,TATA | 2 hits | 387 hits | BACH2 | intronic | |||||
| 6 | 90266271 | 1 | 1 | rs56106243 | C | T | 0.11 | 0.28 | 0.05 | 0.35 | BLD | BLD, THYM | BACH2 | intronic | |||||||
| 6 | 90266515 | 1 | 1 | rs55885254 | T | C | 0.09 | 0.28 | 0.05 | 0.35 | BLD | BLD, THYM | Myb | BACH2 | intronic | ||||||
| 6 | 90266890 | 1 | 1 | rs62408233 | G | A | 0.09 | 0.28 | 0.05 | 0.35 | BLD | 4 tissues | Nkx2,PU.1 | BACH2 | intronic | ||||||
| 6 | 90268664 | 1 | 1 | rs62408235 | T | C | 0.05 | 0.27 | 0.01 | 0.35 | BLD | BLD, THYM | 4 altered motifs | BACH2 | intronic | ||||||
| 6 | 90270429 | 1 | 1 | rs62408236 | C | T | 0.16 | 0.28 | 0.05 | 0.35 | BLD, THYM | Pax-3,Pax-5 | BACH2 | intronic | |||||||
| 6 | 90270626 | 1 | 1 | rs62408237 | C | G | 0.17 | 0.28 | 0.05 | 0.35 | BLD | 7 altered motifs | BACH2 | intronic | |||||||
| 6 | 90271600 | 1 | 1 | rs55771973 | T | G | 0.09 | 0.28 | 0.05 | 0.35 | BLD | BLD | NF-I,p53 | BACH2 | intronic | ||||||
| 6 | 90271938 | 1 | 1 | rs45553631 | C | T | 0.16 | 0.28 | 0.05 | 0.35 | BLD | BLD, THYM, SPLN | 5 tissues | BACH2 | 5'-UTR | ||||||
| 6 | 90272668 | 1 | 1 | rs969577 | T | C | 0.05 | 0.27 | 0.01 | 0.35 | BLD | BLD, THYM, SPLN | 4 altered motifs | BACH2 | intronic | ||||||
| 6 | 90274131 | 1 | 1 | rs905671 | A | T | 0.16 | 0.28 | 0.05 | 0.35 | BLD, THYM | BLD, MUS, THYM | BLD,BLD,THYM | KAP1 | BCL,CEBPG | BACH2 | intronic | ||||
| 6 | 90276634 | 1 | 1 | rs6454805 | A | G | 0.19 | 0.28 | 0.05 | 0.35 | BLD | BLD | 6 altered motifs | BACH2 | intronic | ||||||
| 6 | 90276840 | 1 | 1 | rs6899623 | A | G | 0.19 | 0.28 | 0.05 | 0.35 | BLD | BLD | Foxp1,HDAC2 | BACH2 | intronic | ||||||
| 6 | 90277030 | 1 | 1 | rs2325292 | T | C | 0.17 | 0.28 | 0.05 | 0.35 | BLD | BLD | Mef2,SIX5 | BACH2 | intronic | ||||||
| 6 | 90277793 | 1 | 1 | rs2134814 | C | G | 0.12 | 0.28 | 0.05 | 0.35 | MUS | BLD, THYM, MUS | HRT | Evi-1,Osr | BACH2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 3 | 53099133 | 1 | 1 | rs2581828 | C | G | 0.26 | 0.61 | 0.73 | 0.61 | ZNF263 | 84 hits | RFT1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 155908941 | 1 | 1 | rs670523 | A | G | 0.02 | 0.54 | 0.14 | 0.64 | BLD, SKIN, LNG | 6 altered motifs | 1 hit | 273 hits | 34 hits | RIT1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 60997124 | 1 | 1 | rs10181042 | C | T | 0.57 | 0.33 | 0.04 | 0.41 | GATA,TCF4 | 1 hit | 6 hits | 37 hits | PUS10 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 11 | 73152652 | 1 | 1 | rs11235667 | A | G | 0.00 | 0.00 | 0.11 | 0.00 | BLD | 10 tissues | 9 tissues | POL2,YY1 | Foxa | 1 hit | 10kb 5' of FCHSD2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 3 | 18665341 | 1 | 1 | rs35893269 | A | G | 0.09 | 0.24 | 0.02 | 0.34 | 29kb 5' of AC105750.1 | ||||||||||
| 3 | 18665366 | 1 | 1 | rs13073817 | G | A | 0.09 | 0.24 | 0.02 | 0.34 | Hmx,Pou1f1,ZID | 1 hit | 29kb 5' of AC105750.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 3428255 | 1 | 1 | rs6916403 | C | T | 0.16 | 0.37 | 0.47 | 0.37 | SKIN | 14 tissues | 4 altered motifs | SLC22A23 | intronic | ||||||
| 6 | 3428801 | 1 | 1 | rs9405202 | A | G | 0.09 | 0.36 | 0.47 | 0.37 | 6 tissues | GI | SLC22A23 | intronic | |||||||
| 6 | 3428892 | 1 | 1 | rs34756502 | G | C | 0.09 | 0.36 | 0.47 | 0.37 | 6 tissues | GCNF | SLC22A23 | intronic | |||||||
| 6 | 3429064 | 1 | 1 | rs34541033 | T | C | 0.09 | 0.36 | 0.47 | 0.37 | 6 tissues | Pou1f1,RFX5,YY1 | SLC22A23 | intronic | |||||||
| 6 | 3429220 | 1 | 1 | rs36052964 | T | A | 0.10 | 0.36 | 0.47 | 0.37 | 4 tissues | 4 altered motifs | SLC22A23 | intronic | |||||||
| 6 | 3429894 | 1 | 1 | rs6937621 | G | A | 0.08 | 0.35 | 0.47 | 0.37 | BRST, GI, THYM | 11 altered motifs | SLC22A23 | intronic | |||||||
| 6 | 3429957 | 1 | 1 | rs6917962 | A | T | 0.09 | 0.36 | 0.47 | 0.37 | BRST, GI, THYM | Hsf,Pax-1 | SLC22A23 | intronic | |||||||
| 6 | 3430048 | 1 | 1 | rs6939192 | C | T | 0.09 | 0.36 | 0.47 | 0.37 | GI, THYM | 8 altered motifs | SLC22A23 | intronic | |||||||
| 6 | 3430253 | 1 | 1 | rs6938209 | G | A | 0.09 | 0.36 | 0.47 | 0.37 | ESDR, GI, THYM | SLC22A23 | intronic | ||||||||
| 6 | 3430350 | 1 | 1 | rs6939748 | C | T | 0.10 | 0.36 | 0.47 | 0.37 | ESDR, GI, THYM | ESC | 12 altered motifs | SLC22A23 | intronic | ||||||
| 6 | 3430601 | 1 | 1 | rs6938957 | G | A | 0.09 | 0.35 | 0.47 | 0.37 | 5 tissues | GR,NRSF,TFII-I | SLC22A23 | intronic | |||||||
| 6 | 3430655 | 1 | 1 | rs6923831 | T | A | 0.09 | 0.36 | 0.47 | 0.37 | 5 tissues | TATA | SLC22A23 | intronic | |||||||
| 6 | 3432967 | 1 | 1 | rs1077845 | G | T | 0.09 | 0.36 | 0.47 | 0.37 | SKIN,MUS,SKIN | NF-I | SLC22A23 | intronic | |||||||
| 6 | 3433084 | 1 | 1 | rs17309827 | T | G | 0.09 | 0.36 | 0.47 | 0.37 | SKIN | 10 tissues | SKIN,MUS,SKIN | CTCF | ERalpha-a | 1 hit | SLC22A23 | intronic | |||
| 6 | 3433106 | 1 | 1 | rs13206690 | T | G | 0.09 | 0.36 | 0.47 | 0.37 | SKIN | 10 tissues | SKIN,MUS,SKIN | CTCF | TATA | SLC22A23 | intronic | ||||
| 6 | 3433113 | 1 | 1 | rs13206693 | T | C | 0.09 | 0.36 | 0.47 | 0.37 | SKIN | 10 tissues | 5 tissues | CTCF | Mrg1::Hoxa9 | SLC22A23 | intronic | ||||
| 6 | 3433656 | 1 | 1 | rs4518545 | T | A | 0.09 | 0.36 | 0.47 | 0.37 | 7 tissues | SLC22A23 | intronic | ||||||||
| 6 | 3433691 | 1 | 1 | rs2326231 | T | G | 0.09 | 0.36 | 0.47 | 0.37 | 7 tissues | BRCA1,Osf2 | SLC22A23 | intronic | |||||||
| 6 | 3434008 | 1 | 1 | rs4959830 | G | A | 0.09 | 0.36 | 0.47 | 0.37 | Nrf1 | SLC22A23 | intronic | ||||||||
| 6 | 3434261 | 1 | 1 | rs2031895 | T | C | 0.10 | 0.36 | 0.47 | 0.37 | ATF3,Zbtb3 | SLC22A23 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 21 | 15432901 | 1 | 1 | rs1736135 | T | C | 0.07 | 0.40 | 0.19 | 0.40 | 5 tissues | Ik-3,SP1,Spz1 | 2 hits | 4 hits | 31kb 5' of AJ006998.2 | ||||||
| 21 | 15433357 | 1 | 1 | rs1297256 | C | T | 0.55 | 0.44 | 0.19 | 0.40 | 5 tissues | ESDR | ERALPHA_A,FOXA1 | 5 altered motifs | 4 hits | 31kb 5' of AJ006998.2 | |||||
| 21 | 15434710 | 1 | 1 | rs972010 | T | C | 0.46 | 0.42 | 0.19 | 0.40 | BLD | MAFF,MAFK | BRCA1,Maf,p300 | 4 hits | 32kb 5' of AJ006998.2 | ||||||
| 21 | 15435430 | 1 | 1 | rs1297259 | A | G | 0.58 | 0.43 | 0.19 | 0.40 | BLD | BRST | 4 hits | 33kb 5' of AJ006998.2 | |||||||
| 21 | 15435901 | 1 | 1 | rs1736018 | A | G | 0.17 | 0.41 | 0.19 | 0.40 | BLD | 14 altered motifs | 3 hits | 34kb 5' of AJ006998.2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 3 | 53099133 | 1 | 1 | rs2581828 | C | G | 0.26 | 0.61 | 0.73 | 0.61 | ZNF263 | 84 hits | RFT1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 7819003 | 1 | 1 | rs2797685 | C | T | 0.33 | 0.18 | 0.48 | 0.19 | 7 altered motifs | 1 hit | 3 hits | RP3-467L1.4 | intronic | ||||||
| 1 | 7823557 | 1 | 1 | rs697689 | G | A | 0.29 | 0.18 | 0.48 | 0.19 | HNF4,Nkx2 | RP3-467L1.4 | intronic | ||||||||
| 1 | 7825294 | 1 | 1 | rs697691 | A | G | 0.33 | 0.18 | 0.48 | 0.19 | DMRT7,Mef2,SRF | RP3-467L1.4 | intronic | ||||||||
| 1 | 7829881 | 1 | 1 | rs2640908 | C | T | 0.30 | 0.18 | 0.48 | 0.19 | BLD | BLD | 3 hits | PER3 | synonymous |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 2 | 62486398 | 1 | 1 | rs6545946 | C | T | 0.37 | 0.19 | 0.15 | 0.22 | 4 tissues | 20 tissues | 11 tissues | 4 altered motifs | 1 hit | 3 hits | 4.8kb 5' of Metazoa_SRP |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 62644946 | 1 | 1 | rs10822041 | T | C | 0.97 | 0.81 | 0.91 | 0.73 | GATA,Smad,p53 | ZNF365 | intronic | ||||||||
| 10 | 62645886 | 1 | 1 | rs10761654 | A | G | 0.97 | 0.81 | 0.91 | 0.73 | 5 altered motifs | 1 hit | ZNF365 | intronic | |||||||
| 10 | 62648085 | 1 | 1 | rs4237304 | C | T | 0.97 | 0.81 | 0.91 | 0.73 | BLD | BLD | 12 altered motifs | ZNF365 | intronic | ||||||
| 10 | 62648091 | 1 | 1 | rs4237305 | T | A | 0.97 | 0.81 | 0.91 | 0.73 | BLD | BLD | 10 altered motifs | ZNF365 | intronic | ||||||
| 10 | 62654300 | 1 | 1 | rs7071642 | G | A | 0.97 | 0.81 | 0.91 | 0.73 | BLD | BLD | SKIN | Nrf1 | 1 hit | 1 hit | ZNF365 | intronic | |||
| 10 | 62654404 | 1 | 1 | rs7089612 | T | C | 0.97 | 0.81 | 0.91 | 0.73 | BLD | BLD | BLD | 4 altered motifs | 1 hit | ZNF365 | intronic | ||||
| 10 | 62655424 | 1 | 1 | rs7076156 | A | G | 0.97 | 0.81 | 0.91 | 0.73 | BLD | BLD | 6 tissues | 4 bound proteins | 1 hit | 1 hit | ZNF365 | intronic | |||
| 10 | 62657529 | 1 | 1 | rs7086072 | C | T | 0.97 | 0.81 | 0.91 | 0.73 | ESDR, BRN | 4 altered motifs | ZNF365 | intronic | |||||||
| 10 | 62664524 | 1 | 1 | rs10822047 | T | G | 0.97 | 0.81 | 0.91 | 0.73 | Pax-6,Spdef | 1 hit | ZNF365 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 149255943 | 1 | 1 | rs7758080 | A | G | 0.44 | 0.26 | 0.45 | 0.27 | BLD | 4 tissues | BLD,LNG | 5 altered motifs | 1 hit | TAB2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 11 | 57435536 | 1 | 1 | rs11229030 | C | T | 0.37 | 0.71 | 0.85 | 0.62 | FAT, LIV, LNG | PLCNT | 1 hit | 4 hits | 11 hits | 8kb 5' of SLC43A3 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 13 | 40981588 | 1 | 1 | rs78076494 | G | A | 0.05 | 0.06 | 0.26 | 0.02 | 14 tissues | FAT, SKIN, GI | 25 tissues | CEBPB,CMYC,MAX | TCF11::MafG | ELF1 | intronic | ||||
| 13 | 40983974 | 1 | 1 | rs7329174 | A | G | 0.05 | 0.06 | 0.26 | 0.02 | 4 tissues | 19 tissues | 14 tissues | RP58,TAL1,ZBRK1 | 3 hits | ELF1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 197758512 | 1 | 1 | rs1998598 | A | G | 0.14 | 0.27 | 0.19 | 0.28 | BLD | Sox | 1 hit | 1 hit | RP11-448G4.4 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 18 | 79460616 | 1 | 1 | rs7236492 | C | T | 0.01 | 0.17 | 0.00 | 0.16 | BLD, MUS | 16 tissues | 16 tissues | 11 bound proteins | 4 altered motifs | 2 hits | NFATC1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 19 | 33266156 | 1 | 1 | rs736289 | T | C | 0.69 | 0.30 | 0.47 | 0.39 | BLD | MUS | LBP-1,LXR,NF-I | 1 hit | 1 hit | 34kb 3' of CEBPA |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 7 | 50264865 | 1 | 1 | rs1456896 | C | T | 0.58 | 0.72 | 0.42 | 0.68 | BLD | BLD, THYM | 5 tissues | HNF4 | 2 hits | 321 hits | 9.9kb 3' of AC020743.4 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 108666024 | 1 | 1 | rs147856773 | T | TGTG | 5 tissues | 4 altered motifs | FOXO3 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 113834946 | 1 | 1 | rs2476601 | A | G | 1.00 | 0.96 | 1.00 | 0.90 | BRST, BLD, SKIN | 4 tissues | STAT3 | Ets,NERF1a,PU.1 | 14 hits | 3 hits | 1 hit | PTPN22 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 159830120 | 1 | 1 | rs34687326 | G | A | 0.00 | 0.05 | 0.00 | 0.11 | 13 tissues | ESDR,MUS,MUS | TATA | SLAMF8 | missense |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 20728500 | 1 | 1 | rs6908425 | T | C | 0.77 | 0.79 | 0.79 | 0.78 | ESC, IPSC | 4 altered motifs | 2 hits | CDKAL1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 8 | 89863690 | 1 | 1 | rs7015630 | T | C | 0.40 | 0.21 | 0.25 | 0.28 | Cdx2,Pou2f2,TCF4 | 1 hit | 424 hits | 3 hits | 37kb 3' of U6 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 33794327 | 1 | 1 | rs1359781 | T | C | 0.23 | 0.33 | 0.75 | 0.37 | 5 tissues | 7 altered motifs | 28 hits | 345bp 3' of MLN | |||||||
| 6 | 33796256 | 1 | 1 | rs751728 | C | T | 0.26 | 0.34 | 0.75 | 0.37 | ESDR, ESC, IPSC | DMRT2,Pax-4 | 1 hit | 26 hits | MLN | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 20812357 | 1 | 1 | rs9358372 | G | A | 0.67 | 0.60 | 0.47 | 0.64 | 11 tissues | CRVX | NF-Y,SP1 | 1 hit | 187 hits | CDKAL1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 8 | 73095112 | 1 | 1 | rs12677663 | G | T | 0.81 | 0.60 | 0.83 | 0.61 | BRST, OVRY, GI | 8 tissues | PLZF | 1 hit | 9 hits | SBSPON |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 14719265 | 1 | 1 | rs17119 | G | A | 0.52 | 0.69 | 0.90 | 0.77 | BLD | 11 tissues | 7 altered motifs | 1 hit | 482 hits | 73kb 3' of U6 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 22 | 36862461 | 1 | 1 | rs4821544 | T | C | 0.59 | 0.26 | 0.11 | 0.34 | BLD, FAT, GI | 6 tissues | 17 tissues | 22 bound proteins | 4 altered motifs | 1 hit | 8 hits | 6 hits | CTA-833B7.2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 19 | 48705608 | 1 | 1 | rs504963 | G | A | 0.52 | 0.38 | 0.01 | 0.46 | SKIN, GI, LIV | KID | Ets,GR,Hbp1 | 1 hit | 3 hits | 25 hits | FUT2 | 3'-UTR | |||
| 19 | 48705721 | 1 | 1 | rs632111 | A | G | 0.45 | 0.38 | 0.01 | 0.46 | SKIN, GI, LIV | SKIN,GI,KID | 4 altered motifs | 1 hit | 1 hit | 29 hits | FUT2 | 3'-UTR |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 11 | 65882513 | 1 | -1 | rs687672 | T | C | 0.53 | 0.79 | 0.58 | 0.82 | BLD, SKIN | OVRY | 4 hits | 117 hits | CTSW | ||||||
| 11 | 65884359 | 1 | -1 | rs658938 | A | G | 0.53 | 0.79 | 0.57 | 0.82 | 11 tissues | BLD,BLD | NF-I | 107 hits | FIBP | intronic | |||||
| 11 | 65885771 | 1 | 1 | rs568617 | C | T | 0.48 | 0.21 | 0.43 | 0.18 | 5 tissues | 6 tissues | BDP1,ERalpha-a | 821 hits | 113 hits | FIBP | intronic | ||||
| 11 | 65885838 | 1 | 1 | rs694994 | T | C | 0.47 | 0.21 | 0.43 | 0.18 | 5 tissues | BLD,BLD,MUS | GCNF,Hsf,KAP1 | 10 hits | 115 hits | FIBP | intronic | ||||
| 11 | 65887194 | 1 | 1 | rs677931 | G | C | 0.48 | 0.22 | 0.43 | 0.18 | 6 tissues | 19 tissues | GI,LNG | Maf,NRSF | 106 hits | FIBP | intronic | ||||
| 11 | 65887312 | 1 | 1 | rs693824 | A | G | 0.48 | 0.21 | 0.43 | 0.18 | 6 tissues | 19 tissues | ESDR | 17 altered motifs | 106 hits | FIBP | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 6052734 | 1 | 1 | rs61839660 | C | T | 0.00 | 0.05 | 0.00 | 0.08 | BLD, THYM | 12 tissues | 11 tissues | 11 bound proteins | 8 altered motifs | 1 hit | IL2RA | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 4 | 48361228 | 1 | 1 | rs7438704 | A | G | 0.44 | 0.54 | 0.48 | 0.64 | 5 tissues | 15 tissues | 6 tissues | Foxa,GCNF,STAT | 228 hits | 3 hits | SLAIN2 | intronic | |||
| 4 | 48361966 | 1 | 1 | rs6837335 | A | G | 0.44 | 0.54 | 0.48 | 0.64 | 8 tissues | Hbp1,RORalpha1 | 1 hit | 3 hits | SLAIN2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 21430496 | 1 | 1 | rs71559680 | CTAG | CCAT | Hmbox1,TATA | 75kb 3' of RP1-135L22.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 102585213 | 1 | 1 | rs10574546 | TTC | T | 0.09 | 0.10 | 0.02 | 0.05 | 8 altered motifs | LINC00492 | intronic | ||||||||
| 5 | 102590659 | 1 | 1 | rs13361792 | G | A | 0.13 | 0.10 | 0.02 | 0.05 | ESC, IPSC | BRST,SKIN,BRST | DMRT5,Gm397,Mtf1 | LINC00492 | intronic | ||||||
| 5 | 102590733 | 1 | 1 | rs13357560 | C | T | 0.13 | 0.10 | 0.02 | 0.05 | SKIN,BRST | 6 altered motifs | LINC00492 | intronic | |||||||
| 5 | 102591246 | 1 | 1 | rs6870270 | G | C | 0.13 | 0.10 | 0.02 | 0.05 | IPSC, BRST | 6 altered motifs | LINC00492 | intronic | |||||||
| 5 | 102593445 | 1 | 1 | rs6885940 | G | T | 0.08 | 0.10 | 0.02 | 0.05 | LIV | LINC00492 | intronic | ||||||||
| 5 | 102598153 | 1 | 1 | rs77696592 | G | A | 0.09 | 0.09 | 0.02 | 0.05 | 4 altered motifs | LINC00492 | intronic | ||||||||
| 5 | 102601609 | 1 | 1 | rs10059604 | G | A | 0.09 | 0.09 | 0.02 | 0.05 | 13 altered motifs | LINC00492 | intronic | ||||||||
| 5 | 102611094 | 1 | 1 | rs7705924 | A | G | 0.08 | 0.10 | 0.02 | 0.05 | 4 altered motifs | 1 hit | LINC00492 | intronic | |||||||
| 5 | 102611988 | 1 | 1 | rs10069964 | G | A | 0.14 | 0.10 | 0.02 | 0.05 | SKIN | LUN-1 | LINC00492 | intronic | |||||||
| 5 | 102628224 | 1 | 1 | rs112913025 | C | A | 0.14 | 0.10 | 0.02 | 0.05 | 10 tissues | Mef2,TFIIA | LINC00491 | ||||||||
| 5 | 102628398 | 1 | 1 | rs74729906 | C | T | 0.14 | 0.10 | 0.02 | 0.05 | STRM | 10 tissues | 4 altered motifs | LINC00491 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 7 | 26846266 | 1 | 1 | rs10270187 | C | G | 0.14 | 0.20 | 0.11 | 0.22 | 4 altered motifs | 13 hits | SKAP2 | intronic | |||||||
| 7 | 26846849 | 1 | 1 | rs10251839 | C | T | 0.14 | 0.20 | 0.11 | 0.22 | Myf | 11 hits | SKAP2 | intronic | |||||||
| 7 | 26847996 | 1 | 1 | rs3801812 | C | T | 0.14 | 0.20 | 0.11 | 0.22 | Pax-4 | 13 hits | SKAP2 | intronic | |||||||
| 7 | 26848323 | 1 | 1 | rs10272190 | T | A | 0.14 | 0.20 | 0.11 | 0.22 | 4 altered motifs | 13 hits | SKAP2 | intronic | |||||||
| 7 | 26848510 | 1 | 1 | rs66552416 | TC | T | 0.15 | 0.20 | 0.11 | 0.22 | Pou6f1,TEF | 11 hits | SKAP2 | intronic | |||||||
| 7 | 26848536 | 1 | 1 | rs10272457 | T | C | 0.14 | 0.20 | 0.11 | 0.22 | 8 altered motifs | 13 hits | SKAP2 | intronic | |||||||
| 7 | 26848658 | 1 | 1 | rs10272603 | T | C | 0.14 | 0.20 | 0.11 | 0.22 | RXRA | 11 hits | SKAP2 | intronic | |||||||
| 7 | 26849299 | 1 | 1 | rs6461979 | T | C | 0.01 | 0.19 | 0.11 | 0.22 | 5 altered motifs | 14 hits | SKAP2 | intronic | |||||||
| 7 | 26850243 | 1 | 1 | rs17376018 | A | G | 0.18 | 0.20 | 0.11 | 0.22 | 5 tissues | SKIN,BLD | CEBPB,p300 | 11 hits | SKAP2 | intronic | |||||
| 7 | 26850827 | 1 | 1 | rs4722647 | G | C | 0.15 | 0.19 | 0.11 | 0.22 | FAT, BLD, SKIN | BLD | CHD2,Pax-4 | 11 hits | SKAP2 | intronic | |||||
| 7 | 26850953 | 1 | 1 | rs3934268 | G | C | 0.15 | 0.20 | 0.11 | 0.22 | FAT, BLD, SKIN | 13 altered motifs | 11 hits | SKAP2 | intronic | ||||||
| 7 | 26851053 | 1 | 1 | rs2031811 | T | C | 0.15 | 0.20 | 0.11 | 0.22 | BLD, SKIN | 6 altered motifs | 14 hits | SKAP2 | intronic | ||||||
| 7 | 26851397 | 1 | 1 | rs2030136 | T | C | 0.15 | 0.20 | 0.10 | 0.22 | 4 altered motifs | 13 hits | SKAP2 | intronic | |||||||
| 7 | 26852046 | 1 | 1 | rs7804356 | T | C | 0.15 | 0.20 | 0.11 | 0.22 | GR | 1 hit | 3 hits | 14 hits | SKAP2 | intronic | |||||
| 7 | 26852706 | 1 | 1 | rs73069533 | G | A | 0.01 | 0.19 | 0.11 | 0.22 | Ik-2,Irf | 11 hits | SKAP2 | intronic | |||||||
| 7 | 26852821 | 1 | 1 | rs10486483 | G | A | 0.15 | 0.20 | 0.11 | 0.22 | 4 altered motifs | 1 hit | 225 hits | 14 hits | SKAP2 | intronic | |||||
| 7 | 26852912 | 1 | 1 | rs3801810 | G | A | 0.15 | 0.20 | 0.11 | 0.22 | 10 altered motifs | 14 hits | SKAP2 | intronic | |||||||
| 7 | 26853698 | 1 | 1 | rs3823928 | T | C | 0.15 | 0.20 | 0.11 | 0.22 | 4 tissues | ADRL | 5 altered motifs | 11 hits | SKAP2 | intronic | |||||
| 7 | 26853738 | 1 | 1 | rs7791513 | A | C | 0.15 | 0.20 | 0.11 | 0.22 | 4 tissues | BLD,ADRL | UF1H3BETA | 14 hits | SKAP2 | intronic | |||||
| 7 | 26853905 | 1 | 1 | rs3213853 | T | C | 0.15 | 0.20 | 0.11 | 0.22 | 7 tissues | 34 tissues | 5 bound proteins | 11 hits | SKAP2 | intronic | |||||
| 7 | 26854504 | 1 | 1 | rs6461980 | T | G | 0.15 | 0.20 | 0.11 | 0.22 | 6 tissues | LNG,MUS,BRST | Evi-1,GATA,IRC900814 | 11 hits | SKAP2 | intronic | |||||
| 7 | 26855241 | 1 | 1 | rs12536145 | A | T | 0.15 | 0.20 | 0.11 | 0.22 | BLD, BRST | 8 tissues | 10 tissues | Pou1f1,Pou3f3,TATA | 11 hits | SKAP2 | intronic | ||||
| 7 | 26855461 | 1 | 1 | rs10256250 | A | T | 0.15 | 0.20 | 0.11 | 0.22 | 11 tissues | AP-1 | 14 hits | SKAP2 | intronic | ||||||
| 7 | 26855837 | 1 | 1 | rs3801809 | G | A | 0.15 | 0.20 | 0.11 | 0.22 | 6 tissues | 5 tissues | 6 tissues | Ets,SIX5,YY1 | 11 hits | SKAP2 | intronic | ||||
| 7 | 26856193 | 1 | 1 | rs3839808 | TA | T | 0.15 | 0.20 | 0.11 | 0.22 | 7 tissues | 4 tissues | 4 tissues | 6 altered motifs | 10 hits | SKAP2 | intronic | ||||
| 7 | 26856936 | 1 | 1 | rs3801808 | T | A | 0.15 | 0.20 | 0.11 | 0.22 | 7 tissues | 7 tissues | 4 tissues | GATA | 14 hits | SKAP2 | intronic | ||||
| 7 | 26857820 | 1 | 1 | rs3801807 | T | C | 0.15 | 0.20 | 0.11 | 0.22 | 17 tissues | 10 tissues | 33 tissues | Pax-4,Zic | 2 hits | 14 hits | SKAP2 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 10 | 131373856 | 1 | 1 | rs10734105 | G | A | 0.50 | 0.67 | 0.86 | 0.66 | p300 | 1 hit | 62kb 5' of TCERG1L |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 17 | 27542007 | 1 | 1 | rs10775412 | A | C | 0.21 | 0.28 | 0.69 | 0.32 | LNG,PLCNT,CRVX | NRSF | SP1,Zfp410 | 7 hits | KSR1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 1 | 191588971 | 1 | 1 | rs1954603 | C | T | 0.56 | 0.81 | 0.87 | 0.92 | IPSC | BRCA1 | 1 hit | 270kb 3' of RP11-541F9.1 | |||||||
| 1 | 191590226 | 1 | 1 | rs10801047 | A | T | 0.57 | 0.81 | 0.87 | 0.92 | Evi-1,Foxp1,TATA | 1 hit | 2 hits | 268kb 3' of RP11-541F9.1 | |||||||
| 1 | 191598900 | 1 | -1 | rs4845287 | T | C | 0.37 | 0.17 | 0.13 | 0.08 | 1 hit | 260kb 3' of RP11-541F9.1 | |||||||||
| 1 | 191601578 | 1 | -1 | rs1892290 | C | T | 0.37 | 0.17 | 0.13 | 0.08 | BRST, BLD | TCF4 | 257kb 3' of RP11-541F9.1 | ||||||||
| 1 | 191602427 | 1 | -1 | rs7520824 | T | C | 0.37 | 0.17 | 0.13 | 0.08 | BLD | 256kb 3' of RP11-541F9.1 | |||||||||
| 1 | 191605501 | 1 | -1 | rs58591914 | G | A | 0.39 | 0.17 | 0.13 | 0.08 | 20 altered motifs | 253kb 3' of RP11-541F9.1 | |||||||||
| 1 | 191606774 | 1 | -1 | rs16833617 | A | G | 0.39 | 0.17 | 0.13 | 0.08 | ESC | Foxa,Foxj2,Foxp1 | 252kb 3' of RP11-541F9.1 | ||||||||
| 1 | 191608464 | 1 | -1 | rs6665749 | A | G | 0.37 | 0.17 | 0.13 | 0.08 | 4 tissues | 6 tissues | FOSL2 | 21 altered motifs | 250kb 3' of RP11-541F9.1 | ||||||
| 1 | 191614497 | 1 | -1 | rs12033585 | G | A | 0.47 | 0.17 | 0.13 | 0.08 | 4 altered motifs | 244kb 3' of RP11-541F9.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 17 | 42418754 | 1 | 1 | rs11871801 | A | C | 0.30 | 0.16 | 0.10 | 0.24 | FAT, VAS, GI | 10 tissues | SKIN | 1 hit | 23 hits | PTRF | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 3420172 | 1 | 1 | rs13204048 | T | C | 0.26 | 0.36 | 0.47 | 0.38 | 15 tissues | 28 tissues | 5 bound proteins | Maf | SLC22A23 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 18 | 12774895 | 1 | -1 | rs888270 | G | A | 0.01 | 0.11 | 0.16 | 0.15 | BLD, THYM | BLD | Dobox4 | 10 hits | RP11-973H7.1 | ||||||
| 18 | 12775592 | 1 | 1 | rs2847260 | C | T | 0.80 | 0.86 | 0.84 | 0.85 | 4 tissues | BLD,THYM | 8 altered motifs | 10 hits | RP11-973H7.1 | ||||||
| 18 | 12775852 | 1 | 1 | rs2542147 | G | T | 0.80 | 0.86 | 0.84 | 0.85 | 5 tissues | 5 tissues | SIX5,p300 | 10 hits | RP11-973H7.1 | ||||||
| 18 | 12777574 | 1 | 1 | rs2542148 | C | G | 0.82 | 0.86 | 0.84 | 0.85 | 14 tissues | LNG | 4 tissues | 11 hits | 1.7kb 5' of RP11-973H7.1 | ||||||
| 18 | 12778716 | 1 | 1 | rs2847278 | C | T | 0.83 | 0.87 | 0.84 | 0.85 | 8 altered motifs | 12 hits | 2.8kb 5' of RP11-973H7.1 | ||||||||
| 18 | 12779019 | 1 | 1 | rs2542149 | G | A | 0.83 | 0.87 | 0.84 | 0.85 | IPSC | CTCF,RAD21 | Zfx | 12 hits | 3.1kb 5' of RP11-973H7.1 | ||||||
| 18 | 12779343 | 1 | 1 | rs2847280 | A | G | 0.83 | 0.87 | 0.84 | 0.85 | IPSC | ESDR,IPSC | 5 altered motifs | 12 hits | 3.4kb 5' of RP11-973H7.1 | ||||||
| 18 | 12779764 | 1 | 1 | rs2542150 | G | C | 0.83 | 0.87 | 0.84 | 0.85 | IPSC | IPSC | AP-1,NRSF,Pax-8 | 12 hits | 3.8kb 5' of RP11-973H7.1 | ||||||
| 18 | 12779948 | 1 | 1 | rs2542151 | G | T | 0.83 | 0.87 | 0.84 | 0.85 | Egr-1,Ets,GR | 6 hits | 12 hits | 4kb 5' of RP11-973H7.1 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 7 | 100825743 | 1 | 1 | rs314313 | T | C | 0.31 | 0.20 | 0.03 | 0.32 | 22 tissues | BLD, THYM, SPLN | 11 tissues | PU1 | 7 altered motifs | 2 hits | 11 hits | EPHB4 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 111518524 | 1 | 1 | rs35876947 | TC | T | 0.05 | 0.06 | 0.00 | 0.06 | BLD | 7 altered motifs | TRAF3IP2-AS1 | intronic | |||||||
| 6 | 111521444 | 1 | 1 | rs71562296 | G | A | 0.17 | 0.08 | 0.00 | 0.06 | BLD | Hand1,Mrg1::Hoxa9,Myb | 14 hits | TRAF3IP2-AS1 | intronic | ||||||
| 6 | 111521822 | 1 | 1 | rs6939657 | G | A | 0.17 | 0.08 | 0.00 | 0.06 | 4 tissues | OVRY | 6 altered motifs | 16 hits | TRAF3IP2-AS1 | intronic | |||||
| 6 | 111523004 | 1 | 1 | rs34863440 | A | G | 0.17 | 0.08 | 0.00 | 0.06 | 7 tissues | 7 altered motifs | 15 hits | TRAF3IP2-AS1 | intronic | ||||||
| 6 | 111525822 | 1 | 1 | rs35931461 | G | A | 0.01 | 0.06 | 0.00 | 0.06 | BRN | 6 altered motifs | 8 hits | TRAF3IP2-AS1 | intronic | ||||||
| 6 | 111526988 | 1 | 1 | rs3851228 | A | T | 0.17 | 0.08 | 0.00 | 0.06 | BLD | DMRT3,Pbx-1 | 1 hit | 382 hits | 16 hits | TRAF3IP2-AS1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 72398072 | 1 | 1 | rs4703855 | C | T | 0.04 | 0.27 | 0.59 | 0.34 | 7 tissues | ESDR,ESDR,IPSC | E4BP4,NRSF | 2 hits | 38kb 3' of PTCD2 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 22 | 41035338 | 1 | 1 | rs4820425 | C | A | 0.12 | 0.54 | 0.06 | 0.31 | BLD | LBP-1,Zfp410 | 1 hit | 35 hits | 10kb 5' of Y_RNA |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 177361569 | 1 | 1 | rs4976646 | T | C | 0.60 | 0.36 | 0.27 | 0.34 | BLD, SKIN | 8 tissues | BLD,BLD | 4 altered motifs | 225 hits | 33 hits | RGS14 | intronic | |||
| 5 | 177361621 | 1 | 1 | rs4976647 | A | C | 0.36 | 0.35 | 0.26 | 0.34 | BLD | 9 tissues | BLD | THAP1 | 31 hits | RGS14 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 13 | 40121855 | 1 | 1 | rs915286 | G | A | 0.39 | 0.42 | 0.25 | 0.55 | 6 tissues | 4 tissues | LUN-1,Obox6,PU.1 | 60kb 5' of LINC00332 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 4 | 101944147 | 1 | 1 | rs13126505 | G | A | 0.00 | 0.03 | 0.00 | 0.06 | ESC, ESDR | 1 hit | 528 hits | BANK1 | intronic |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 17 | 34266646 | 1 | 1 | rs3091315 | A | G | 0.41 | 0.47 | 0.62 | 0.32 | FAT, BLD | 5 altered motifs | 1 hit | 363 hits | 3.6kb 5' of CCL7 | ||||||
| 17 | 34266955 | 1 | 1 | rs3091316 | G | A | 0.26 | 0.46 | 0.62 | 0.32 | BLD | Gmeb1,Mef2,Pou2f2 | 2 hits | 3.3kb 5' of CCL7 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 5 | 132067045 | 1 | 1 | rs3091338 | C | T | 0.13 | 0.31 | 0.00 | 0.37 | PPAR,RXRA | 1 hit | 2 hits | 49 hits | 3.8kb 3' of IL3 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 6 | 105987150 | 1 | 1 | rs6568421 | A | G | 0.17 | 0.19 | 0.00 | 0.29 | 6 tissues | 5 tissues | Nkx2 | 2 hits | 82kb 3' of 7SK | ||||||
| 6 | 105987394 | 1 | 1 | rs7746082 | G | C | 0.01 | 0.18 | 0.00 | 0.29 | 5 tissues | MUS,MUS,SKIN | Cphx,HNF4 | 1 hit | 272 hits | 83kb 3' of 7SK |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 7 | 45859651 | 1 | 1 | rs75764599 | G | A | 0.00 | 0.03 | 0.00 | 0.02 | 10 altered motifs | 16kb 3' of U6 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 13 | 42343725 | 1 | 1 | rs80244186 | T | C | 0.04 | 0.11 | 0.14 | 0.12 | BLD | IPSC | 4 altered motifs | 20kb 3' of AKAP11 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 7 | 99161494 | 1 | 1 | rs9297145 | C | A | 0.46 | 0.73 | 0.90 | 0.71 | LNG | Hoxa13,Hoxb13 | 1 hit | 977 hits | 2 hits | 12kb 3' of KPNA7 |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 3 | 49659364 | 1 | 1 | rs11718165 | A | G | 0.25 | 0.23 | 0.06 | 0.33 | IPSC, MUS | Evi-1,p300 | 12 hits | 63 hits | BSN | intronic | |||||
| 3 | 49660026 | 1 | 1 | rs9836291 | G | A | 0.35 | 0.23 | 0.06 | 0.33 | IPSC, ADRL, PANC | MUS | 5 altered motifs | 62 hits | BSN | intronic | |||||
| 3 | 49664550 | 1 | 1 | rs9858542 | G | A | 0.24 | 0.23 | 0.06 | 0.33 | 4 tissues | Mrg | 3 hits | 12 hits | 63 hits | BSN | synonymous | ||||
| 3 | 49668079 | 1 | 1 | rs9823546 | T | A | 0.24 | 0.23 | 0.06 | 0.33 | 14 tissues | 62 hits | BSN | 3'-UTR |
| chr | pos (hg38) | LD (r²) | LD (D') | variant | Ref | Alt | AFR freq | AMR freq | ASN freq | EUR freq | SiPhy cons | Promoter histone marks | Enhancer histone marks | DNAse | Proteins bound | Motifs changed | NHGRI/EBI GWAS hits | GRASP QTL hits | Selected eQTL hits | GENCODE genes | dbSNP func annot |
| 3 | 49659364 | 1 | 1 | rs11718165 | A | G | 0.25 | 0.23 | 0.06 | 0.33 | IPSC, MUS | Evi-1,p300 | 12 hits | 63 hits | BSN | intronic | |||||
| 3 | 49660026 | 1 | 1 | rs9836291 | G | A | 0.35 | 0.23 | 0.06 | 0.33 | IPSC, ADRL, PANC | MUS | 5 altered motifs | 62 hits | BSN | intronic | |||||
| 3 | 49664550 | 1 | 1 | rs9858542 | G | A | 0.24 | 0.23 | 0.06 | 0.33 | 4 tissues | Mrg | 3 hits | 12 hits | 63 hits | BSN | synonymous | ||||
| 3 | 49668079 | 1 | 1 | rs9823546 | T | A | 0.24 | 0.23 | 0.06 | 0.33 | 14 tissues | 62 hits | BSN | 3'-UTR |
Query SNP enhancer summary:
NOTE: Background for GWAS SNPs is still based on Haploreg v4.0 and will be updated to reflect v4.1
| Cell | Observed | Expected (all SNPs) | Expected (GWAS SNPs) | Binomial p (all SNPs) | Binomial p (GWAS SNPs) |
| E017 LNG.IMR90 (IMR90 fetal lung fibroblasts Cell Line) | 51 | 18.2 | 33.8 | 0 | 0.002371 |
| E002 ESC.WA7 (ES-WA7 Cells) | 12 | 5.7 | 9.9 | 0.013145 | 0.29051 |
| E008 ESC.H9 (H9 Cells) | 12 | 7 | 12.8 | 0.052092 | 0.631055 |
| E001 ESC.I3 (ES-I3 Cells) | 27 | 15.9 | 25.4 | 0.00587 | 0.400282 |
| E015 ESC.HUES6 (HUES6 Cells) | 22 | 16.3 | 24.7 | 0.099033 | 0.742042 |
| E014 ESC.HUES48 (HUES48 Cells) | 25 | 15.2 | 21.9 | 0.011415 | 0.274693 |
| E016 ESC.HUES64 (HUES64 Cells) | 23 | 14.6 | 23.4 | 0.023752 | 0.564674 |
| E003 ESC.H1 (H1 Cells) | 21 | 13.3 | 23.3 | 0.029416 | 0.720159 |
| E024 ESC.4STAR (ES-UCSF4 Cells) | 35 | 16.2 | 28.6 | 2.3E-5 | 0.125797 |
| E020 IPSC.20B (iPS-20b Cells) | 20 | 12 | 18 | 0.019209 | 0.343459 |
| E019 IPSC.18 (iPS-18 Cells) | 26 | 15.3 | 22.5 | 0.006746 | 0.250903 |
| E018 IPSC.15b (iPS-15b Cells) | 25 | 14.5 | 23.1 | 0.006653 | 0.371458 |
| E021 IPSC.DF.6.9 (iPS DF 6.9 Cells) | 20 | 6.8 | 14.4 | 2.3E-5 | 0.091583 |
| E022 IPSC.DF.19.11 (iPS DF 19.11 Cells) | 37 | 15.8 | 29.4 | 2.0E-6 | 0.090167 |
| E007 ESDR.H1.NEUR.PROG (H1 Derived Neuronal Progenitor Cultured Cells) | 17 | 8.1 | 16.3 | 0.003987 | 0.461477 |
| E009 ESDR.H9.NEUR.PROG (H9 Derived Neuronal Progenitor Cultured Cells) | 13 | 11.5 | 20.6 | 0.366472 | 0.972895 |
| E010 ESDR.H9.NEUR (H9 Derived Neuron Cultured Cells) | 22 | 14.5 | 24.2 | 0.036384 | 0.705236 |
| E013 ESDR.CD56.MESO (hESC Derived CD56+ Mesoderm Cultured Cells) | 40 | 13.2 | 25.8 | 0 | 0.004327 |
| E012 ESDR.CD56.ECTO (hESC Derived CD56+ Ectoderm Cultured Cells) | 27 | 12.2 | 21.9 | 0.000136 | 0.154616 |
| E011 ESDR.CD184.ENDO (hESC Derived CD184+ Endoderm Cultured Cells) | 30 | 13.2 | 24.8 | 3.6E-5 | 0.164004 |
| E004 ESDR.H1.BMP4.MESO (H1 BMP4 Derived Mesendoderm Cultured Cells) | 17 | 7.4 | 12.6 | 0.001593 | 0.132859 |
| E005 ESDR.H1.BMP4.TROP (H1 BMP4 Derived Trophoblast Cultured Cells) | 42 | 14.9 | 29.6 | 0 | 0.015023 |
| E006 ESDR.H1.MSC (H1 Derived Mesenchymal Stem Cells) | 53 | 16.1 | 29.4 | 0 | 2.7E-5 |
| E062 BLD.PER.MONUC.PC (Primary mononuclear cells from peripheral blood) | 46 | 4.8 | 11 | 0 | 0 |
| E034 BLD.CD3.PPC (Primary T cells from peripheral blood) | 68 | 14.5 | 23.4 | 0 | 0 |
| E045 BLD.CD4.CD25I.CD127.TMEMPC (Primary T cells effector/memory enriched from peripheral blood) | 43 | 6.2 | 11.4 | 0 | 0 |
| E033 BLD.CD3.CPC (Primary T cells from cord blood) | 50 | 10.2 | 16.6 | 0 | 0 |
| E044 BLD.CD4.CD25.CD127M.TREGPC (Primary T regulatory cells from peripheral blood) | 43 | 8.2 | 15 | 0 | 0 |
| E043 BLD.CD4.CD25M.TPC (Primary T helper cells from peripheral blood) | 74 | 14 | 22.9 | 0 | 0 |
| E039 BLD.CD4.CD25M.CD45RA.NPC (Primary T helper naive cells from peripheral blood) | 53 | 12.5 | 19.6 | 0 | 0 |
| E041 BLD.CD4.CD25M.IL17M.PL.TPC (Primary T helper cells PMA-I stimulated) | 70 | 14.6 | 22.7 | 0 | 0 |
| E042 BLD.CD4.CD25M.IL17P.PL.TPC (Primary T helper 17 cells PMA-I stimulated) | 51 | 11.1 | 20.4 | 0 | 0 |
| E040 BLD.CD4.CD25M.CD45RO.MPC (Primary T helper memory cells from peripheral blood 1) | 56 | 11.9 | 20.3 | 0 | 0 |
| E037 BLD.CD4.MPC (Primary T helper memory cells from peripheral blood 2) | 61 | 13.3 | 22.3 | 0 | 0 |
| E048 BLD.CD8.MPC (Primary T CD8+ memory cells from peripheral blood) | 56 | 10.3 | 18.3 | 0 | 0 |
| E038 BLD.CD4.NPC (Primary T helper naive cells from peripheral blood) | 59 | 11 | 18.1 | 0 | 0 |
| E047 BLD.CD8.NPC (Primary T CD8+ naive cells from peripheral blood) | 71 | 12.4 | 22.3 | 0 | 0 |
| E029 BLD.CD14.PC (Primary monocytes from peripheral blood) | 95 | 18 | 31.8 | 0 | 0 |
| E031 BLD.CD19.CPC (Primary B cells from cord blood) | 53 | 11.1 | 19.3 | 0 | 0 |
| E035 BLD.CD34.PC (Primary hematopoietic stem cells) | 60 | 12.1 | 22.3 | 0 | 0 |
| E051 BLD.MOB.CD34.PC.M (Primary hematopoietic stem cells G-CSF-mobilized Male) | 55 | 16.5 | 28.2 | 0 | 2.0E-6 |
| E050 BLD.MOB.CD34.PC.F (Primary hematopoietic stem cells G-CSF-mobilized Female) | 74 | 17.2 | 30.5 | 0 | 0 |
| E036 BLD.CD34.CC (Primary hematopoietic stem cells short term culture) | 72 | 15.7 | 28.9 | 0 | 0 |
| E032 BLD.CD19.PPC (Primary B cells from peripheral blood) | 76 | 16.1 | 27.9 | 0 | 0 |
| E046 BLD.CD56.PC (Primary Natural Killer cells from peripheral blood) | 77 | 14.2 | 24.7 | 0 | 0 |
| E030 BLD.CD15.PC (Primary neutrophils from peripheral blood) | 67 | 12.2 | 20.3 | 0 | 0 |
| E026 STRM.MRW.MSC (Bone Marrow Derived Cultured Mesenchymal Stem Cells) | 47 | 14.6 | 25.9 | 0 | 7.1E-5 |
| E049 STRM.CHON.MRW.DR.MSC (Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells) | 62 | 17.3 | 32.4 | 0 | 1.0E-6 |
| E025 FAT.ADIP.DR.MSC (Adipose Derived Mesenchymal Stem Cell Cultured Cells) | 69 | 23.6 | 39.4 | 0 | 4.0E-6 |
| E023 FAT.MSC.DR.ADIP (Mesenchymal Stem Cell Derived Adipocyte Cultured Cells) | 38 | 17.6 | 29.7 | 1.0E-5 | 0.072582 |
| E052 MUS.SAT (Muscle Satellite Cultured Cells) | 42 | 16.4 | 28.7 | 0 | 0.009208 |
| E055 SKIN.PEN.FRSK.FIB.01 (Foreskin Fibroblast Primary Cells skin01) | 43 | 17.8 | 32.3 | 0 | 0.035035 |
| E056 SKIN.PEN.FRSK.FIB.02 (Foreskin Fibroblast Primary Cells skin02) | 32 | 12.3 | 23.6 | 1.0E-6 | 0.052806 |
| E059 SKIN.PEN.FRSK.MEL.01 (Foreskin Melanocyte Primary Cells skin01) | 28 | 10.1 | 19.3 | 2.0E-6 | 0.032633 |
| E061 SKIN.PEN.FRSK.MEL.03 (Foreskin Melanocyte Primary Cells skin03) | 31 | 17.8 | 27.9 | 0.002278 | 0.300479 |
| E057 SKIN.PEN.FRSK.KER.02 (Foreskin Keratinocyte Primary Cells skin02) | 33 | 16.1 | 28.6 | 9.7E-5 | 0.218402 |
| E058 SKIN.PEN.FRSK.KER.03 (Foreskin Keratinocyte Primary Cells skin03) | 25 | 16.9 | 28.9 | 0.035785 | 0.797716 |
| E028 BRST.HMEC.35 (Breast variant Human Mammary Epithelial Cells (vHMEC)) | 49 | 17.8 | 31.6 | 0 | 0.001655 |
| E027 BRST.MYO (Breast Myoepithelial Primary Cells) | 48 | 21 | 39.8 | 0 | 0.100526 |
| E054 BRN.GANGEM.DR.NRSPHR (Ganglion Eminence derived primary cultured neurospheres) | 18 | 11.2 | 17.6 | 0.034222 | 0.492469 |
| E053 BRN.CRTX.DR.NRSPHR (Cortex derived primary cultured neurospheres) | 28 | 15.9 | 24.5 | 0.003077 | 0.25882 |
| E112 THYM (Thymus) | 24 | 6.9 | 13.5 | 0 | 0.00543 |
| E093 THYM.FET (Fetal Thymus) | 57 | 15.1 | 28.9 | 0 | 1.0E-6 |
| E071 BRN.HIPP.MID (Brain Hippocampus Middle) | 30 | 14.3 | 25.3 | 0.000141 | 0.189322 |
| E074 BRN.SUB.NIG (Brain Substantia Nigra) | 22 | 12.8 | 23.6 | 0.010919 | 0.65975 |
| E068 BRN.ANT.CAUD (Brain Anterior Caudate) | 29 | 11.9 | 21.4 | 1.3E-5 | 0.062792 |
| E069 BRN.CING.GYR (Brain Cingulate Gyrus) | 14 | 12 | 21.2 | 0.315015 | 0.963627 |
| E072 BRN.INF.TMP (Brain Inferior Temporal Lobe) | 17 | 11.3 | 19.3 | 0.066743 | 0.733751 |
| E067 BRN.ANG.GYR (Brain Angular Gyrus) | 22 | 9.9 | 17.4 | 0.000532 | 0.158608 |
| E073 BRN.DL.PRFRNTL.CRTX (Brain Dorsolateral Prefrontal Cortex) | 20 | 8.8 | 17.3 | 0.000669 | 0.282781 |
| E070 BRN.GRM.MTRX (Brain Germinal Matrix) | 13 | 9.7 | 15.7 | 0.179117 | 0.79381 |
| E082 BRN.FET.F (Fetal Brain Female) | 11 | 7.2 | 11.7 | 0.112677 | 0.619479 |
| E081 BRN.FET.M (Fetal Brain Male) | 13 | 14.3 | 20.3 | 0.675541 | 0.96856 |
| E063 FAT.ADIP.NUC (Adipose Nuclei) | 54 | 16.2 | 32.2 | 0 | 0.000143 |
| E100 MUS.PSOAS (Psoas Muscle) | 31 | 8.8 | 15.3 | 0 | 0.000196 |
| E108 MUS.SKLT.F (Skeletal Muscle Female) | 44 | 16.3 | 30 | 0 | 0.007494 |
| E107 MUS.SKLT.M (Skeletal Muscle Male) | 43 | 16.4 | 29.9 | 0 | 0.010894 |
| E089 MUS.TRNK.FET (Fetal Muscle Trunk) | 38 | 17.8 | 32.1 | 1.2E-5 | 0.159373 |
| E090 MUS.LEG.FET (Fetal Muscle Leg) | 44 | 23.2 | 43.7 | 4.2E-5 | 0.50255 |
| E083 HRT.FET (Fetal Heart) | 32 | 21.3 | 35.7 | 0.015448 | 0.765001 |
| E104 HRT.ATR.R (Right Atrium) | 24 | 10.5 | 20 | 0.000187 | 0.209671 |
| E095 HRT.VENT.L (Left Ventricle) | 33 | 14.2 | 26.1 | 9.0E-6 | 0.100517 |
| E105 HRT.VNT.R (Right Ventricle) | 26 | 11.2 | 21.3 | 8.4E-5 | 0.175844 |
| E065 VAS.AOR (Aorta) | 9 | 4.3 | 9.4 | 0.029259 | 0.593182 |
| E078 GI.DUO.SM.MUS (Duodenum Smooth Muscle) | 21 | 8 | 15 | 7.1E-5 | 0.08092 |
| E076 GI.CLN.SM.MUS (Colon Smooth Muscle) | 33 | 12.9 | 23.3 | 1.0E-6 | 0.030084 |
| E103 GI.RECT.SM.MUS (Rectal Smooth Muscle) | 28 | 8.6 | 16.3 | 0 | 0.004288 |
| E111 GI.STMC.MUS (Stomach Smooth Muscle) | 24 | 9.5 | 16.7 | 4.0E-5 | 0.049304 |
| E092 GI.STMC.FET (Fetal Stomach) | 35 | 14.9 | 28.7 | 4.0E-6 | 0.132255 |
| E085 GI.S.INT.FET (Fetal Intestine Small) | 41 | 15.7 | 27.8 | 0 | 0.00878 |
| E084 GI.L.INT.FET (Fetal Intestine Large) | 35 | 15.1 | 27.3 | 5.0E-6 | 0.081382 |
| E109 GI.S.INT (Small Intestine) | 33 | 5.9 | 10.7 | 0 | 0 |
| E106 GI.CLN.SIG (Sigmoid Colon) | 38 | 8.2 | 17 | 0 | 4.0E-6 |
| E075 GI.CLN.MUC (Colonic Mucosa) | 18 | 5.3 | 10.7 | 1.0E-5 | 0.023413 |
| E101 GI.RECT.MUC.29 (Rectal Mucosa Donor 29) | 37 | 6.8 | 13.4 | 0 | 0 |
| E102 GI.RECT.MUC.31 (Rectal Mucosa Donor 31) | 38 | 10.7 | 20.4 | 0 | 0.000215 |
| E110 GI.STMC.MUC (Stomach Mucosa) | 44 | 14.6 | 25.2 | 0 | 0.000267 |
| E077 GI.DUO.MUC (Duodenum Mucosa) | 45 | 10.8 | 20.8 | 0 | 1.0E-6 |
| E079 GI.ESO (Esophagus) | 33 | 8.6 | 17 | 0 | 0.000282 |
| E094 GI.STMC.GAST (Gastric) | 25 | 7.8 | 15.3 | 0 | 0.012087 |
| E099 PLCNT.AMN (Placenta Amnion) | 39 | 9.5 | 19.8 | 0 | 5.6E-5 |
| E086 KID.FET (Fetal Kidney) | 13 | 7 | 13.7 | 0.026403 | 0.618348 |
| E088 LNG.FET (Fetal Lung) | 30 | 16.6 | 30.5 | 0.001482 | 0.562196 |
| E097 OVRY (Ovary) | 20 | 10.9 | 19.6 | 0.008029 | 0.499693 |
| E087 PANC.ISLT (Pancreatic Islets) | 10 | 5.2 | 8.2 | 0.039449 | 0.30905 |
| E080 ADRL.GLND.FET (Fetal Adrenal Gland) | 48 | 20.1 | 37.5 | 0 | 0.046379 |
| E091 PLCNT.FET (Placenta) | 66 | 19 | 37.4 | 0 | 5.0E-6 |
| E066 LIV.ADLT (Liver) | 49 | 16 | 28.6 | 0 | 0.00018 |
| E098 PANC (Pancreas) | 29 | 12.9 | 21.6 | 5.9E-5 | 0.067321 |
| E096 LNG (Lung) | 28 | 10.2 | 20 | 2.0E-6 | 0.047076 |
| E113 SPLN (Spleen) | 63 | 13 | 26.2 | 0 | 0 |
| E114 LNG.A549.ETOH002.CNCR (A549 EtOH 0.02pct Lung Carcinoma Cell Line) | 30 | 12.7 | 23.1 | 1.7E-5 | 0.089033 |
| E115 BLD.DND41.CNCR (Dnd41 TCell Leukemia Cell Line) | 45 | 9.8 | 13.1 | 0 | 0 |
| E116 BLD.GM12878 (GM12878 Lymphoblastoid Cells) | 54 | 12.2 | 19.3 | 0 | 0 |
| E117 CRVX.HELAS3.CNCR (HeLa-S3 Cervical Carcinoma Cell Line) | 30 | 11.6 | 21.5 | 3.0E-6 | 0.043162 |
| E118 LIV.HEPG2.CNCR (HepG2 Hepatocellular Carcinoma Cell Line) | 54 | 20.6 | 34.1 | 0 | 0.000574 |
| E119 BRST.HMEC (HMEC Mammary Epithelial Primary Cells) | 43 | 17.3 | 30 | 0 | 0.011813 |
| E120 MUS.HSMM (HSMM Skeletal Muscle Myoblasts Cells) | 41 | 13.2 | 26.6 | 0 | 0.0042 |
| E121 MUS.HSMMT (HSMM cell derived Skeletal Muscle Myotubes Cells) | 42 | 13.2 | 23.9 | 0 | 0.000322 |
| E122 VAS.HUVEC (HUVEC Umbilical Vein Endothelial Primary Cells) | 27 | 13.5 | 22.6 | 0.000644 | 0.194495 |
| E123 BLD.K562.CNCR (K562 Leukemia Cells) | 23 | 12.9 | 20.3 | 0.006434 | 0.302529 |
| E124 BLD.CD14.MONO (Monocytes-CD14+ RO01746 Primary Cells) | 69 | 12.1 | 20.3 | 0 | 0 |
| E125 BRN.NHA (NH-A Astrocytes Primary Cells) | 37 | 12.5 | 23.5 | 0 | 0.004699 |
| E126 SKIN.NHDFAD (NHDF-Ad Adult Dermal Fibroblast Primary Cells) | 38 | 17.4 | 30.1 | 8.0E-6 | 0.083617 |
| E127 SKIN.NHEK (NHEK-Epidermal Keratinocyte Primary Cells) | 36 | 16 | 26.6 | 7.0E-6 | 0.042441 |
| E128 LNG.NHLF (NHLF Lung Fibroblast Primary Cells) | 35 | 11.7 | 22.3 | 0 | 0.006385 |
| E129 BONE.OSTEO (Osteoblast Primary Cells) | 47 | 15.6 | 26.9 | 0 | 0.00016 |